Gene detail

Detailed information of scaffold520.g4.t2 in Morbakka virulenta

Genomic Location: scaffold520:57951...101025
NR annotation: XP_022779494.1, E3 ubiquitin-protein ligase TRAF7-like [Stylophora pistillata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

scaffold520.g4.t2

AGCGCACCAATCTCTCTTAATGTAAGGTGCACGAAATGTATGTAACAACAAATTTTTTAAAATCGGATTGACCAGGGTTACAGTGCGTTCGAGGTCATGTCAGGTGGATAGAATTTCGCTTTTTAAAACATGGTGACTTAGACTTACGAAAGCGAACAACCACACAATTGAAAGTAGCGAAGACGGTCAGCAGGACTTTGAAGTAAGGATACAGGATGACAAATGGTGGACTACGCCTTGGGTCTCATTAGTTGCGTTGAATTCTATTGACTTCAGGTTGACTTTTCACTCCATAGTCAGGGCTAATTATTATGAATGTTGATATCCCAACAAAATTTGTCGCAGACCCATCAGCTTCTCTCAAATGCCCTTTGTGTGAGGGACTATTCAGAGATCCTGTTATATCAACAAGGTGTGGGCACACATTCTGCAAGAGTTGCGTTACCGAGGGTCTTGAAAGTTCTGTAAGAGCGGCATTACCATGCCCAACAGATCAAATAGCCTTCACTGCATCTGACCTTGTGAGTAACAGGGCTGTTTTATCGCAGCTTGAAGATCTTTTAATTTATTGTCGTCATGGATTGTTGAGGTACGATTCTGAGGAAGATTTTATTGTTGATCCAAGTGGATGTCCAGACAAAATCCATCTTGGACGACGACATGAACATGAGAACTTGTGTTCATTTGCACTCGTTCCATGTCCGAACAGCTCCAACCATTGTGGAAAATTCAGAAAAAAGGACATAGACGATCATCTGAAAATTTGTCGACGTGTAAAATGCCCCTTTGAGCATAAAGGATGCAATTTTGTTGGTACTGCAGAGCTGCAAAGAGCGCATCTTGCAAGTTGTGTGTTCTCAGGGAACAATGTTGACTGGGAATTCTTCAATAAGCTTGAGAGTGATGAGGTTGCAAATGGTACCAAGAACCAGTACCTCATAAAAGCAGTTAAAAATCTAAATGAGAGACTAACAAGCCTGGAAGATGGGAAGGATGTCATACTTGAGCAGCTTGATAAATGTGCAGGAGGAATTGCAGCATTGTCAAACCAGCTTGAAAAGTTGACACATGTTATTGAGCAAGTTAGAATCACACAAGCAGCTTGTGTTCCAAAAAGGTCTGTTTCACAGTCTGCCACAGACATAAATGCAGGTACCGATTACAATGTACTTAAGTCTTTGTCAGCATCAGGACTTAACTCATTCAAGAGTAGAACAAGATCTTCATCTGGTGAAAGTTCACAAGTTACATCCAGTCCTGGACAAAAAAATAAATGCTGGAAAATGCCATTTACATTTAAATGTATTGGAACCTTCAGAGGACATTCAGGAACAACATGGTCATTGACAGCAGAGGGAAATCATCTTTTTACTGCAGGTGGTGACCGAGTTATAAAAGTATGGGACATTGCAGATATAAAGAATTCAAAAGGATGCATCCAGACATTGAAAGGCCATAAAGATGATATTCATGCACTTTGTACTGGAGGAGGTCTTTTATACAGTGCTGGGACAGATCGATCTTTAAGGGTCTGGAGTTTGAACCAGTTTAAATGCCTAAGAGTGGTGGAGGATGCAGACGACAATATAATTTGTGCACTTATATACACTGGTAAATATGTCATAAGCTCATCACACTCGACCATTAGGGTTTGGCAGCTTAGAACACTTGATCTCGTTCATACAATTGATGATTTAAAGCATTGGGTACGGGCCTTGGCACTTGATGGTAAAAAGGAAAAATTATACAGTGGCTCACATAATACAGTTCATATATGGGATGTTGTAAATAACTTCGTATTGAGGGGTAAAATTGACCATTTCCACGGGTCAGTGTATTCCCTTGCTGTAACGAAACAGTATCTTATTATGGGTACGTATAATCAAAATACACATTTGTATGACATCAATACATTTCAGCATGTACATGCATTAACAGGACATTTAGGTACAATTACTGGGTTGACTTGTTCACCGTCAGGAAACTTCCTTTTTACATCCTCGTGTGATAGCACAGTACAGCTTTGGGATTTGATCAAGTTACTACCAATCCAAATTTTAAGTAGACATGAAGCAAGTGTAAACTGTTTGACACTGAAAGGAGATTTACTGTTTACCGGATCTGAAGACAGGGAAATCAAAGTATTCATGTACCAAAAGCTTTTGTTATTTATGGATCATTTGTGAACAGATATATTCCTTTCTTCGTGTGACCTGTGAGTTGTTTAATCCCCCTAAGAAGAATTGACTCAGTGAACTACATCAAAAATATTCACACGGAATTCGGGTAATGTTATGAGAAACAGGTAAAGAATTAACGAGGACATCGTTTCTGGACTTCTGACAGAGCTTTGGTTTTTTAAGTAAGAAAACATCATATTTGCGATTGGGTAACCGTCATGTAGAGATGGATAGCAGATGTCTTCGTCATTTCCATTCATCAAAATTTCTCTTTTTCTGCGATTTTTTTCCTTCAAAAGAACTGTTTTTTGTAATTAAAGAGAAAGATGGAGACATGCTTTGGATGCCTGCAGTGGGGTCCTGCGCCAAAAATTAATCTGGATAGCTCCTTTGCTCCTTTGATGCAGGAAAAAGGAGACTAAGTTGGAGAAGAAAAGAAAACATAGTCTGGTTGACAAGAGTCTCGGCGTCAACAACCAGCTGTCGAACATTTAAAGAAAACTAGAGTTCTTCATTTTGTATACTTTTAGTGGAGCGGTTTTTGAAATTACTATGAAGTTCTTTCTTCATTTCTCAAAGAAACATTTTGATTTTGTAAAATATTTTGGTCTATATTAAGGATATCAAATGGAATTCTTTTTTTTGTCAGATATTGGCATTTAACTATATTTATTTTTGCTTTAAATCGTAGTGTTTCAGAAAGTGATAAATTAAGCTTCAGGTAACATTTTTTATAAGGTATCTTTTGACAATTTTTTAACATTCCTCGTTGATTAAAACGGATTTTTTACGAATGGACACGTGATGTAAAGCAACCTACCTTGGAAAACGTGTCACGACTTATTCAAATCGTGTTATGAATAGCCATTTAGTTGGAGCTTCCGGTCGACACATATCTGCAGTGTATATAAATCTTCGATTTTTCATTTTTTTGTCTTAATGGTAGGATTCTTATTATTTTTCTATTCTCAGCTGGAGCTGAAATATTGCTCACATATCGGGTCTAATTGTCATGGTTGTATACCATTTATTAGAGCAGTCGGTGTTCCATTGCCTAGGTGACATATTTTGAAAGCTTGATCAGTACCTCATGGTGACAAAACCTAATTAGTACCTTAACGGCCATGTTAAGCGGAGCTGGCCGCATGCACTTTGCTAGTAACCGTTAAGTGGTTGGTATTTCTTTTTTCACTATCCCCCTCCCCCCCCGGGCAAATGCCGTATTACCTTGTTCTGTTGTCAGTTATTAGTATTCTGTAAATTACACACCATGTATTTTCCCATAACTTATGGGTATACTGTTGTGAGATTTTGCGGATTGTTGGTAAGATACTAAGGTTGCGTATTTGAATATATTTTTCCAGGTTTTAAAGGACTGAAGTTGTATGTATACAAGTTGTTGTTTTACGATGATCCGTGTAGCCTTTGACAGGCTAAAACTAATGTAAAAGAAATAAATATATTATAC

Protein

Uniprot

Gene family

Uniprot term	Description
Q8CBE3	WD repeat-containing protein 37 OS=Mus musculus OX=10090 GN=Wdr37 PE=1 SV=1
Q9Y2I8	WD repeat-containing protein 37 OS=Homo sapiens OX=9606 GN=WDR37 PE=1 SV=2
A4IIX9	WD repeat-containing protein 37 OS=Xenopus tropicalis OX=8364 GN=wdr37 PE=2 SV=1

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|Beta-prp
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|CDC20
Ubiquitin Family	E3\|E3 activity RING\|RING
Ubiquitin Family	E3\|E3 activity RING\|U-box
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|DWD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02176	zf-TRAF	TRAF-type zinc finger	Family	Interproscan
PF13923	zf-C3HC4_2	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan
PF00400	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017907	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR019775	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR001293	Domain	Zinc finger, TRAF-type	Interproscan
IPR001680	Repeat	WD40 repeat	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR020472	Repeat	G-protein beta WD-40 repeat	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22847	WD40 REPEAT PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K10646	TRAF7, RFWD1; E3 ubiquitin-protein ligase TRAF7	EC:2.3.2.27	Ubiquitin system	ko04121	deepkoala