Gene detail

Detailed information of scaffold52.g3.t1 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold52:38553...53644
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold52.g3.t1

agtcataatttctattacattttgagcacttcaaacattttcttgaaggatgtcctgcgaagagttatgcccagtgtgtcacctacagcatttgaatatgaagatgaagatagagacagaataacagttagaagtgatgatgaattacgagcaatgattcagtggcatcaatggatgaattcacaaagagtttgcaatggaattggaattcttccattacttatctatcctagggtcagcagatcttctggaagaaggaacatgatgggattaactgttgatgtagatgcagccccaacaccccaagcaaacagacagggaagtggtggaggatcgagtgggaggaaacaaccaggagatattcagaatatcttatcaagtggacacatttaccaacaagacattgagtatctggagttgatgggatttggtaatgctggaaccgtttacaggtgtgttcacattcccactcaaagagtcatggctacaaaggttattccactagatgtttcaatagatgttcaaagacagatcatttcagaacttgacatcttatttcagtctcgttctccctttataattggcttctatggtgctttctttacagaacgcaaaatttccatttgtactgaatatatggatggtggatcgttagacaactatggtgctattccagagatcgttttagcacgaatatcggtgtctgttgtcaaagggctgcaatatctgtggaacctcaaagttatgcatagagacgtaaaaccatccaatatgctcgttaacacgaatgggaaagtaaaaatttgtgactttggcgttagcatacaattggtaaattctattgcaaagacatatgtcggtaccaatgcttatatggcaccagaaaggatacttggggaagaatatggaatacattccgatgtttggagtttagctctttcacttgtagagatggcaacaggaaaatttccttatccatcggattctacgcgacaaggtgaagacttgagggcaatagaattgttgcaatgtatagtacatgagcaatttaaccccaaagctgtcataatcaaattacatcggtctatcttatcactcaaacatttatttgatatgtgtggggaggcacggggagacgtaaaaccatccaatatgctcgttaacacgaatgggaaagtaaaaatttgtgactttggcgttagcatacaattggtaaattctattgcaaagacatatgtcggtaccaatgcttatatggcaccagaaaggatacttggggaagaatatggaatacattccgatgtttggagtttagctctttcacttgtagagatggcaacaggaaaatttccttatccatcggattctacgcgacaaggtgaagacttgagggcaatagaattgttgcaatgtatagtacatgaggatgcacctaaactttctacgcaatgttttggacatgaatttgttgatttcgtttcaagctgcttgagcaaagcaccacaaggacgtccaaaaccagaacaactcttagagcatgaatttatcaagaagaatgatgacggtagagatgactttattgcaagtttcgtaacccaaaagttggcagaaaggagaacttcgaaccagcgataaccaaatttgttatttatttcaaaagcacatcagtaaccttacgggtctttgtacaaccagagaatctaattttcgtgtagtgattatgaacattctttgcacttaagcaaatttgttgactcagtaataggcaaataggtatcaccaagtcccagaacacactaagaaaatgcgtaataagtgttgtatatttggggtgtcccagaaactcgtggcccgtttgtgtggctagtgtgggggccttgtttgggccaatctgacaagtggttactgatttatggcagaggaaaggcaaaagcaaccatatacttttgaagcaaccacttttcctctgccataaataagcaaccacttatcaaattgactcacagaaggtctcacactctgatctgtgcagctgtgtgaaaatggagacaatcagtacagctcttccacaacagccacacaaatgaggcacaattttttgggacaccctgtaaaatatagtccccccccctcatgttacttttgtatagtagtattatgaagccttattgtaactgaaaaaatcttttatttcagtccagttgcgcacgagtacataattgccgttttactattttgacacatagataatagaagtatgtacgttat

