Gene detail

Detailed information of scaffold52.g31.t2 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold52:451255...462583
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold52.g31.t2

ccatacaaacttttcaattcttgttttacagatggcttgtagatcacgcccgtaacttcgaagatgttcagatctcaaataaaactgatgatatggcatgcatttcaatcgctggacctttatcaagggatttactatcaaaagttacatccgaagatgtttcttcaaagtcatttaagttcatgaaatgcagagaaatggacgtggccggtgttcctgttttggctttgagagtttcatacacaggtgagcttggctgggaattttacgtgaagaatgaaggcactgttcaattatatgaggcattaatttctgctggacaggaatttggaattggccatgttggatcgtatgcagtgaattcattacggctggagaaaggattccgattatggggtgctgagatgaatctcgatgttggcccgtacgaagctggtctagatttcttcatcaaactcaacaagggaagcaatttcatcggccgggaagctttattaaaacaaagagcagagcttttgagtaagaaattggtttgcttgacattggatactgataatgttgatgcagaaggaaatgacacaatttggtttggaggaagaatgaatctcgatgttggcccgtacgaagctggtttagatttcttcatcaaactcaacaagggaagcaatttcatcggccgggaagctttattaaaacaaagagcagagcttttgagtaagaaattggtttgcttgacattggatactgataatattgatgcagaaggaaatgatacaatttggtttggaggaagagttgtcggtaacactacctccggttcttatggatatcaagtgggaaaaagcattgcttatgcatacctaccaacaatcttccaggacatcgggacggaggtcgaggttgaacttgttggcaaaaaatacaaagctactgtaacaaaagaaccacttgttcctcttgaggctgccagagaacgactcgcagcaaaaaagaaagcagtagcgtaaggaatcatcatttgaaaagtcaagaagttgacttcattttgaaatgtagaatataatggtaacgcttaacgtgcacttagccgggtttttatacattgttgcttggaatagaattccccttttgccccccccccttgcactggctagcctgtacaaaagacccttacactgtttagagtaaaaccttttgcagatttttaaaagcatcttccattaagttgctggcatgtttgactgtgttttcggtgaaacttgcaatataaaggtaaacaaacaaacagttatagttacgctgccctggttgacactgtcactttcctgcatggcagaatcacgatctatggcacttaaatttcaaacatgcgaagaaacaaggcatggataatgctacatttctaaaatcaatatcaacaactccgaaaaaatgtatcactggtttgcaaatgaaccaaaactttttgcagatttttgaaagcattaatgggatcgaaccgtaccctcgatcatgacgacaatgtgttatggattcgaaccgtattttttgctttgaactttgttgatctttgcctaaactgaacaccaaactgaatattgtatggcctgtcattcaaaaaaaatgttatgacgttataaacacaagaatttccttgctcttccccggtaccattcacctcaatgccactgcaataaatcttgcagtgcagagagttcggaaacaaatttttcgtgataataatttgatctcaagcttttgtttagaaagaattcctcgtgttgtttcttttaaaagcatttttaaagtctgtccattacttccatgagagccagcataggaatctaatgttttgaaaaagcattgcacgattggttaatccatctttcgtttgctttaatggtttaaaagtaacttcgggtatttagttatcactgttcattggcaatatttcgtgtctttattattttccgaattagatacagcatcctcttggtttttaacagttttctggttgtgacgtcatcaaattgctaaatcgtaaaccacaaaagctgcagatttctgcttaccgccaacttagagacgttcagaaactatggttttcttgaagactgtactacttttcctcctttaattaaggattcacaacaagtacctgaagttcctttcaagccattagatgaaacgaaagatgcatctaccaatcgtgcgatgcattttaaaaatttgattcctatgctagcaaagcctcgttcacacgggagtaagaacgcgtcagaaatgctgcagaaaacttcaatttgagattttgtcagtgcctttgaagatgtccaggcgcatatggatcgaatcaaagcgttccgattccatttggaagcgaacacttgttaaaaatgcgtttaaaaggagcttagaaaatggcctctcccaattctaacgcgtttttattattatgtgaacgaaacttaaggcatcatatttacaaaacgtggttttaagattgcaaaacatttagatacccaattagtgtgccaattatttagacttgtttcgttcgttgcatctgccattttaataccatattttatcgtaccacctttaccaaatatagatacccaaatatg

