Gene detail

Detailed information of scaffold5.g98.t2 in Aurelia aurita

Genomic Location: scaffold5:1488614...1506058
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold5.g98.t2

gctcttccaccaaaacccacgaatttggcaattattgacttgaaaaacacatctgctaaaataatttggcagtcgaagaagtcaaatttcaccgtctggtatgctattgaatgtggcactattgaaattggctcaacagcatgcaaagatatcgtgtactctccagaagctacaaaaatatcttcaagaaaagttgatctcagaaatcttcaaccatacactaagtacaaatttatgatctacgccaagaatgctgtttcagggaaccttccgaagaaacattggccaaatggaacaattaccttcatgacgcctgctgggcttccatctgcagtgggcagcttccttcacaaggtggaaaagaatacactgacccttggctgggagccacctctattcaaacgggatgctgtggtatattatgagacaaagtgtgatgaaatgaaaatgaaaaaaacatttttgccatatgtgacgatagccattgggaaacatacctctattacatgtcaagtacgagctaccaattcggctggaaaggggccatggaggacgaaaacgatcactctgtcagatggacttagctcatcggaaacagcaataatatctgcatcagttgctatggtttttgtcatcattctggttgtaattgtggtggtatggagaaggttgaagaaacgaagaagacggccatcgaaaagtgatgatgcagtgagatggagggggccagattcaagagagccaaatgtgtatgaccccgtgcatattggattaaatgaaaatacagcagaaaacgtcggatttcaggaggacgatgaaggcgataccccttacccacttttcaagtcgaaagagattgctttgcaaataaaaaatggctatcgaatgtctaaaccacctcactgttcggttgaactgtatgagatcatgatgaagtgctggaacaatgatgcaaaattcagacccagcttttcagagctcaaagatactttccaggaattactttcccaagatgatcatctttacctgaatatggataactacaatgatgatctgtacgtgcactttgaaagcgacgatgaacaagaaaacacagccttataactgactgataaatcttcaatgtgaaggtaacgtactataccgtcatatgcaaaatgatggcaacatctgcttgattaaagtctgcctcaaattagatgtcacttgagatttgcgataacgcaaaattaattatccaaaacacttaacatatttttattcgcggaccttttcacgtagcatttaatttgagacagactttagagtacagctctaattcgatgaaccacatagtcatcagaaatctttgaagagaatcaacggagaaaaaagtcccgcacggaaggggtctgggtagtcagaaacgtaggaactgggggcacgtgcccccccccccgaagattttgcaataaacaaaaaatgtcctttttgttttcggaagtgcccttttagcttaatgaaaaaagtgcccttgaagtgtcgtgcccctccaagtttaagatcgttcctacggccctgtgggtagtctgtaatagcctattgtatatgaggatctcgaatggtgcatggaccttgtatagctaaagaaacaatggcatgtgtgggcgttgtctttgtactatttttagattactccacttttctccgttcattcactttaaagacaaatgatggacatacagctatctaatttaaaaatagaacaaaagaagacagcgtgtctatatttgtccaatcgtcttactctattgagacaatcaaatacaatggaataaataagctatatttagattgcccagacccctaactagagtaatcttatatccccgtcatttttctttcattagctgcttaaatattcgagttctaagtttttcttacaatggttgaaagacaatcaaagcaaacttgtacgtaatagcttaaacagattgctgtacagtaattatatacctagatagaggtagtattggaaggaacgtttgttgcaaccgaatgcaattcatccgtatattcttttactgtttctcaataaaattgacttcaaatttttaataaatgaataacatcgat

