Gene detail

Detailed information of scaffold5.g23.t3 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold5:308951...324834
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold5.g23.t3

agccccttaaaagacgaatgtttccagttatcaaagtgagcattgccggactgaacccaaaactgaagtacatcttggtcatggacattgttccagtagatgacaacagatacaagtaccataattcagaatggaccatcgctggtaaagcggaaccacacatgcccggacggttatacgttcatccagattcaccttcaaccggagctcaacttatgagacaagtgataaatttccagaagataaagcttactaataatcatctggaacaatctgggcatgtaagtcttcccataattctaaattccatgcacaaataccagcctcgtatgcacatagtccaagcagatgatagctcaccttcagcccttcgcaagagtaccttcacaactcatgtattcactgaaactgatttcatggctgttactgcatatcaaaatccaaggactactcagttgaagatagaacacaacccatttgcaaagggttttcgtggtggatgcaatacagatcattatgcaagtatgaaaaggtaccatgagcaagacttatactatgctgccaaacgcgtttatcaaccaggcatgtcaagtatggccggaatcggtagagcatgtccaacgatgtataatccgccacagaaaccatattcggacatgtacggcccatccagttacaacactatggaatacccatacgcaacaacgaaccaatcgtacgtttcaaagtcatgcagtccagaccaagattcatattccaacacaaaagaagaacgatcaccaagttcatctcccgcgtcaccagaatctgccgttacgccgggatttccaagtggagctgctccaccgcttgcacatcctcctgctcacggcatgagctcaggatacccgatgccacctacaggatacgttcccaacggcatgtcatccgtatacggttatcctcaatcatattgcggtatttatacgtcaccgtcatcggataatttgcacgcgcggagtgagcattgtatgcgtacgccttatggatggcaacctgaagcgccttatcattagtgtgatgtggcagaggacttgcttgtctgttgagctcgcttcgttggttcgttgacagtggagatgcgagagacaactaaagttccctacctacccttgcaggatacaaggcttaatataccgggtgagtcgaagaaagtttacacgtttggcgggctgtggaataaagagtatgtggctgatcttcaaaactaagctgttaatctatcacacaaaggttaacgtagatgataatattttgtttggtaaaatcactcatcgttaagacccaaaaatcagaaaaatgcctgtaagtggtttgtatgggaaccgagaattccaccttccattctggtccacgatttacatgctattgaaatcaaaattctattcctgaaactgactattgaattgaattcatgggccagtatggaatgtggaattctcggttgtcatgcaaccccttgcaggcattcttctaattgctgggtcttgattagtgattttaccaagcaaaattttgaatgatagattttagttttgtatatcggccacatacttttttattccacagcccatcatacgagtaagctttatttttttgatcacctggtaggttccagatctttaaatcgtgtcaaaaggttgttgtaaaattcaatgacctacttctttgaactgaatgacttcaaagaaagatttctaccgtttgacttttctgaaatcttcaatattttcagaatttgggtgtttttctccattttcaagaatccaagaaagaattaaaaaaaaaactatcgtgatttctaccaacataaagagtaatttttaagaaatccatcatttatggatgtctacaatatagcatcgagaaaaagtctgccactcatctagtttatggtttagaaattttacgatgtcacatcttcaaatgagttgaaatatgaaacacactgtaggtgtagggtaatttcaaagaattattcaaaatttcggaaaagtctaacggtagaattacactgtagataggtagctaaagtttcttttaagccattcaattagcagaaatagtgcatataatttacaccgacctttttacgccgatttaaagaaccgaagcctgtgcttatatcgaaggctttgtgttatatccaaggcgagaagctacagcgcaaccatgactcgaatacgtgacagggaggacagaggccgagtcagggatttgaagctcaacaatcccttggttacaaaatggattttaagactaatgttagcgtgtatatatttttttttccttatagaatttcctttgaaaagttgacggaaggataacaagagttttaagcatataataaataccctcttatttggaaatgcaacaggtttagctagactgcgtatggaatctcttaattgagctatcaaataggacatgataggtagtgtgtttcaagataatttcgccctttcttctgaagatcacaacgcagaacattctgctagtttttgaatagtgaaatccatcagaattaacttatattattagcactccccatgcaattggtctgaaaataatatttgtctccttttagcctagtcattctagccctcattcgacagttacaatatttcgataacagaaatggcgaccgataatcagggtgtttcagaaaaaacgccacccaatcctcattgaaaatcctgaaaaattgataagatttgagtaggtgtaatgtataccgtctaaaagtgcgattgttcttttttctaatgatatgcagtttggatacattaatggaaatatttatcatctaattgatattttagtacgtacggccgatttcaaatgtaccatgctttgagagcaaaatcaacatcattttactat

