Genomic Location: scaffold5:1300766...1321174
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita · all data for this species · gene families
| CDS |
| scaffold5.g86.t3 |
| Transcript |
| scaffold5.g86.t3 |
| Protein |
| scaffold5.g86.t3 |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00878 all species → | CIMR | Cation-independent mannose-6-phosphate receptor repeat | Family | Interproscan |
| PF00147 all species → | Fibrinogen_C | Fibrinogen beta and gamma chains, C-terminal globular domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR044865 all species → | Domain | MRH domain | Interproscan |
| IPR009011 all species → | Homologous_superfamily | Mannose-6-phosphate receptor binding domain superfamily | Interproscan |
| IPR000479 all species → | Repeat | Cation-independent mannose-6-phosphate receptor repeat | Interproscan |
| IPR036056 all species → | Homologous_superfamily | Fibrinogen-like, C-terminal | Interproscan |
| IPR002181 all species → | Domain | Fibrinogen, alpha/beta/gamma chain, C-terminal globular domain | Interproscan |
| IPR014716 all species → | Homologous_superfamily | Fibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 1 | Interproscan |
| IPR050373 all species → | Family | Fibrinogen C-terminal domain-containing protein | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR19143 all species → | FIBRINOGEN/TENASCIN/ANGIOPOEITIN | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005537 all species → | Molecular Function | D-mannose binding | Interproscan |
| GO:0007041 all species → | Biological Process | lysosomal transport | Interproscan |
| GO:0038023 all species → | Molecular Function | signaling receptor activity | Interproscan |
| GO:0005615 all species → | Cellular Component | extracellular space | Interproscan |
| GO:0062023 all species → | Cellular Component | collagen-containing extracellular matrix | Interproscan |
scaffold5.g86.t3.Transcript abundance of scaffold5.g86.t3 across 22 RNA-seq samples of Aurelia aurita. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| complete polyp | 3 | 0 | 0.00 | 0.00 | |
| polyp not induced | 2 | 0 | 0.00 | 0.00 | |
| polyp endoderm from body column | 1 | 0 | 0.00 | 0.00 | |
| jellyfish bell edge | 1 | 0 | 0.00 | 0.00 | |
| strobila non-segmented part | 1 | 0 | 0.00 | 0.00 | |
| polyp 12h induction with 5M2MI +20C | 1 | 0 | 0.00 | 0.00 | |
| polyp 24h induction with 5M2MI | 1 | 0 | 0.00 | 0.00 | |
| strobila segments | 1 | 0 | 0.00 | 0.00 | |
| strobila heads | 1 | 0 | 0.00 | 0.00 | |
| polyp 24h induction with 5M2MI +20C | 1 | 0 | 0.00 | 0.00 | |
| jellyfish ropalia | 1 | 0 | 0.00 | 0.00 | |
| polyp head region | 1 | 0 | 0.00 | 0.00 | |
| polyp 20h induction with 5M2MI +20C | 1 | 0 | 0.00 | 0.00 | |
| complete strobila | 1 | 0 | 0.00 | 0.00 | |
| 13 jellyfish ropalia | 1 | 0 | 0.00 | 0.00 | |
| complete juvenile jellyfish | 1 | 0 | 0.00 | 0.00 | |
| polyp ectoderm from body column | 1 | 0 | 0.00 | 0.00 | |
| jellyfish bell edge without ropalia | 1 | 0 | 0.00 | 0.00 | |
| 3 juvenile jellyfish (~7mm in diameter) | 1 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (AAURI1_TPM,
StringTie quantification over 22 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
