Gene detail

Detailed information of scaffold52.g36.t2 in Morbakka virulenta

Genomic Location: scaffold52:2162897...2241184
NR annotation: XP_020626064.1, tetratricopeptide repeat protein 30A-like [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

scaffold52.g36.t2

atgccgatgtcggagcatatacctgtattatggttagatctaatggtttggctgctatttctactattaatattcgatctgataccgggttgtattgaaaggtgccctttgtgaggtgtttatttacaatcacagctactcctctttgatgatctttaccaccggaatagatcactaattcgcctgaattggctttaaaatgaccatttcctggccacctggactcgcatagtccaaggatattcgtagtactgtcttccatttcatgtaatacttgtgccaaagctccagtctgatatagtgatcgaacgttccacgttccgattctcactttcttcctcatattaaatctgctacttgggatcctactatatTCAAGAGCAGCACTCTCTCTACTGGGCTATTGTTACTTTCAAATGCAAGACTTTGCAAATGCAGCAGAATGCTATGATCAGCTTACAAAGCTTTTCCCTGAGGTTGAAGAATACAAATTGTATCTATGCCAGGCTCACTGTAAAGCTTTTAACGCTCAGGATGCAATGAAAGTTTCTTACCAGATTGAGAGTCAAGCTATGCAGAGTAAAGTTGTTAAACTTCAGGCAGCAATCCGGTACGGTGAAGATGATATACCAGGAGCAAAGAGTCTTGTTGAGCAGCTACCCTCAGATGACCCTGATACGGAAGTTAATCAAGGATGCCTTCTTTTTAAGGAAGGGAGATTTCAAGATGCCTGTCAGAAGTTTACGACGGCAATGAATATTCTTGGATATCAGGCTGATTTATCTTACAACATTGCGTTGTGTCATTATATGATGAAGCAATATGTTCCAGCATTAAAGCAAATTGCGGACATAATAGAGAAGGGAATACGGGAACACCCAGAGCTGAGTGTTGGTATGACTACAGAAGGTATTGAAGTAAGAAGCGTCGGAAATACTCGGATTCTGCACGAGACAGCATTGATTGAAGCTTTCAATTTGAAGGCTGCCATTGAATATCAGCTGAAAAATTTTGATGCTGCACAGGAAGCCCTAACGGACATGCCACCAAGAGCCGAGGAGGAGCTTGATCCTGTAACCTTGCATAATCAGGCTTTGATGAATATGGAAGCCAACCCAACAGAGGGGTTTGAGAAGCTCCAGTTTCTTTTGCAGCAGAATCCTTTTCCACCTGAGACTTTTGGAAATCTGCTACTTTTGTATTGTAAGTACCAGTATTATGACCTTGCTGCTGATGTACTTGCTGAAAACACACACTTAACATACAAGTATTTGACACCGTATCTCTTTGACTTTTTGGATGCTATAATAACGCAGCAAACGTCCCCTGAAGAAGCCTTCCGAAAATTTGATGATATGGCTGTAAAACACACAGAAACTTTAAGAAAATTGACAAAGCAGGTTCAAGAGTCCCGTGTTAACCACGATGATGAATCTGTAAAAAAAGCAGTAAACGAGTACGATGAAGCTTTGGAAAGATATATTCCTGTTTTGATGGCACAAGCAAAAATTTACTGGGACAGAGAGAACTACACTGCTGTTGAAAAGATTTTTAGAAAATCAGTGGAATTTTGCAACGAACACGAAACCTGGAAACTAAATGTTGCCCATGTATTATTCATGCAGGAAAACAAGTACAAAGAAGCAATCGGATTTTATGAACCCATCGTTAAGAAGCACTATGATAATATTTTAACAGTGAGTGCCATAGTGCTGGCCAATTTATGTGTATCTTATATCATGACAAGTGCCAATGAAGAGGCGGAGGAACTCATGAGAAAAATAGAAAAGGAGGAAGAACAAGTTGCGTATGAAGACCCTGATAAGAAGATATTTCATTTGTGTATTGTCAATTTAGTTATTGGTACTCTGTATTGTGCTAAAGGCAATTATGAATTCGGAGTATCAAGAATCATAAAAAGTCTTGAACCTTATCAAAAGAAGCTTGGAACTGATACCTGGTTTTATGCAAAAAGATGTTTCCTGTCACTGATAGAAAATATGGCAAAACAAATGATTATGCTTAGAGATTCGGTTATCGCGGAAACCCTTCAATTTTTTGACCATTCAGAAGTGTACGGCCGCAACGTGCAAACAGTGGTGGAGCAACCGTTGGAGCAAGAGCCCCTTCATGCTGGAAAAAATACAGTAACTTACGAAGCAAGGCTGCTAAAAAGTCTCTTTCTAAAAGTGGTTTGAGTTCCCTTGAAGGTATCAAATTGTAGGGTTGGAAGCTGTTGGTAGCGCAGTCAACGATTCGTTTATTATCAAGATGACTTACACTTTTTCCTTTAATAAGGGTGCGACTTGTCTGTTACAACCGTTATGCGCATCCATGCTTAACTGAAGGACGATGTAGCTGATTTGTTGTACACAGCTTGTAATAATACTGTTACTTTCGAAAGGATCTTACTTTTAGGGCACCCATTTTCTTTGTTATTCCATTTATTTTCACAACAAATGTAAATATTGATT

Protein

Uniprot

Uniprot term	Description
A4IHR1	Intraflagellar transport protein 70A OS=Xenopus tropicalis OX=8364 GN=ift70a PE=2 SV=1
Q6INU8	Intraflagellar transport protein 70A OS=Xenopus laevis OX=8355 GN=ift70a PE=2 SV=1
A7YE96	Intraflagellar transport protein 70A OS=Danio rerio OX=7955 GN=ift70a PE=2 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
--	--	--	--	--

InterPro

InterPro term	Type	Description	Source
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR039941	Family	Tetratricopeptide repeat protein 30	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR20931	UNCHARACTERIZED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005879	Cellular Component	axonemal microtubule	Interproscan
GO:0030992	Cellular Component	intraciliary transport particle B	Interproscan
GO:0042073	Biological Process	intraciliary transport	Interproscan
GO:0120170	Molecular Function	intraciliary transport particle B binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K19683	TTC30, DYF1; tetratricopeptide repeat protein 30	-	Cilium and associated proteins	ko03037	deepkoala