Gene detail

Detailed information of scaffold511.g7.t3 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold511:102927...124734
NR annotation: no NCBI-NR hit recorded
Species abbreviation AAURI2 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold511.g7.t3

cgcaaaatctaaaattgaattgatatattgatgaaaaaaataatggcgaatggaagaaggctgttgctgtgcgattgataccatgaaatttgcagaaagagcataacaacaagtgtcaatcagattgcatgaataagcaaggataaggctctaagcacaaaagattactggacataagaaattgcagtatggaatgagaaatatacctcaaccaaccaaccatgtaatcaaccatgtgatcaagaagaaagcgtggtttccctgacatgttatgaagtaaagtcaaaaatggaagagcaagaaaatgactaaaaatgtcaaagactaaggatgcatttggaattcagcccacagaaaagcagaagttgctgcttagtgcagcagaaaagggtagtttgcaagaagttgcaaaattattgcaaagtgatgaatcagtcactgaaagtagctatcttagtcaacaagatctcagcattgattcttgtgatgatgaaggtctcacaggactgcatatatcatgtgcaaatggacatgaagccgttgtgaggtttcttttaacaagaggtgcatcattggacctaaattgccgtcatggttggactcctttgatgtttgcagcttattatggccatcaaaacattgttcatctcctcactcaaagtaaagcgaatataaatgcctcaaatngtcaacaagatctcagcattgattcttgtgatgatgaaggtctcacaggactgcatatatcatgtgcaaatggacatgaagccgttgtgaggtttcttttaacaagaggtgcatcattggacctaaattgccgtcatggttggactcctttgatgtttgcagcttattatggccatcaaaacattgttcatctcctcactcaaagtaaagcgaatataaatgcctcaaatctcatgggtgccacacctcttttgtgtgcctgtagatgcggacatgccagaatcgcattgacccttttagaatttggtgctaacactgagcagctttgggaagatttcaacccccatgccacaactcctctcatcacagcagcacaacatggtcataaccaggttgtcaagattcttattgagcatggtgcagatgtaaatttccagcatcctgtcacaggatggacagcattaatgatggcttcattaaatgggcacttggatgttgtaaggatgcttgttgaagcagggagatctgacgtcaacatggaaaatgctgcagaccaaactgcattatgcgtggcttctcttcattgccgcagagatgtggaaagataccttgcaaaaaggacttcaaggaagcttgagagcaaagtttccaaaccatcaagaccacccatcatagaagctgccattgaaggaaagtatgacaaaataaaacaaattttgaaaaccaacagcaaagaagtaaatgcgcaagatggtgatggagccacagcattgatttatgcaagcatgaaaggtcacacagaaattgttgatttgttggtgagaaaaaatgcagatcttaatgtgcaagataaagttactgaatggacagcacttatgcaggcaacttgtaatgggcgtttggattgtataaatatactactgaaagccaatgctgacattaatctgaaagacaacaagacattaactgtgtttgatttggcaacaactgttggaaatcctgaaattattcgtcttcttgcacgaaaagcccttgaaaatgatagtggatttgtcagtgaagcaatacggggtatggcagctgatgaagaacaagacagtgaaaccaaaggatcagttaaggcttggatatcaaagatgatggctggcaaaatccaaccatggaaatcatcacgtaactcgttcccaacctctcgtgttccaccgcagccacctgatgggctcggcagctcccttgtcaatgaaaattcagatcctcaagcgttggttgatacttactcgctaagatcttcaagttctattttatcagttcttgatgcaaacaaaggcccaaaggagaaaccaaaagtcgcgcttgtttttcctcaaactaaactgccagatgatgtattggctccagttttatcacctttcccaagacgaacgagttttgaattgccaagaatgccaaaagatgctaaactttcaaacagtggaggagcagatgtgtctccgcagtcaatgattccgaggctacaagtcaatggaatgtacgttaatgatagtatcagtgatttcgattggaaagataaatctgatagtagcagttcagaaagtggcagtttactcaaacattctggctacggaagactaaccagccgtggtcaaatttcacaatcgatgaatttcatcgctgattccccagactcacctctttcttcgatgacatcaacaaattcatttttcacatcggtcagcaggcagaaaggaagacctgtcatgccttctgtatcaaatggcttcgtacggcgaccgataaaagctttccaacccgagccaccaactacatacacacagcctgtccggaatcgcagctacagccacaaacaaccatcacaacactcaagcactacgagctcagttgcctcggtaacaacatatcacagtgcaccagtgcagccatctttagttcccaggccaccttcaaagccacgcagccgttccacgtttccagcaatcacgcctcggaatgatgggtttcatgtgaacaaaggaagtcatgatgaatttgctgaaaatgaggttttcagaatgttagaacaattgtcattggagaaatatggaacaaagtttgaggaggaagagattgacatggaagcatttttaacaatgaatgacaatgacttacgatctctggggattaaacagatgacacacaggaaacaaattctagaagcaattcgagaattgaatgctggcaagggtaaatacaaggaacatacgcaaccactggtgcactctggaaggcacagattaaaacaacaaagaggatccatcgtttcagcaccaggacacattgatctgaatactcatcacatcgtcaatagacctaaaagatgatcatgatgatgcttggtatgacgtcatcgtagcaatgtgaaagtatcatcaggtcgaggctgttcgcagttaccaactcccttcaggagagaaaaccgcagaagaaaatatagcaaattagaaagtatgggacagattttatttgattcagcgatgtgaattccagaatatgattattctattaaccgaaggaacagaggtggaacaatatgtgttgtggattggcaggtacaatgtaaacgggagacggattgctgcgttgctgcacatctcgctttacatctaattttagacagactttactgaattttatgcttagtatttattaggaatattttagaataatttttgcacagtcgtctgtttttcggcattttaatcattgtatggggcttttcgtatggattaaaccgaaaaattatgcgaaaaattgaataaacgcaactagttttaatacacataaaaataagtcaatgttattattgttttatcataaacaccacaatcaaccttttatagactgtagacaactttccaacacagcaatagaacccttccttgcagtatttacttgattttggcatttggagaacaaagaaagtactcttcttcgaagcaatcacttgttgactttgggtggaaaaatgttttcatttctgggaccaaaacaagtcttgaaaaacatttctgtgagtatcgctctaaaagagtatacactttttgaaataccacgatgtgtaatgaatttgacagaatttggagattgattattgatcttcaatcacaatcgaaaatgatacttgttgggaaaattttgttgatttttcggctgacctcttccagatttgtttgggtcactcagatgctgtgaaacttcagcccagctgatgtagggaaatttttttgtcaaaagtatccaacgcacgatgttcagaaatcagctatagaattttatttcnnnnnnnnnnnnnnnnnnnnnnnn

Transcript

scaffold511.g7.t3

