Gene detail

Detailed information of scaffold52.g12.t2 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold52:106569...150354
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold52.g12.t2

tagctaagtaaatggaaaatgttaggtatcctcgagtatttgatatagatgggggggggggcttatttaaaaatttggctcgaaggaaggaggatattagagaggggagctatgtaaatagagcttttgtcgtatttatagaccgtatcatatagttgggatcattccctttgggaaaacgaagttacgagctgtcgctaatgtaatattgtatttatcttgatttctgtatattttatcagggtgtaacaagtttgaatacatacccattgagttttatacatttagagttatgcgttatacatagtggatttacatataaaattgggatgtttttatattgttgttttcccaagaggcacattgttgattctgtatatgtttttaaaataggcttcatgttttttataagaactggagtaaaactgattgttacattttgaattgtctgtcttgactccagaactggacaggcaaagatgggacaagacaaaaacaaagcgctgatactcattattctcggcattcttgcagttggcttacgcatagctaatggagggactccagtaagatatgatatacttcagaatggaccactgtgcaacaaaccaggggcagctttgaaaaacccagaatgcaattggcattaccttgcatatactcctcggatcttcaggggtggcgtaaaagagaaagttttattcatgacacataatgtgaattttgatgttgtgattgaagcaaaactggtgaaaacaaggggctcaaatgaaattgcatcatctggaaaagttattgcaaaaccaggccagctgacagagcttctcttgaaggtgccagttgatgcaccctccaaagggattgtaaagattgaagggtccgccactgtacctaatggaacaaatggccttactaaacctacaaaatggttgttcaacaatcaaaccaaggaaattgaaatcaagaaaacaagtacctctgtgttcattcaaagtgacagaccaatatacaagccaggagagacaatacaaatgcgtatcgttgcagtggacagcaatctaaaagcagtgaaaggaaaggtatcaaaggtgtcagttttgaatccttctcaaactttaatgagacaatggtcagatgtgaaactcaagggaggtattgcaagtttgaaactgaaattaacaatcaaaccagttcttggagtatggagaataaaggccgttgtcaatggtatttacaaaacgattcaagtgaaggtcgaaaagtacgttcttccaaagttccaagtgctaattaagccaccgccattcattgcattgggatcactaaaagttgatggagaaatctgtgcaaagtattcttatggaaagaatgtgaatggtttgttgaaagcaaaaatatgtgcgcgtcaccctgcatactggagaagaggatggcaaaaagagctaacaatatgtgaagacatcaaaagaacgatctatggttgtacaccattggaaattgatcttcgttatttcaaagtttatgaatatactggttggtcacccataaaattcacaattcaagcttcagtcgaagaaaaagcaactggaatcgctttaaatgcaacgaaaaaggaacttaaagtccataaaagcccagttaaactttcatttgaaggaacaccagatattttcaagccagggcttcctttcaatgcgcaggttggttctgaagctaacatcaaagtacgatacacgacagtagatagagacccaaccaatcgcactgtttattattcgctaatgtgtaaaggatatgcaacgcagtctggaagcatagtcactgaattcgttggtgcaaactaccgatcagatggcacaagaatcgaggatgtattaccgaccacagccgaaataccgaagagtacagctcaacaaaccaaaccgaaaccaacgaagccggatagaactgaaccggaacaaaccttaccggacatgacaacaacagaacctcctacaacaataccttatatcgaggatatatatttgccatattggctacgcaaaacagtaacaagaccacctttaccaaaacgattctcatctgcttcttttaacattaaattcaaagttacgcaagagatgtcgccatcttgtcgaatgcttgtttattacgtaagaaatgcagagaatgttgctgacagtacggttgttgatgtagaggattcctttgcaaatgaggtatccatgaaatttgctaaaggagaagttttcccaggcacaaaagtcaagttgtctctaaaagcatcaccagggtctcgatttgctatttctgccgtcgacaaaagtgttcatttccttgccaatgcaaatgatcttaaaacaagtcaggttggttctgaagctaacatcaaagtacgatacacgacagtagatagagacccaaccaatcgcactgtttattattcgctgatgtgtaaaggatacgcaacgcagtctggaagcatagtcactgaattcgttggcgcaaactaccgatcagatggcacaagaatcgaggatttattaccgaccacagccgaaataccgaagagtacagctcaacaaaccaaaccgaaaccaacgaagccggatagaactgaaccggaacaaaccttaccggacatgacaacaacggaacctcctacaacagtaccttatatcgagggaatatatccggatatatatctgccatattggctacgcaaaacagcaacaagaccacctttaccaaaacgattctcatctgcttcttttaacattaaattcaaagttacgcaagagatgtcgccatcttgtcgaatgcttgtttattacgtaagaaatgcagagaatgttgctgacagtacggttgttgatgtggaggattcctttgcaaatgaggtatccatgaaatttgctaaaggagaagttttcccaggcacaaaagtcaagttgtctctaaaagcatcaccagggtctcgatttgctatttctgccgtcgacaaaagtgttcatttccttgccaatgcaaatgatcttaaaacaagtcaggtatccatgaaatttgctaaaggagaagttttcccaggcacaaaagtcaagttgtctctaaaagcatcaccagggtctcgatttgctatttctgccgtcgacaaaagtgttcatttccttgccaatgcaaatgatcttaaaacaagtcaggtttctggaattttgaaaagtcttgatgtaggaccagggaacatcaacgacggagatcgatgtggaggtggtggcagcagatggtattgggggtatcacaggcaatcggattttgttgattcacaaaaagcttttaacgagggtggattgatgtttatgtccaatttggtggttgacagccgtccgtgcgaagatccgaagaatattccagttccagtctatgcatacaatgtgggcacagaagagcggcctgtgctggaaacagatggcccggctggaggtaaacagaataccaagaaaaaatttgtaccgaaacccaaacctaagcctaaagttcgtagtgagttccctgaaacatggttgtggactgaagaaaccgtagacgaaaaaacaggagagaaaattgtggaggtgaaagttcctgacacgataacaacatggtatgcaagtggatttgctatatctgatcaagatggcttaggcgttgcgaaccctgctgaaattcgcggattcaaagctgttttcgtatcggtcaatttaccttattctgtcgtcagaggagaaatggttactatccctgttgttgcgttcaattatctcgacgtttgcttaaatgttcgattgtcgatgaaaatttcgaaagatttcaaatccagaactcgaaattatgcaaatgtttgcttatgtgctggcaaatctgctaccgttatgttcaagataattgcacaaaaattaggccgtatcaacatcgaagcaactgctcaaagcgtccccaagaacaattgcccaagttttgtcagttttgatccaaccacacacattgatattgtcagaaagaagttattggtcgagcctgaaggtatcgaagaggagtacacttggaactcattggtttgtccaaatgacaaaatggtgtcggaaaaagcaaagcttgaaattccagctaacgtcgtccccgaatctgtttactcagaattaagagttataggtgacttaatgggaccaagtttgtctaatatcgatagcctgttgaagatgccatatggttgtggcgaacaaaacatgttgaatttcgcgccaaatattttcataatgcagtacctgaaagcaaccaatcagctgactgaagcaatcaaagacaaagctactggctacacccttcaaggttaccaacgagaactttcctacaaacattcagatggttcttacagtgcttttggagacagagatccagaagggagcatgtggttaactgcatttgtgttgaaatcctttgccgaagctcgtgactttattgaaatcgacaagaaaattatggctgaagcaaaacgatggattttacgcaagcaatcaaaggatggatgtttcccaactgttggatccctccataataaagctatgaagggaggagtaaaaagccccgtcacattgactggatatgttgtgctatcattactggaagcgggcatgcccccgaagaattctcacatagctcgagcaatcaacagatgtatagtgccagagttgaaaaacataaacgatacttactcattgacaattttatcgtatacattgatgaaagcaggccgacagcaagaacttaattatctgcttaaaaggttggaaagtgctgccatcaaaaaggacggtacacgacattgggaagagcaaaaaccaaaagagaaaaagactgcaccaatttcctggtggtctgccccgtattaccaagcaagttctgcagatattgaaatgtccgcttatgcattgatggcactcgtaccggagggtgacaaggcagcagctgtagccagtgtagacattgttaaatggttgtcgcagcaaagaaatagtcttggaggatggtcatctacgcaggtaagctaattttcttggcattggcttcttcaaagcattacccccctctcctgtctacccaggtaagctaattttcttggcttcttcaaagtatttccccctctcctgtctacccaggtaagctaattttcttggcttcttcaaagtatttccccctctcctgtctacccaggtaagctaattttcttggcttcttcaaagtatttccccctctcctgtctacccaggtaagctaattttcttggcttcttcaaagtatttccccctctcctgtctacccaggtaagctaattttcttggcttcttcaaagtatttccccctctcctgtctacccaggtaagctaattttcttggcttcttcaaagtatttccccctctcctgtctacccaggtaagctaattttcttggcttcttcaaagtatttccccctctcctgtctacccaggtaagctaattttcttggcttcttcaaagtatttccccctctcctgtctacccaggtaagctaattttcttggcttcttcaaaacattgcccctcctgtttacccaggtaagctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctattcttctagtaaatttatatttctaat

Transcript

scaffold52.g12.t2

tagctaagtaaatggaaaatgttaggtatcctcgagtatttgatatagatgggggggggggcttatttaaaaatttggctcgaaggaaggaggatattagagaggggagctatgtaaatagagcttTTGTCGTATTTATAGACCGTATCATATAGTTGGGATCATTCCCTTTGGGAAAACGAAGTTACGAGCTGTCGCTAATGTAATATTGTATTTATCTTGATTTCTGTATATTTTATCAGGGTGTAACAAGTTTGAATACATACCCATTGAGTTTTATACATTTAGAGTTATGCGTTATACATAGTGGATTTACATATAAAATTGGGATGTTTTTATATTGTTGTTTTCCCAAGAGGCACATTGTTGATTCTGTATATGTTTTTAAAATAGGCTTCATGTTTTTTATAAGAACTGGAGTAAAACTGATTGTTACATTTTGAATTGTCTGTCTTGACTCCAGAACTGGACAGGCAAAGATGGGACAAGACAAAAACAAAGCGCTGATACTCATTATTCTCGGCATTCTTGCAGTTGGCTTACGCATAGCTAATGGAGGGACTCCAGTAAGATATGATATACTTCAGAATGGACCACTGTGCAACAAACCAGGGGCAGCTTTGAAAAACCCAGAATGCAATTGGCATTACCTTGCATATACTCCTCGGATCTTCAGGGGTGGCGTAAAAGAGAAAGTTTTATTCATGACACATAATGTGAATTTTGATGTTGTGATTGAAGCAAAACTGGTGAAAACAAGGGGCTCAAATGAAATTGCATCATCTGGAAAAGTTATTGCAAAACCAGGCCAGCTGACAGAGCTTCTCTTGAAGGTGCCAGTTGATGCACCCTCCAAAGGGATTGTAAAGATTGAAGGGTCCGCCACTGTACCTAATGGAACAAATGGCCTTACTAAACCTACAAAATGGTTGTTCAACAATCAAACCAAGGAAATTGAAATCAAGAAAACAAGTACCTCTGTGTTCATTCAAAGTGACAGACCAATATACAAGCCAGGAGAGACAATACAAATGCGTATCGTTGCAGTGGACAGCAATCTAAAAGCAGTGAAAGGAAAGGTATCAAAGGTGTCAGTTTTGAATCCTTCTCAAACTTTAATGAGACAATGGTCAGATGTGAAACTCAAGGGAGGTATTGCAAGTTTGAAACTGAAATTAACAATCAAACCAGTTCTTGGAGTATGGAGAATAAAGGCCGTTGTCAATGGTATTTACAAAACGATTCAAGTGAAGGTCGAAAAGTACGTTCTTCCAAAGTTCCAAGTGCTAATTAAGCCACCGCCATTCATTGCATTGGGATCACTAAAAGTTGATGGAGAAATCTGTGCAAAGTATTCTTATGGAAAGAATGTGAATGGTTTGTTGAAAGCAAAAATATGTGCGCGTCACCCTGCATACTGGAGAAGAGGATGGCAAAAAGAGCTAACAATATGTGAAGACATCAAAAGAACGATCTATGGTTGTACACCATTGGAAATTGATCTTCGTTATTTCAAAGTTTATGAATATACTGGTTGGTCACCCATAAAATTCACAATTCAAGCTTCAGTCGAAGAAAAAGCAACTGGAATCGCTTTAAATGCAACGAAAAAGGAACTTAAAGTCCATAAAAGCCCAGTTAAACTTTCATTTGAAGGAACACCAGATATTTTCAAGCCAGGGCTTCCTTTCAATGCGCAGGTTGGTTCTGAAGCTAACATCAAAGTACGATACACGACAGTAGATAGAGACCCAACCAATCGCACTGTTTATTATTCGCTAATGTGTAAAGGATATGCAACGCAGTCTGGAAGCATAGTCACTGAATTCGTTGGTGCAAACTACCGATCAGATGGCACAAGAATCGAGGATGTATTACCGACCACAGCCGAAATACCGAAGAGTACAGCTCAACAAACCAAACCGAAACCAACGAAGCCGGATAGAACTGAACCGGAACAAACCTTACCGGACATGACAACAACAGAACCTCCTACAACAATACCTTATATCGAGGATATATATTTGCCATATTGGCTACGCAAAACAGTAACAAGACCACCTTTACCAAAACGATTCTCATCTGCTTCTTTTAACATTAAATTCAAAGTTACGCAAGAGATGTCGCCATCTTGTCGAATGCTTGTTTATTACGTAAGAAATGCAGAGAATGTTGCTGACAGTACGGTTGTTGATGTAGAGGATTCCTTTGCAAATGAGGTATCCATGAAATTTGCTAAAGGAGAAGTTTTCCCAGGCACAAAAGTCAAGTTGTCTCTAAAAGCATCACCAGGGTCTCGATTTGCTATTTCTGCCGTCGACAAAAGTGTTCATTTCCTTGCCAATGCAAATGATCTTAAAACAAGTCAGGTTGGTTCTGAAGCTAACATCAAAGTACGATACACGACAGTAGATAGAGACCCAACCAATCGCACTGTTTATTATTCGCTGATGTGTAAAGGATACGCAACGCAGTCTGGAAGCATAGTCACTGAATTCGTTGGCGCAAACTACCGATCAGATGGCACAAGAATCGAGGATTTATTACCGACCACAGCCGAAATACCGAAGAGTACAGCTCAACAAACCAAACCGAAACCAACGAAGCCGGATAGAACTGAACCGGAACAAACCTTACCGGACATGACAACAACGGAACCTCCTACAACAGTACCTTATATCGAGGGAATATATCCGGATATATATCTGCCATATTGGCTACGCAAAACAGCAACAAGACCACCTTTACCAAAACGATTCTCATCTGCTTCTTTTAACATTAAATTCAAAGTTACGCAAGAGATGTCGCCATCTTGTCGAATGCTTGTTTATTACGTAAGAAATGCAGAGAATGTTGCTGACAGTACGGTTGTTGATGTGGAGGATTCCTTTGCAAATGAGGTATCCATGAAATTTGCTAAAGGAGAAGTTTTCCCAGGCACAAAAGTCAAGTTGTCTCTAAAAGCATCACCAGGGTCTCGATTTGCTATTTCTGCCGTCGACAAAAGTGTTCATTTCCTTGCCAATGCAAATGATCTTAAAACAAGTCAGGTATCCATGAAATTTGCTAAAGGAGAAGTTTTCCCAGGCACAAAAGTCAAGTTGTCTCTAAAAGCATCACCAGGGTCTCGATTTGCTATTTCTGCCGTCGACAAAAGTGTTCATTTCCTTGCCAATGCAAATGATCTTAAAACAAGTCAGGTTTCTGGAATTTTGAAAAGTCTTGATGTAGGACCAGGGAACATCAACGACGGAGATCGATGTGGAGGTGGTGGCAGCAGATGGTATTGGGGGTATCACAGGCAATCGGATTTTGTTGATTCACAAAAAGCTTTTAACGAGGGTGGATTGATGTTTATGTCCAATTTGGTGGTTGACAGCCGTCCGTGCGAAGATCCGAAGAATATTCCAGTTCCAGTCTATGCATACAATGTGGGCACAGAAGAGCGGCCTGTGCTGGAAACAGATGGCCCGGCTGGAGGTAAACAGAATACCAAGAAAAAATTTGTACCGAAACCCAAACCTAAGCCTAAAGTTCGTAGTGAGTTCCCTGAAACATGGTTGTGGACTGAAGAAACCGTAGACGAAAAAACAGGAGAGAAAATTGTGGAGGTGAAAGTTCCTGACACGATAACAACATGGTATGCAAGTGGATTTGCTATATCTGATCAAGATGGCTTAGGCGTTGCGAACCCTGCTGAAATTCGCGGATTCAAAGCTGTTTTCGTATCGGTCAATTTACCTTATTCTGTCGTCAGAGGAGAAATGGTTACTATCCCTGTTGTTGCGTTCAATTATCTCGACGTTTGCTTAAATGTTCGATTGTCGATGAAAATTTCGAAAGATTTCAAATCCAGAACTCGAAATTATGCAAATGTTTGCTTATGTGCTGGCAAATCTGCTACCGTTATGTTCAAGATAATTGCACAAAAATTAGGCCGTATCAACATCGAAGCAACTGCTCAAAGCGTCCCCAAGAACAATTGCCCAAGTTTTGTCAGTTTTGATCCAACCACACACATTGATATTGTCAGAAAGAAGTTATTGGTCGAGCCTGAAGGTATCGAAGAGGAGTACACTTGGAACTCATTGGTTTGTCCAAATGACAAAATGGTGTCGGAAAAAGCAAAGCTTGAAATTCCAGCTAACGTCGTCCCCGAATCTGTTTACTCAGAATTAAGAGTTATAGGTGACTTAATGGGACCAAGTTTGTCTAATATCGATAGCCTGTTGAAGATGCCATATGGTTGTGGCGAACAAAACATGTTGAATTTCGCGCCAAATATTTTCATAATGCAGTACCTGAAAGCAACCAATCAGCTGACTGAAGCAATCAAAGACAAAGCTACTGGCTACACCCTTCAAGGTTACCAACGAGAACTTTCCTACAAACATTCAGATGGTTCTTACAGTGCTTTTGGAGACAGAGATCCAGAAGGGAGCATGTGGTTAACTGCATTTGTGTTGAAATCCTTTGCCGAAGCTCGTGACTTTATTGAAATCGACAAGAAAATTATGGCTGAAGCAAAACGATGGATTTTACGCAAGCAATCAAAGGATGGATGTTTCCCAACTGTTGGATCCCTCCATAATAAAGCTATGAAGGGAGGAGTAAAAAGCCCCGTCACATTGACTGGATATGTTGTGCTATCATTACTGGAAGCGGGCATGCCCCCGAAGAATTCTCACATAGCTCGAGCAATCAACAGATGTATAGTGCCAGAGTTGAAAAACATAAACGATACTTACTCATTGACAATTTTATCGTATACATTGATGAAAGCAGGCCGACAGCAAGAACTTAATTATCTGCTTAAAAGGTTGGAAAGTGCTGCCATCAAAAAGGACGGTACACGACATTGGGAAGAGCAAAAACCAAAAGAGAAAAAGACTGCACCAATTTCCTGGTGGTCTGCCCCGTATTACCAAGCAAGTTCTGCAGATATTGAAATGTCCGCTTATGCATTGATGGCACTCGTACCGGAGGGTGACAAGGCAGCAGCTGTAGCCAGTGTAGACATTGTTAAATGGTTGTCGCAGCAAAGAAATAGTCTTGGAGGATGGTCATCTACGCAGGTAAGCTAATTTTCTTGGCATTGGCTTCTTCAAAGCATTACCCCCCTCTCCTGTCTACCCAGGTAAGCTAATTTTCTTGGCTTCTTCAAAGTATTTCCCCCTCTCCTGTCTACCCAGGTAAGCTAATTTTCTTGGCTTCTTCAAAGTATTTCCCCCTCTCCTGTCTACCCAGGTAAGCTAATTTTCTTGGCTTCTTCAAAGTATTTCCCCCTCTCCTGTCTACCCAGGTAAGCTAATTTTCTTGGCTTCTTCAAAGTATTTCCCCCTCTCCTGTCTACCCAGGTAAGCTAATTTTCTTGGCTTCTTCAAAGTATTTCCCCCTCTCCTGTCTACCCAGGTAAGCTAATTTTCTTGGCTTCTTCAAAGTATTTCCCCCTCTCCTGTCTACCCAGGTAAGCTAATTTTCTTGGCTTCTTCAAAGTATTTCCCCCTCTCCTGTCTACCCAGGTAAGCTAATTTTCTTGGCTTCTTCAAAGTATTTCCCCCTCTCCTGTCTACCCAGGTAAGCTAATTTTCTTGGCTTCTTCAAAACATTGCCCCTCCTGTTTACCCAGGTAAGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTATTCTTCTAGTAAATTTATATTTCTAAT

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00207 all species →	A2M	Alpha-2-macroglobulin family	Family	Interproscan
PF07678 all species →	TED_complement	A-macroglobulin TED domain	Repeat	Interproscan
PF17791 all species →	MG3	Macroglobulin domain MG3	Domain	Interproscan
PF07703 all species →	A2M_BRD	Alpha-2-macroglobulin bait region domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011625 all species →	Domain	Alpha-2-macroglobulin, bait region domain	Interproscan
IPR001599 all species →	Domain	Alpha-2-macroglobulin	Interproscan
IPR050473 all species →	Family	Alpha-2-macroglobulin/Complement system	Interproscan
IPR011626 all species →	Domain	Alpha-macroglobulin-like, TED domain	Interproscan
IPR041555 all species →	Domain	Macroglobulin domain MG3	Interproscan
IPR014756 all species →	Homologous_superfamily	Immunoglobulin E-set	Interproscan
IPR041813 all species →	Domain	Alpha-2-macroglobulin, TED domain	Interproscan
IPR008930 all species →	Homologous_superfamily	Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid	Interproscan
IPR019742 all species →	Conserved_site	Alpha-2-macroglobulin, conserved site	Interproscan
IPR047565 all species →	Conserved_site	Alpha-macroglobulin-like, thiol-ester bond-forming region	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11412 all species →	MACROGLOBULIN / COMPLEMENT	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004866 all species →	Molecular Function	endopeptidase inhibitor activity	Interproscan
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for scaffold52.g12.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.