Transcript

scaffold5.g23.t3

agccccttAAAAGACGAATGTTTCCAGTTATCAAAGTGAGCATTGCCGGACTGAACCCAAAACTGAAGTACATCTTGGTCATGGACATTGTTCCAGTAGATGACAACAGATACAAGTACCATAATTCAGAATGGACCATCGCTGGTAAAGCGGAACCACACATGCCCGGACGGTTATACGTTCATCCAGATTCACCTTCAACCGGAGCTCAACTTATGAGACAAGTGATAAATTTCCAGAAGATAAAGCTTACTAATAATCATCTGGAACAATCTGGGCATGTAAGTCTTCCCATAATTCTAAATTCCATGCACAAATACCAGCCTCGTATGCACATAGTCCAAGCAGATGATAGCTCACCTTCAGCCCTTCGCAAGAGTACCTTCACAACTCATGTATTCACTGAAACTGATTTCATGGCTGTTACTGCATATCAAAATCCAAGGACTACTCAGTTGAAGATAGAACACAACCCATTTGCAAAGGGTTTTCGTGGTGGATGCAATACAGATCATTATGCAAGTATGAAAAGGTACCATGAGCAAGACTTATACTATGCTGCCAAACGCGTTTATCAACCAGGCATGTCAAGTATGGCCGGAATCGGTAGAGCATGTCCAACGATGTATAATCCGCCACAGAAACCATATTCGGACATGTACGGCCCATCCAGTTACAACACTATGGAATACCCATACGCAACAACGAACCAATCGTACGTTTCAAAGTCATGCAGTCCAGACCAAGATTCATATTCCAACACAAAAGAAGAACGATCACCAAGTTCATCTCCCGCGTCACCAGAATCTGCCGTTACGCCGGGATTTCCAAGTGGAGCTGCTCCACCGCTTGCACATCCTCCTGCTCACGGCATGAGCTCAGGATACCCGATGCCACCTACAGGATACGTTCCCAACGGCATGTCATCCGTATACGGTTATCCTCAATCATATTGCGGTATTTATACGTCACCGTCATCGGATAATTTGCACGCGCGGAGTGAGCATTGTATGCGTACGCCTTATGGATGGCAACCTGAAGCGCCTTATCATTAGTGTGATGTGGCAGAGGACTTGCTTGTCTGTTGAGCTCGCTTCGTTGGTTCGTTGACAGTGGAGATGCGAGAGACAACTAAAGTTCCCTACCTACCCTTGCAGGATACAAGGCTTAATAtaccgggtgagtcgaagaaagtttacacgtttggcgggctgtggaataaagagtatgtggctgatcttcaaaactaagctgttaatctatcacacaaaggttaacgtagatgataatattttgtttggtaaaatcactcatcgttaagacccaaaaatcagaaaaatgcctgtaagtggtttgtatgggaaccgagaattccaccttccattctggtccacgatttacatgctattgaaatcaaaattctattcctgaaactgactattgaattgaattcatgggccagtatggaatgtggaattctcggttgtcatgcaaccccttgcaggcattcttctaattgctgggtcttgattagtgattttaccaagcaaaattttgaatgatagattttagttttgtatatcggccacatacttttttattccacagcccatcatacgagtaagctttatttttttgatcacctggtaggttccagatctttaaatcgtgtcaaaaggttgttgtaaaattcaatgacctacttctttgaactgaatgacttcaaagaaagatttctaccgtttgacttttctgaaatcttcaatattttcagaatttgggtgtttttctccattttcaagaatccaagaaagaattaaaaaaaaaactatcgtgatttctaccaacataaagagtaatttttaagaaatccatcatttatggatgtctacaatatagcatcgagaaaaagtctgccactcatctagtttatggtttagaaattttacgatgtcacatcttcaaatgagttgaaatatgaaacacactgtaggtgtagggtaatttcaaagaattattcaaaatttcggaaaagtctaacggtagaattacactgtagataggtagctaaagtttcttttaagccattcaattagcagaaatagtgcatataatttacaccgacctttttacgccgatttaaagaaccgaagcctgtgctTATATCGAAGGCTTTGTGTTATATCCAAGGCGAGAAGCTACAGCGCAACCATGACTCGAATACGTGACAGGGAGGACAGAGGCCGAGTCAGGGATTTGAAGCTCAACAATCCCTTGGTTACAAAATGGATTTTAAGACTAATGTTAGCGTGTATATATTTTTTTTTCCTTATAGAATTTCCTTTGAAAAGTTGACGGAAGGATAACAAGAGTTTTAAGCATATAATAAATACCCTCTTATTTGGAAATGCAACAGGTTTAGCTAGACTGCGTATGGAATCTCTTAATTGAGCTATCAAATAGGACATGATAGGTAGTGTGTTTCAAGATAATTTCGCCCTTTCTTCTGAAGATCACAACGCAGAACATTCTGCTAGTTTTTGAATAGTGAAATCCATCAGAATTAACTTATATTATTAGCACTCCCCATGCAATTGGTCTGAAAATAATATTTGTCTCCTTTTAGCCTAGTCATTCTAGCCCTCATTCGACAGTTACAATATTTCGATAACAGAAATGGCGACCGATAATcagggtgtttcagaaaaaacgccacccaatcctcattgaaaatcctgaaaaattgataagatttgagtaggtgtaatgtataccgtctaaaagtgcgattgttcttttttctaatgatatgcagtttggatacattaatggaaatatttatcatctaattgatattttagtacgtacggccgatttcaaatgtaccatgctttgagagcaaaatcaacatcattttactat

Protein

Gene family

Family type	Membership / link
Transcription factor family	T-box · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00907 all species →	T-box	T-box	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036960 all species →	Homologous_superfamily	T-box superfamily	Interproscan
IPR001699 all species →	Family	T-box transcription factor	Interproscan
IPR046360 all species →	Domain	T-box transcription factor, DNA-binding domain	Interproscan
IPR008967 all species →	Homologous_superfamily	p53-like transcription factor, DNA-binding domain superfamily	Interproscan
IPR018186 all species →	Conserved_site	Transcription factor, T-box, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11267 all species →	T-BOX PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0001708 all species →	Biological Process	cell fate specification	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0045893 all species →	Biological Process	positive regulation of DNA-templated transcription	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for scaffold5.g23.t3.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.