Transcript

scaffold52.g3.t1

AGTCATAATTTCTATTACATTTTGAGCACTTCAAACATTTTCTTGAAGGATGTCCTGCGAAGAGTTATGCCCAGTGTGTCACCTACAGCATTTGAATatgaagatgaagatagagacagaataacagttagaagtgatgatgaaTTACGAGCAATGATTCAGTGGCATCAATGGATGAATTCACAAAGAGTTTGCAATGGAATTGGAATTCTTCCATTACTTATCTATCCTAGGGTCAGCAGATCTTCTGGAAGAAGGAACATGATGGGATTAACTGTTGATGTAGATGCAGCCCCAACACCCCAAGCAAACAGACAGGGAAGTGGTGGAGGATCGAGTGGGAGGAAACAACCAGGAGATATTCAGAATATCTTATCAAGTGGACACATTTACCAACAAGACATTGAGTATCTGGAGTTGATGGGATTTGGTAATGCTGGAACCGTTTACAGGTGTGTTCACATTCCCACTCAAAGAGTCATGGCTACAAAGGTTATTCCACTAGATGTTTCAATAGATGTTCAAAGACAGATCATTTCAGAACTTGACATCTTATTTCAGTCTCGTTCTCCCTTTATAATTGGCTTCTATGGTGCTTTCTTTACAGAACGCAAAATTTCCATTTGTACTGAATATATGGATGGTGGATCGTTAGACAACTATGGTGCTATTCCAGAGATCGTTTTAGCACGAATATCGGTGTCTGTTGTCAAAGGGCTGCAATATCTGTGGAACCTCAAAGTTATGCATAGAGACGTAAAACCATCCAATATGCTCGTTAACACGAATGGGAAAGTAAAAATTTGTGACTTTGGCGTTAGCATACAATTGGTAAATTCTATTGCAAAGACATATGTCGGTACCAATGCTTATATGGCACCAGAAAGGATACTTGGGGAAGAATATGGAATACATTCCGATGTTTGGAGTTTAGCTCTTTCACTTGTAGAGATGGCAACAGGAAAATTTCCTTATCCATCGGATTCTACGCGACAAGGTGAAGACTTGAGGGCAATAGAATTGTTGCAATGTATAGTACATGAGcaaTTTAACCCCAAAGCTGTCATAATCAAATTACATCGGTCTATCTTATCACTCAAACATTTATTTGATATGTGTGGGGAGGCACGGGGAGACGTAAAACCATCCAATATGCTCGTTAACACGAATGGGAAAGTAAAAATTTGTGACTTTGGCGTTAGCATACAATTGGTAAATTCTATTGCAAAGACATATGTCGGTACCAATGCTTATATGGCACCAGAAAGGATACTTGGGGAAGAATATGGAATACATTCCGATGTTTGGAGTTTAGCTCTTTCACTTGTAGAGATGGCAACAGGAAAATTTCCTTATCCATCGGATTCTACGCGACAAGGTGAAGACTTGAGGGCAATAGAATTGTTGCAATGTATAGTACATGAGGATGCACCTAAACTTTCTACGCAATGTTTTGGACATGAATTTGTTGATTTCGTTTCAAGCTGCTTGAGCAAAGCACCACAAGGACGTCCAAAACCAGAACAACTCTTAGAGCATGAATTTATCAAGAAGAATGATGACGGTAGAGATGACTTTATTGCAAGTTTCGTAACCCAAAAGTTGGCAGAAAGGAGAACTTCGAACCAGCGATAACCAAATTTGTTATTTATTTCAAAAGCACATCAGTAACCTTACGGGTCTTTGTACAACCAGAGAATCTAATTTTCGTGTAGTGATTATGAACATTCTTTGCACTTAAGCAAATTTGTTGACTCAGTAATAGGCAAATAGGTATCACCAAGTCCCAGAACACACTAAGAAAATGCGTAATAAGTGTTGTATATTTGgggtgtcccagaaactcgtggcccgtttgtgtggctagtgtgggggccttgtttgggccaatctgacaagtggttactgatttatggcagaggaaaggcaaaaGCAACCATATACttttgaagcaaccacttttcctctgccataaataagcaaccacttatcaaattgactcacagaaggtctcacactctgatctgtgcagctgtgtgaaaatggagacaatcagtacagctcttccacaacagccacacaaatgaggcacaattttttgggacaccctgtaAAATATAGTCCCCCCCCCTCATGTTACTTTTGTATAGTAGTATTATGAAGCCTTATTGTAACTGAAAAAATCTTTTATTTCAGTCCAGTTGCGCACGAGTACATAATTGCCGTTTTACTATTTTGACACATAGATAATAGAAGTATGTACGTTAT

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00069 all species →	Pkinase	Protein kinase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008271 all species →	Active_site	Serine/threonine-protein kinase, active site	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR000719 all species →	Domain	Protein kinase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48013 all species →	DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000165 all species →	Biological Process	MAPK cascade	Interproscan
GO:0004708 all species →	Molecular Function	MAP kinase kinase activity	Interproscan
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for scaffold52.g3.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.