Gene detail

Detailed information of scaffold51.g24.t2 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold51:432005...445630
NR annotation: no NCBI-NR hit recorded
Species abbreviation AAURI2 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold51.g24.t2

gatttattcgaaatcaaagagggcggcctgaagacggactttgctgcagtactgttacttgatttccatagaaaacctgctaaatagagacatctgctctctttcgccaacatgccgggcaaagcgatgagatgtgttgttgaacttgatgtccatgttgtcacttgtcccggaacctttcttaaagactacgaatatgtgtacctcaatgtggaaatgcttggtctggaggcaagaacaaaatcagtgcccccaacatttccccttttctttcatgagcgtctcaagtttgaaaggacattttatgactgtacagatccagcaatggttgctgcattactcaagggtgaagatgtaataatagagctcagacagcacacagattatatcacagatgggaaagtcatttcacattgcagcagtaacacacatgattttctgtatcctgctattccgcaattttatggacctggaagagagattcttctctacaaaacatcaagatttaaaccaattagaatcactggagagccagtgaagttggaattttcatcaaaaacagcaatcagtgaaattgcagacttctatactacatctgacacgcaaattagccgttcacgttcaaaaacacgcacacgatcagtctcgcccgcacgattttctcgctcattatccccaacacgtcagttgtcttcaagtgcagaacttacaaatgctgatcatgattctaagtttattgtaaagaggaaagacgataagatccttcaaaatcgtgacttttcttcttttactcgccccaagcctcgtcgttccaaatcgccctcccgcacaagtcgatcaagccgcgccatgtctccgaatatctcatttggacttggctctgcaacagtagagtctcttccattggtgaaatacccgactttgcagccagaaaatcaggccgacagggttgatccttggaagagcccacccgcccgtttgagcatcatgagaaggggtcgtggagactcacctatttctgacacgcaaattagccgttcacgttcaaaaacacgcacacgatcagtctcgcccgcacgattttctcgctcattatccccaacacgtcagttgtcttcaagtgcagaacttacaaatgctgatcatgattctaagtttattgtaaagaggaaagacgataagatccttcaaaatcgtgacttttcttcttttactcgccccaagcctcgtcgttccaaatcgccctcccgcacaagtcgatcaagccgcgccatgtctccgaatatctcatttggacttggctctgcaacagtagagtctcttccatcttggaaatatccttcagatttcccatccagcacaatgagatcttcgatgaagcattcccgatcacgtacaacacctcttcgttcagctagtccaacaagaagtctcagatacgcacttgatgatataagtatctccagaaacacttctagattggacaagacgtacgctgatccagttctgaagtacaaaactcgttattcaccaaacctaaaagcagcattaggagcgtcagatagaatccaaagacgagtcgaagaagtcgtgaaaaggaaagattattctcttgattctgatgataatttgagtgatgagtcattagacgtattgagagattctttgcgggaagaaagaaaggcgttgagtgatgcgattcgagaagctgacagagaggcattctaccgatcagttcgctagcatttcctcacgttctagtgcggtacaaagttggctatattatcttgcaaggtttcaagaaacaaagacatctatataaacattgtacttatatttggcatatgaacagaaactctacgaacaaatctaattgtgctataattataacgggatcttctcttctataaatacacctacaaagctgggggaaataaagatatagtcccgtgtaacatctcaaggtttcctttatatttgatgatacactaaggtatcatagttccattggggtaccagagattgatcaaatcgagagtttgttttgttttgggaatatgaaaggttatgtatgattgtttcatatttttagttaatcaagcaaattataatcaagtagtcaggatgca

