Gene detail

Detailed information of scaffold51.g30.t2 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold51:479404...498540
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold51.g30.t2

catgtttttttatttgcagacaaagtaggcaaagattagtacaccaagacaaatatcctatcactggcctagcatacaaacaaattggcagcaatattaccttatttgttacgacaaacgaaacagtcacatcgtacaatgtttctgcaaaagacagaaaggagctactcgatgaatttggctgtgattttaaatgctctgctatcagtgatgtgtctcaagaaaatcaatttgttatcgcaagatctgatgcattgtatttttaccagccagagggaagaggtccctgcttggcgtttgaaggtgacaaaaagatggtttattggttccgtggttatttggttgttgtacgaaaagaaacaaaacaattaccaagggctggcatggcaatgaatacattgacagtttacgatattcaaaataagttcattgctttcactgcgccgtttcaagaaataatagatgtattaggcgaatggggatcactgcatgtcattacgagagagggaaagatttttcaactggaagagaaggacacgcagacaaagctagaaacgctcttcaagaagaatatgtatgatatggccatcaatcttgcaaaaagtcagcactactcagatggcctgtttgagatcttcagacaatatggtgatcatttatatagcaaaggcgatcatgacggtgcaattcagcaatacattcgaactattggacacttagaggcgtcatatgtcataagaaagtttctggatgcccaaagaatccacaatctcacagactatctgcaggctttgcatgagaaaggactcgccaacacagaccacacaacgttgcttctcaattgttatacaaagctgaaagctgttgacaagctcaatatgtttatccagacggataaagaactcaattttgaagttgaaacagcaatcaaggtttgcagacaagctggctacttcaaacatgcacttgatctcgcggagaaattccaacaacatgaatggtatttaaagattcaattagaagatgtgaaagattataaaaaagcgttgaaatacatttcaagattgccttttgtcgaggctgaggcaaacatgaaggcatacggtaaaacactggttaatgaggagccagatgaaacgacagaaatgctaaagaaactgtgttctgattataaaccagtcatagataaaccagttgaacggcacgttcaggataatggtaatattgatactacaagtggtccagcaagttttggtataatgggaatggcacacaagacagcttcgctcatgataagtccagctagtgttgagccagttcttcgtgcacgtccagatgaattcattcatattttcgttcatcagaaacagaaattggtcgaatttcttgagcatatggttaagatacgaaacgattgctccaatgttgtctacaacactctaattgaactttacttacattatgctagcagagctgctgaaaccaaagattacgtcgttgaagctgaacaagaaaacaaatgcttaaaccttttcacaaacacggagtcaaaatacgacttggaccatgcattggtcttggctcagatgcataatttcaaacgaggcattctgtttctctacgaaaaagcaaagttatttcaacaaatcttgagatatcatatggaacataatgaccacgacgctatcatcgaagactgcaaaaaatatggccgacaggatacaagtctttggagccaagctttgtcatattttgcaaggaaagaagaagattgtcgaaggcacatcatggaagttcttgaacatatcgataaatacaatttgctatcccccttactggtagttcagacacttgcacataactcaacagcaactttagcagttgtcaaggattatatcgtcagaagactccagcatgaaaatgagcagattgcaaaggacgaaagaatgattcgacaatatcaagatgacacagaaaagatgcgtaatcaaatagaagaattgaaaacgtgatgcttcgaaagctattcagaaaatgaaaatgaatgtccttgctgtgtgtcagaaaacagaaaagttttggacatcatcaaggcacaagaacacaataaagatttacatgaacagtttcatcaccaggattacatcgtcagaagactccagcatgaaaatgagcagattgcaaaggacgaaagaatgattcgacaatatcaagatgacacagaaaagatgcgcaatcaaatagaagagttaaaaacgtgtgcaaagatattccagagctcaaaatgtatgatttgttctcgaatgttagagttacctgctgttcatttcctttgtggagattcctttcatcaaggatgcttcgaaagctattcagaaaatgaaaatgaatgtccttgctgtgtgtccgaaaacagaaaagttttggacatcatcaaggcacaagaacacaataaagatttacatgaacagtttcatcaccagctggaaagatcagctgatggattctcagtcgttgctgattattttggaagaggagtgttcaataaggttacagttctcacagatccaggcacgcaacaaccgatggtgcctgttgacccttcagttcagagagacaaactgcttcgctgattataaatagtaagactcaatttaattagaagtgaaattaacttaatttccaggtatgtggtaagagaactttattcattgggcagaaaatagacgttttagttattctacagaggactgtagatcaagcgatatttgtatacattttacccaaatttgacgacttttcgaatgtgcattggagtgataaaagttcttgggccggtcaaacgttctaagaaccttccggatactaatatgtgaagatgtatttcgattcagactctggtatagaagataagtagatatcagagactaaacatatggagatttctggaatacttaacagtgtcaactttggaggtcagttatcggaatcttttggatacaccaccctttccagttttactaaactgatacctttaatatattgttcctcatggctcgtttggggaatgttcttattgcccatttgataaaatatttgaggctttttgacaagttacatcggaggatatcctggtctccaggcagacttccaatcggagcattttgtgtcaaagattagataacacatcgaatgaaactttttgtgcacagtcagggttgatctaggaatcagtaaaaaattcttgctatattttgttaacttaaaacgcatcattaattgtaaatatgatttatattaaatatttgataattcaattttggttaagttttaaacaggagtactttttggacacccactgctccaactcaacaaaatattgcaggtttgagactattgaagaatttaacaaagagatgctactgttttccattgttccatttcaagaagaagttaaagatatcctactttgtaacaataataacacccaaaaatcgtgttacaggagttaaaattgtcaattatatgaatttaaaagtatgccatttttacttcagtttcattgaaaactatcattcacaacattcagtaagtctaacagtttgaaccatatatttgtgattaaaagtatttgtacgcctatgctgctcatcacagcttattcaccaaaaattgtactgtaatgcagtttaactaagatgttctgtttacttttttcggcaaagaaaagtgccatcaccaacttgtaacaatgacacatcaaccctttcatcttgcttaatcttcttgttcaaattatttaatgctttggtagattcatcgaatcctgcttcatcctgagtgacttttccactccaaaggcagttatccacagcaatgatccccccttgttttagaagcaccaatgacttttcataatacgcatcataatttggtttatcagcatcaataaatgcaaaatcaaattgaccagtttggccctctttaatcagattgtcaagcgtttctgttgcaggagcgatctttactttgatcttcttgaggcattcagcatcccaaaatggttttcctgtgttgacgtatttctcctccacatcacaagcaatcacctcaccatcctctggtagtgcgtatgcgatgctgcaagcattgtatccagtgaatgtgccaatttcaatacacctaggatgcaaat

Transcript

scaffold51.g30.t2

CATGTTTTTTTATTTGCAGACAAAGTAGGCAAAGATTAGTACACCAAGACAAATATCCTATCACTGGCCTAGCATACAAACAAATTGGCAGCAATATTACCTTATTTGTTACGACAAACGAAACAGTCACATCGTACAATGTTTCTGCAAAAGACAGAAAGGAGCTACTCGATGAATTTGGCTGTGATTTTAAATGCTCTGCTATCAGTGATGTGTCTCAAGAAAATCAATTTGTTATCGCAAGATCTGATGCATTGTATTTTTACCAGCCAGAGGGAAGAGGTCCCTGCTTGGCGTTTGAAGGTGACAAAAAGATGGTTTATTGGTTCCGTGGTTATTTGGTTGTTGTACGAAAAGAAACAAAACAATTACCAAGGGCTGGCATGGCAATGAATACATTGACAGTTTACGATATTCAAAATAAGTTCATTGCTTTCACTGCGCCGTTTCAAGAAATAATAGATGTATTAGGCGAATGGGGATCACTGCATGTCATTACGAGAGAGGGAAAGATTTTTCAACTGGAAGAGAAGGACACGCAGACAAAGCTAGAAACGCTCTTCAAGAAGAATATGTATGATATGGCCATCAATCTTGCAAAAAGTCAGCACTACTCAGATGGCCTGTTTGAGATCTTCAGACAATATGGTGATCATTTATATAGCAAAGGCGATCATGACGGTGCAATTCAGCAATACATTCGAACTATTGGACACTTAGAGGCGTCATATGTCATAAGAAAGTTTCTGGATGCCCAAAGAATCCACAATCTCACAGACTATCTGCAGGCTTTGCATGAGAAAGGACTCGCCAACACAGACCACACAACGTTGCTTCTCAATTGTTATACAAAGCTGAAAGCTGTTGACAAGCTCAATATGTTTATCCAGACGGATAAAGAACTCAATTTTGAAGTTGAAACAGCAATCAAGGTTTGCAGACAAGCTGGCTACTTCAAACATGCACTTGATCTCGCGGAGAAATTCCAACAACATGAATGGTATTTAAAGATTCAATTAGAAGATGTGAAAGATTATAAAAAAGCGTTGAAATACATTTCAAGATTGCCTTTTGTCGAGGCTGAGGCAAACATGAAGGCATACGGTAAAACACTGGTTAATGAGGAGCCAGATGAAACGACAGAAATGCTAAAGAAACTGTGTTCTGATTATAAACCAGTCATAGATAAACCAGTTGAACGGCACGTTCAGGATAATGGTAATATTGATACTACAAGTGGTCCAGCAAGTTTTGGTATAATGGGAATGGCACACAAGACAGCTTCGCTCATGATAAGTCCAGCTAGTGTTGAGCCAGTTCTTCGTGCACGTCCAGATGAATTCATTCATATTTTCGTTCATCAGAAACAGAAATTGGTCGAATTTCTTGAGCATATGGTTAAGATACGAAACGATTGCTCCAATGTTGTCTACAACACTCTAATTGAACTTTACTTACATTATGCTAGCAGAGCTGCTGAAACCAAAGATTACGTCGTTGAAGCTGAACAAGAAAACAAATGCTTAAACCTTTTCACAAACACGGAGTCAAAATACGACTTGGACCATGCATTGGTCTTGGCTCAGATGCATAATTTCAAACGAGGCATTCTGTTTCTCTACGAAAAAGCAAAGTTATTTCAACAAATCTTGAGATATCATATGGAACATAATGACCACGACGCTATCATCGAAGACTGCAAAAAATATGGCCGACAGGATACAAGTCTTTGGAGCCAAGCTTTGTCATATTTTGCAAGGAAAGAAGAAGATTGTCGAAGGCACATCATGGAAGTTCTTGAACATATCGATAAATACAATTTGCTATCCCCCTTACTGGTAGTTCAGACACTTGCACATAACTCAACAGCAACTTTAGCAGTTGTCAAGGATTATATCGTCAGAAGACTCCAGCATGAAAATGAGCAGATTGCAAAGGACGAAAGAATGATTCGACAATATCAAGATGACACAGAAAAGATGCGTAATCAAATAGAAGAATTGAAAACGTGATGCTTCGAAAGCTATTCAGAAAATGAAAATGAATGTCCTTGCTGTGTGTCAGAAAACAGAAAAGTTTTGGACATCATCAAGGCACAAGAACACAATAAAGATTTACATGAACAGTTTCATCACCAGGATTACATCGTCAGAAGACTCCAGCATGAAAATGAGCAGATTGCAAAGGACGAAAGAATGATTCGACAATATCAAGATGACACAGAAAAGATGCGCAATCAAATAGAAGAGTTAAAAACGTGTGCAAAGATATTCCAGAGCTCAAAATGTATGATTTGTTCTCGAATGTTAGAGTTACCTGCTGTTCATTTCCTTTGTGGAGATTCCTTTCATCAAGGATGCTTCGAAAGCTATTCAGAAAATGAAAATGAATGTCCTTGCTGTGTGTCCGAAAACAGAAAAGTTTTGGACATCATCAAGGCACAAGAACACAATAAAGATTTACATGAACAGTTTCATCACCAGCTGGAAAGATCAGCTGATGGATTCTCAGTCGTTGCTGATTATTTTGGAAGAGGAGTGTTCAATAAGGTTACAGTTCTCACAGATCCAGGCACGCAACAACCGATGGTGCCTGTTGACCCTTCAGTTCAGAGAGACAAACTGCTTCGCTGATTATAAATAGTAAGACTCAATTTAATTAGAAGTGAAATTAACTTAATTTCCAGGTATGTGGTAAGAGAACTTTATTCATTGGGCAGAAaatagacgttttagttattctacagaggactgtagatcaagcgatatttgtatacattttacccaaatttgacgacttttcgaatgtgcattggagtgataaaagttcttgggccggtcaaacgttctaagaaccttccggatactaatatgtgaagatgtatttcgattcagactctggtatagaaGATAAGTAGATATCAGAGACTAAACATATGGAGATTTCTGGAATACTTAACAGTGTCAACTTTGGAGGTCAGTTATCGGAATCTTTTGGATACACCACCCTTTCCAGTTTTACTAAACTGATACCTTTAATATATTGTTCCTCATGGCTCGTTTGGGGAATGTTCTTATTGCCCATTTGATAAAATATTTGAGGCTTTTTGACAAGTTACATCGGAGGATATCCTGGTCTCCAGGCAGACTTCCAATCGGAGCATTTTGTGTCAAAGATTAGATAACACATCGAATGAAACTTTTTGTGCACAGTCAGGGTTGATCTAGGAATCAGTAAAAAATTCTTGCTATATTTTGTTAACTTAAAACGCATCATTAATTGTAAATATGATTTATATTAAATATTTGATAATTCAATTTTGGTTAAGTTTTAAACAGGAGTACTTTTTGGACACCCACTGCTCCAACTCAACAAAATATTGCAGGTTTGAGACTATTGAAGAATTTAACAAAGAGATGCTACTGTTTTCCATTGTTCCATTTCAAGAAGAAGTTAAAGATATCCTACTTTGTAACAATAATAACACCCAAAAATCGTGTTACAGGAGTTAAAATTGTCAATTATATGAATTTAAAAGTATGCCATTTTTACTTCAGTTTCATTGAAAACTATCATTCACAACATTCAGTAAGTCTAACAGTTTGAACCATATATTTGTGATTAAAAGTATTTGTACGCCTATGCTGCTCATCACAGCTTATTCACCAAAAATTGTACTGTAATGCAGTTTAACTAAGATGTTCTGTTTACTTTTTTCGGCAAAGAAAAGTGCCATCACCAACTTGTAACAATGACACATCAACCCTTTCATCTTGCTTAATCTTCTTGTTCAAATTATTTAATGCTTTGGTAGATTCATCGAATCCTGCTTCATCCTGAGTGACTTTTCCACTCCAAAGGCAGTTATCCACAGCAATGATCCCCCCTTGTTTTAGAAGCACCAATGACTTTTCATAATACGCATCATAATTTGGTTTATCAGCATCAATAAATGCAAAATCAAATTGACCAGTTTGGCCCTCTTTAATCAGATTGTCAAGCGTTTCTGTTGCAGGAGCGATCTTTACTTTGATCTTCTTGAGGCATTCAGCATCCCAAAATGGTTTTCCTGTGTTGACGTATTTCTCCTCCACATCACAAGCAATCACCTCACCATCCTCTGGTAGTGCGTATGCGATGCTGCAAGCATTGTATCCAGTGAATGTGCCAATTTCAATACACCTAGGATGCAAAT

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12451 all species →	VPS11_C	Vacuolar protein sorting protein 11 C terminal	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR024763 all species →	Domain	Vacuolar protein sorting protein 11, C-terminal	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR000547 all species →	Repeat	Clathrin, heavy chain/VPS, 7-fold repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23323 all species →	VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan
GO:0016192 all species →	Biological Process	vesicle-mediated transport	Interproscan
GO:0005768 all species →	Cellular Component	endosome	Interproscan
GO:0006904 all species →	Biological Process	vesicle docking involved in exocytosis	Interproscan
GO:0007032 all species →	Biological Process	endosome organization	Interproscan
GO:0007033 all species →	Biological Process	vacuole organization	Interproscan
GO:0030674 all species →	Molecular Function	protein-macromolecule adaptor activity	Interproscan
GO:0030897 all species →	Cellular Component	HOPS complex	Interproscan
GO:0048284 all species →	Biological Process	organelle fusion	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for scaffold51.g30.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.