Transcript

scaffold52.g31.t2

CCATACAAACTTTTCAATTCTTGTTTTACAGATGGCTTGTAGATCACGCCCGTAACTTCGAAGATGTTCAGATCTCAAATAAAACTGATGATATGGCATGCATTTCAATCGCTGGACCTTTATCAAGGGATTTACTATCAAAAGTTACATCCGAAGATGTTTCTTCAAAGTCATTTAAGTTCATGAAATGCAGAGAAATGGACGTGGCCGGTGTTCCTGTTTTGGCTTTGAGAGTTTCATACACAGGTGAGCTTGGCTGGGAATTTTACGTGAAGAATGAAGGCACTGTTCAATTATATGAGGCATTAATTTCTGCTGGACAGGAATTTGGAATTGGCCATGTTGGATCGTATGCAGTGAATTCATTACGGCTGGAGAAAGGATTCCGATTATGGGGTGCTGAGATGAATCTCGATGTTGGCCCGTACGAAGCTGGTCTAGATTTCTTCATCAAACTCAACAAGGGAAGCAATTTCATCGGCCGGGAAGCTTTATTAAAACAAAGAGCAGAGCTTTTGAGTAAGAAATTGGTTTGCTTGACATTGGATACTGATAATGTTGATGCAGAAGGAAATGACACAATTTGGTTTGGAGGAAGAATGAATCTCGATGTTGGCCCGTACGAAGCTGGTTTAGATTTCTTCATCAAACTCAACAAGGGAAGCAATTTCATCGGCCGGGAAGCTTTATTAAAACAAAGAGCAGAGCTTTTGAGTAAGAAATTGGTTTGCTTGACATTGGATACTGATAATATTGATGCAGAAGGAAATGATACAATTTGGTTTGGAGGAAGAGTTGTCGGTAACACTACCTCCGGTTCTTATGGATATCAAGTGGGAAAAAGCATTGCTTATGCATACCTACCAACAATCTTCCAGGACATCGGGACGGAGGTCGAGGTTGAACTTGTTGGCAAAAAATACAAAGCTACTGTAACAAAAGAACCACTTGTTCCTCTTGAGGCTGCCAGAGAACGACTCGCAGCAAAAAAGAAAGCAGTAGCGTAAGGAATCATCATTTGAAAAGTCAAGAAGTTGACTTCATTTTGAAATGTAGAATATAATGGTAACGCTTAACGTGCACTTAGCCGGGTTTTTATACATTGTTGCTTGGAATAGAATTCCCCTTTTGCCCCCCCCCCTTGCACTGGCTAGCCTGTACAAAAGACCCTTACACTGTTTAGAGTAAAACCTTTTGCAGATTTTTAAAAGCATCTTCCATTAAGTTGCTGGCATGTTTGACTGTGTTTTCGGTGAAACTTGCAATATAAAGGTAAACAAACAAACAGTTATAGTTACGCTGCCCTGGTTGACACTGTCACTTTCCTGCATGGCAGAATCACGATCTATGGCACTTAAATTTCAAACATGCGAAGAAACAAGGCATGGATAATGCTACATTTCTAAAATCAATATCAACAACTCCGAAAAAATGTATCACTGGTTTGCAAATGAACCAAAACTTTTTGCAGATTTTTGAAAGCATTAATGGGATCGAACCGTACCCTCGATCATGACGACAATGTGTTATGGATTCGAACCGTATTTTTTGCTTTGAACTTTGTTGATCTTTGCCTAAACTGAACACCAAACTGAATATTGTATGGCCTGTCATTCAAAAAAAATGTTATGACGTTATAAACACAAGAATTTCCTTGCTCTTCCCCGGTACCATTCACCTCAATGCCACTGCAATAAATCTTGCAGTGCAGAGAGTTCGGAAACAAATTTTTCGTGATAATAATTTGATCTCAAGCTTTTGTTTAGAAAGAATTCCTCGTGTTGTTTCTTTTAAAAGCATTTTTAAAGTCTGTCCATTACTTCCATGAGAGCcagcataggaatctaatgttttgaaaaagcattgcacgattggttaatccatctttcgtttgctttaatggtttaaaagtaacttcgggtatttagttatcactgttcattggcaatatttcgtgtctttattattttccgaattagatacagcatcctcttggtttttaacagttttctggttgtgacgtcatcaaattgctaaatcgtaaaccacaaaagctgcagatttctgcttaccgccaacttagagacgttcagaaactatggttttcttgaagactgtactacttttcctcctttaattaaggattcacaacaagtacctgaagttcctttcaagccattagatgaaacgaaagatgcatctaccaatcgtgcgatgcattttaaaaatttgattcctatgctAGCAAAGCCTCGTTCACACGGGAGTAAGAACGCGTCAGAAATGCTGCAGAAAACTTCAATTTGAGATTTTGTCAGTGCCTTTGAAGATGTCCAGGCGCATATGGATCGAATCAAAGCGTTCCGATTCCATTTGGAAGCGAACACTTGTTAAAAATGCGTTTAAAAGGAGCTTAGAAAATGGCCTCTCCCAATTCTAACGCGTTTTTATTATTATGTGAACGAAACTTAAGGCATCATATTTACAAAACGTGGTTTTAAGATTGCAAAACATTTAGATACCCAATTAGTGTGCCAATTATTTAGACTTGTTTCGTTCGTTGCATCTGCCATTTTAATACCATATTTTATCGTACCACCTTTACCAAATATAGATACCCAAATATG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01571 all species →	GCV_T	Aminomethyltransferase folate-binding domain	Domain	Interproscan
PF08669 all species →	GCV_T_C	Glycine cleavage T-protein C-terminal barrel domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029043 all species →	Homologous_superfamily	Glycine cleavage T-protein/YgfZ, C-terminal	Interproscan
IPR028896 all species →	Family	Aminomethyltransferase-like	Interproscan
IPR027266 all species →	Homologous_superfamily	GTP-binding protein TrmE/Aminomethyltransferase GcvT, domain 1	Interproscan
IPR006222 all species →	Domain	Aminomethyltransferase, folate-binding domain	Interproscan
IPR013977 all species →	Domain	Glycine cleavage T-protein, C-terminal barrel domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43757 all species →	AMINOMETHYLTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for scaffold52.g31.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.