Transcript

scaffold51.g24.t2

GATTTATTCGAAATCAAAGAGGGCGGCCTGAAGACGGACTTTGCTGCAGTACTGTTACTTGATTTCCATAGAAAACCTGCTAAATAGAGACATCTGCTCTCTTTCGCCAACATGCCGGGCAAAGCGATGAGATGTGTTGTTGAACTTGATGTCCATGTTGTCACTTGTCCCGGAACCTTTCTTAAAGACTACGAATATGTGTACCTCAATGTGGAAATGCTTGGTCTGGAGGCAAGAACAAAATCAGTGCCCCCAACATTTCCCCTTTTCTTTCATGAGCGTCTCAAGTTTGAAAGGACATTTTATGACTGTACAGATCCAGCAATGGTTGCTGCATTACTCAAGGGTGAAGATGTAATAATAGAGCTCAGACAGCACACAGATTATATCACAGATGGGAAAGTCATTTCACATTGCAGCAGTAACACACATGATTTTCTGTATCCTGCTATTCCGCAATTTTATGGACCTGGAAGAGAGATTCTTCTCTACAAAACATCAAGATTTAAACCAATTAGAATCACTGGAGAGCCAGTGAAGTTGGAATTTTCATCAAAAACAGCAATCAGTGAAATTGCAGACTTCTATACTACATCTGACACGCAAATTAGCCGTTCACGTTCAAAAACACGCACACGATCAGTCTCGCCCGCACGATTTTCTCGCTCATTATCCCCAACACGTCAGTTGTCTTCAAGTGCAGAACTTACAAATGCTGATCATGATTCTAAGTTTATTGTAAAGAGGAAAGACGATAAGATCCTTCAAAATCGTGACTTTTCTTCTTTTACTCGCCCCAAGCCTCGTCGTTCCAAATCGCCCTCCCGCACAAGTCGATCAAGCCGCGCCATGTCTCCGAATATCTCATTTGGACTTGGCTCTGCAACAGTAGAGTCTCTTCCATTGGTGAAATACCCGACTTTGCAGCCAGAAAATCAGGCCGACAGGGTTGATCCTTGGAAGAGCCCACCCGCCCGTTTGAGCATCATGAGAAGGGGTCGTGGAGACTCACCTATTTCTGACACGCAAATTAGCCGTTCACGTTCAAAAACACGCACACGATCAGTCTCGCCCGCACGATTTTCTCGCTCATTATCCCCAACACGTCAGTTGTCTTCAAGTGCAGAACTTACAAATGCTGATCATGATTCTAAGTTTATTGTAAAGAGGAAAGACGATAAGATCCTTCAAAATCGTGACTTTTCTTCTTTTACTCGCCCCAAGCCTCGTCGTTCCAAATCGCCCTCCCGCACAAGTCGATCAAGCCGCGCCATGTCTCCGAATATCTCATTTGGACTTGGCTCTGCAACAGTAGAGTCTCTTCCATCTTGGAAATATCCTTCAGATTTCCCATCCAGCACAATGAGATCTTCGATGAAGCATTCCCGATCACGTACAACACCTCTTCGTTCAGCTAGTCCAACAAGAAGTCTCAGATACGCACTTGATGATATAAGTATCTCCAGAAACACTTCTAGATTGGACAAGACGTACGCTGATCCAGTTCTGAAGTACAAAACTCGTTATTCACCAAACCTAAAAGCAGCATTAGGAGCGTCAGATAGAATCCAAAGACGAGTCGAAGAAGTCGTGAAAAGGAAAGATTATTCTCTTGATTCTGATGATAATTTGAGTGATGAGTCATTAGACGTATTGAGAGATTCTTTGCGGGAAGAAAGAAAGGCGTTGAGTGATGCGATTCGAGAAGCTGACAGAGAGGCATTCTACCGATCAGTTCGCTAGCATTTCCTCACGTTCTAGTGCGGTACAAAGTTGGCTATATTATCTTGCAAGGTTTCAAGAAACAAAGACATCTATATAAACATTGTACTTATATTTGGCATATGAACAGAAACTCTACGAACAAATCTAATTGTGCTATAATTATAACGGGATCTTCTCTTCTATAAATACACCTACAAAGCTGGGGGAAATAAAGATATAGTCCCGTGTAACATCTCAAGGTTTCCTTTATATTTGATGATACACTAAGGTATCATAGTTCCATTGGGGTACCAGAGATTGATCAAATCGAGAGTTTGTTTTGTTTTGGGAATATGAAAGGTTATGTATGATTGTTTCATATTTTTAGTTAATCAAGCAAATTATAATCAAGTAGTCAGGATGCA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14909 all species →	SPATA6	Spermatogenesis-assoc protein 6	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR032732 all species →	Domain	Spermatogenesis-associated protein 6, N-terminal	Interproscan
IPR042769 all species →	Family	SPATA6 family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16435 all species →	SPERMATOGENESIS-ASSOCIATED PROTEIN 6 SPATA6	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0007283 all species →	Biological Process	spermatogenesis	Interproscan
GO:0032027 all species →	Molecular Function	myosin light chain binding	Interproscan
GO:0097224 all species →	Cellular Component	obsolete sperm connecting piece	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23224	SPATA6; spermatogenesis-associated protein 6	-	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.