CGCAAAATCTAAAATTGAATTGATATATTGATGAAAAAAATAATGGCGAATGGAAGAAGGCTGTTGCTGTGCGATTGATACCATGAAATTTGCAGAAAGAGCATAACAACAAGTGTCAATCAGATTGCATGAATAAGCAAGGATAAGGCTCTAAGCACAAAAGATTACTGGACATAAGAAATTGCAGTATGGAATGAGAAATATACCTCAACCAACCAACCATGTAATCAACCATGTGATCAAGAAGAAAGCGTGGTTTCCCTGACATGTTATGAAGTAAAGTCAAAAATGGAAGAGCAAGAAAATGACTAAAAATGTCAAAGACTAAGGATGCATTTGGAATTCAGCCCACAGAAAAGCAGAAGTTGCTGCTTAGTGCAGCAGAAAAGGGTAGTTTGCAAGAAGTTGCAAAATTATTGCAAAGTGATGAATCAGTCACTGAAAGTAGCTATCTTAGTCAACAAGATCTCAGCATTGATTCTTGTGATGATGAAGGTCTCACAGGACTGCATATATCATGTGCAAATGGACATGAAGCCGTTGTGAGGTTTCTTTTAACAAGAGGTGCATCATTGGACCTAAATTGCCGTCATGGTTGGACTCCTTTGATGTTTGCAGCTTATTATGGCCATCAAAACATTGTTCATCTCCTCACTCAAAGTAAAGCGAATATAAATGCCTCAAATNGTCAACAAGATCTCAGCATTGATTCTTGTGATGATGAAGGTCTCACAGGACTGCATATATCATGTGCAAATGGACATGAAGCCGTTGTGAGGTTTCTTTTAACAAGAGGTGCATCATTGGACCTAAATTGCCGTCATGGTTGGACTCCTTTGATGTTTGCAGCTTATTATGGCCATCAAAACATTGTTCATCTCCTCACTCAAAGTAAAGCGAATATAAATGCCTCAAATCTCATGGGTGCCACACCTCTTTTGTGTGCCTGTAGATGCGGACATGCCAGAATCGCATTGACCCTTTTAGAATTTGGTGCTAACACTGAGCAGCTTTGGGAAGATTTCAACCCCCATGCCACAACTCCTCTCATCACAGCAGCACAACATGGTCATAACCAGGTTGTCAAGATTCTTATTGAGCATGGTGCAGATGTAAATTTCCAGCATCCTGTCACAGGATGGACAGCATTAATGATGGCTTCATTAAATGGGCACTTGGATGTTGTAAGGATGCTTGTTGAAGCAGGGAGATCTGACGTCAACATGGAAAATGCTGCAGACCAAACTGCATTATGCGTGGCTTCTCTTCATTGCCGCAGAGATGTGGAAAGATACCTTGCAAAAAGGACTTCAAGGAAGCTTGAGAGCAAAGTTTCCAAACCATCAAGACCACCCATCATAGAAGCTGCCATTGAAGGAAAGTATGACAAAATAAAACAAATTTTGAAAACCAACAGCAAAGAAGTAAATGCGCAAGATGGTGATGGAGCCACAGCATTGATTTATGCAAGCATGAAAGGTCACACAGAAATTGTTGATTTGTTGGTGAGAAAAAATGCAGATCTTAATGTGCAAGATAAAGTTACTGAATGGACAGCACTTATGCAGGCAACTTGTAATGGGCGTTTGGATTGTATAAATATACTACTGAAAGCCAATGCTGACATTAATCTGAAAGACAACAAGACATTAACTGTGTTTGATTTGGCAACAACTGTTGGAAATCCTGAAATTATTCGTCTTCTTGCACGAAAAGCCCTTGAAAATGATAGTGGATTTGTCAGTGAAGCAATACGGGGTATGGCAGCTGATGAAGAACAAGACAGTGAAACCAAAGGATCAGTTAAGGCTTGGATATCAAAGATGATGGCTGGCAAAATCCAACCATGGAAATCATCACGTAACTCGTTCCCAACCTCTCGTGTTCCACCGCAGCCACCTGATGGGCTCGGCAGCTCCCTTGTCAATGAAAATTCAGATCCTCAAGCGTTGGTTGATACTTACTCGCTAAGATCTTCAAGTTCTATTTTATCAGTTCTTGATGCAAACAAAGGCCCAAAGGAGAAACCAAAAGTCGCGCTTGTTTTTCCTCAAACTAAACTGCCAGATGATGTATTGGCTCCAGTTTTATCACCTTTCCCAAGACGAACGAGTTTTGAATTGCCAAGAATGCCAAAAGATGCTAAACTTTCAAACAGTGGAGGAGCAGATGTGTCTCCGCAGTCAATGATTCCGAGGCTACAAGTCAATGGAATGTACGTTAATGATAGTATCAGTGATTTCGATTGGAAAGATAAATCTGATAGTAGCAGTTCAGAAAGTGGCAGTTTACTCAAACATTCTGGCTACGGAAGACTAACCAGCCGTGGTCAAATTTCACAATCGATGAATTTCATCGCTGATTCCCCAGACTCACCTCTTTCTTCGATGACATCAACAAATTCATTTTTCACATCGGTCAGCAGGCAGAAAGGAAGACCTGTCATGCCTTCTGTATCAAATGGCTTCGTACGGCGACCGATAAAAGCTTTCCAACCCGAGCCACCAACTACATACACACAGCCTGTCCGGAATCGCAGCTACAGCCACAAACAACCATCACAACACTCAAGCACTACGAGCTCAGTTGCCTCGGTAACAACATATCACAGTGCACCAGTGCAGCCATCTTTAGTTCCCAGGCCACCTTCAAAGCCACGCAGCCGTTCCACGTTTCCAGCAATCACGCCTCGGAATGATGGGTTTCATGTGAACAAAGGAAGTCATGATGAATTTGCTGAAAATGAGGTTTTCAGAATGTTAGAACAATTGTCATTGGAGAAATATGGAACAAAGTTTGAGGAGGAAGAGATTGACATGGAAGCATTTTTAACAATGAATGACAATGACTTACGATCTCTGGGGATTAAACAGATGACACACAGGAAACAAATTCTAGAAGCAATTCGAGAATTGAATGCTGGCAAGGGTAAATACAAGGAACATACGCAACCACTGGTGCACTCTGGAAGGCACAGATTAAAACAACAAAGAGGATCCATCGTTTCAGCACCAGGACACATTGATCTGAATACTCATCACATCGTCAATAGACCTAAAAGATGATCATGATGATGCTTGGTATGACGTCATCGTAGCAATGTGAAAGTATCATCAGGTCGAGGCTGTTCGCAGTTACCAACTCCCTTCAGGAGAGAAAACCGCAGAAGAAAATATAGCAAATTAGAAAGTATGGGACAGATTTTATTTGATTCAGCGATGTGAATtccagaatatgattattctattaaccgaaggaacagaggtggaacaatatgtgttgtggattggcaggtacaatgtaaacgggagacggatTGCTGCGTTGCTGCACATCTCGCTTTACATCTAATTTTAGACAGACTTTACTGAATTTTATGCTTAGTATTTATTAGGAATATTTTAGAATAATTTTTGCACAGTCGTCTGTTTTTCGGCATTTTAATCATTGTATGGGGCTTTTCGTATGGATTAAACCGAAAAATTATGCGAAAAATTGAATAAACGCAACTAGttttaatacacataaaaataagtcaatgttattattgttttatcataaacaccacaatcaaccttttatagactgtagacaactttccaacacagcaatagaacccttccttgcagtatttacttgattttggcatttggagaacaaagaaagtactcttcttcgaagcaatcacttgttgactttgggtggaaaaatgttttcatttctgggaccaaaacaagtcttgaaaaacatttctgtgagtatcgctctaaaagagtatacactttttgaaataccacgatgtgtaatgaatttgacagaatttggagattgattattgatcttcaatcacaatcgaaaatgatacttgttgggaaaattttgttgatttttcggctgacctcttccagatttgtTTGGGTCACTCAGATGCTGTGAAACTTCAGCCCAGCTGATGTAGGGAAATTTTTTTGTCAAAAGTATCCAACGCACGATGTTCAGAAATCAGCTATAGAATTTTATTTCNNNNNNNNNNNNNNNNNNNNNNNN

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF13637 all species →	Ank_4	Ankyrin repeats (many copies)	Repeat	Interproscan
PF00023 all species →	Ank	Ankyrin repeat	Repeat	Interproscan
PF00536 all species →	SAM_1	SAM domain (Sterile alpha motif)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR013761 all species →	Homologous_superfamily	Sterile alpha motif/pointed domain superfamily	Interproscan
IPR050842 all species →	Family	Cul2-RING E3 Ligase Substrate-Recognition Fem-1	Interproscan
IPR001660 all species →	Domain	Sterile alpha motif domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24173 all species →	ANKYRIN REPEAT CONTAINING	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K21415	ANKS6; ankyrin repeat and SAM domain-containing protein 6	-	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.