Transcript

scaffold5.g98.t2

GCTCTTCCACCAAAACCCACGAATTTGGCAATTATTGACTTGAAAAACACATCTGCTAAAATAATTTGGCAGTCGAAGAAGTCAAATTTCACCGTCTGGTATGCTATTGAATGTGGCACTATTGAAATTGGCTCAACAGCATGCAAAGATATCGTGTACTCTCCAGAAGCTACAAAAATATCTTCAAGAAAAGTTGATCTCAGAAATCTTCAACCATACACTAAGTACAAATTTATGATCTACGCCAAGAATGCTGTTTCAGGGAACCTTCCGAAGAAACATTGGCCAAATGGAACAATTACCTTCATGACGCCTGCTGGGCTTCCATCTGCAGTGGGCAGCTTCCTTCACAAGGTGGAAAAGAATACACTGACCCTTGGCTGGGAGCCACCTCTATTCAAACGGGATGCTGTGGTATATTATGAGACAAAGTGTGATGAAATGAAAATGAAAAAAACATTTTTGCCATATGTGACGATAGCCATTGGGAAACATACCTCTATTACATGTCAAGTACGAGCTACCAATTCGGCTGGAAAGGGGCCATGGAGGACGAAAACGATCACTCTGTCAGATGGACTTAGCTCATCGGAAACAGCAATAATATCTGCATCAGTTGCTATGGTTTTTGTCATCATTCTGGTTGTAATTGTGGTGGTATGGAGAAGGTTGAAGAAACGAAGAAGACGGCCATCGAAAAGTGATGATGCAGTGAGATGGAGGGGGCCAGATTCAAGAGAGCCAAATGTGTATGACCCCGTGCATATTGGATTAAATGAAAATACAGCAGAAAACGTCGGATTTCAGGAGGACGATGAAGGCGATACCCCTTACCCACTTTTCAAGTCGAAAGAGATTGCTTTGCAAATAAAAAATGGCTATCGAATGTCTAAACCACCTCACTGTTCGGTTGAACTGTATGAGATCATGATGAAGTGCTGGAACAATGATGCAAAATTCAGACCCAGCTTTTCAGAGCTCAAAGATACTTTCCAGGAATTACTTTCCCAAGATGATCATCTTTACCTGAATATGGATAACTACAATGATGATCTGTACGTGCACTTTGAAAGCGACGATGAACAAGAAAACACAGCCTTATAACTGACTGATAAATCTTCAATGTGAAGGTAACGTACTATACCGTCATATGCAAAATGATGGCAACATCTGCTTGATtaaagtctgcctcaaattagatgtcacttgagatttgcgataacgcaaaattaattatccaaaacacttaacatatttttattcgcggaccttttcacgtagcatttaatttgagacagactttaGAGTACAGCTCTAATTCGATGAACCACATAGTCATCAGAAATCTTTGAAGAGAATCAACGGAGAAAAAAGTCCCGCACGGAAGGGGTCTGGGTAGTcagaaacgtaggaactgggggcacgtgcccccccccccgaagattttgcaataaacaaaaaatgtcctttttgttttcggaagtgcccttttagcttaatgaaaaaagtgcccttgaagtgtcgtgcccctccaagtttaagatcgttcctacggccctGTGGGTAGTCTGTAATAGCCTATTGTATATGAGGATCTCGAATGGTGCATGGACCTTGTATAGCTAAAGAAACAATGGCATGTGTGGGCGTTGTCTTTGTACTATTTTTAGATTACTCCACTTTTCTCCGTTCATTCACTttaaagacaaatgatggacatacagctatctaatttaaaaatagaacaaaagaagacagcgtgtctatatttgtccaatcgtcttactctattgagacaatcaaatacaatggaataaataagctatatttagattgcccagacccctaactagagtaatcttatatccccgtcatttttctttCATTAGCTGCTTAAATATTCGAGTTCTAAGTTTTTCTTACAATGGTTGAAAGACAATCAAAGCAAACTTGTACGTAATAGCTTAAACAGATTGCTGTACAGTAATTATATACCTAGATAGAGGTAGTATTGGAAGGAACGTTTGTTGCAACCGAATGCAATTCATCCGTATATTCTTTTACTGTTTCTCAATAAAATTGACTTCAAATTTTTAATAAATGAATAACATCGAT

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07714 all species →	PK_Tyr_Ser-Thr	Protein tyrosine and serine/threonine kinase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001245 all species →	Domain	Serine-threonine/tyrosine-protein kinase, catalytic domain	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR050122 all species →	Family	Receptor Tyrosine Kinase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24416 all species →	TYROSINE-PROTEIN KINASE RECEPTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0004714 all species →	Molecular Function	transmembrane receptor protein tyrosine kinase activity	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007169 all species →	Biological Process	cell surface receptor protein tyrosine kinase signaling pathway	Interproscan
GO:0007275 all species →	Biological Process	multicellular organism development	Interproscan
GO:0033674 all species →	Biological Process	positive regulation of kinase activity	Interproscan
GO:0043235 all species →	Cellular Component	receptor complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for scaffold5.g98.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.