Gene detail

Detailed information of scaffold524.g4.t5 in Morbakka virulenta

Genomic Location: scaffold524:283431...295395
NR annotation: CAB4015423.1, splicing factor U2AF 65 kDa subunit-like [Paramuricea clavata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

scaffold524.g4.t5

CACTAATACTTTTCATTTTGCTTTTCCCCCAATTTTGTCCGTAGCTTAGGGGGGCCTAAAGTCACTCGCTACTGTTTGACTGGCTGCAGGCAAGTCTGAATTGGTGCCTTCTGTACTGTCTGGTCATGTCACTGAAAAGACATCTTCAAAAATTCATATTGGAACATGATTTTATTAATGTGGTGTATAGTGAatttatttatttgttgttttttatttatAAAAGAACgttttgttatgcgtatggtttgttgttattgttgttgtgggtagtgtgattgcgttcatgtgactgtcgtgtgtgtgtgtgtgtgtgtgtgtatgagtgttgtctttgtgGATTTTTTCCATGTCTCTGTGAGTATATTTGCTTTTTAGGTACTGGATGTTATTATATAGCATGTAAGTTCTATAACTTTAATTATACTGAAACCTAAATCTGTTAGGTAACAATCTTGTTGTAAAAAGATTATATCCTTTGCTAGGATAGTTGTAAGCAAAACATGTGAGGTATTTCGCTAATTTATTGTGGGAAATATTTTTACATCATTATAAGATAGACAGCTACTTGTCTATTTTTTTATCCAACATGACACATTTTATTTAGTTGTTTTCAATAATGTGGTTATAAGAAAATCACACTTTATTTTTCTATAATTTTTGGCACAAAAATTATGTAATAAACCAAGACACAGTGGATTGAACGACGTTTGGAAATCCATTTCTCACGCTGCTCAGTACTGCTCTATGTTATTTGTGCTAAAATGCGATCATAAGTATATTGGTAACCTAATAATTATTTAAAGAGAGCATATATTTTGGAGAAATCCTTAATTTATCATTGTCGCGTTATCTTTTTTTTCTATTTTTAGGTGAAAGAACTTTTGTCATCGTTTGGTGAGTTAAGGGCTTTTAACTTGGTGAAGGACAGTGCAACTGGTTTATCCAAGGGATACGCGTTTTGTGAATACGTGGACTACAATTTAACAGACGTCAACgttttgttatgcgtatgGTGAAAGAACTTTTGTCATCGTTTGGTGAGTTAAGGGCTTTTAACTTGGTGAAGGACAGTGCAACTGGTTTATCCAAGGGATACGCGTTTTGTGAATACGTGGACTACAATTTAACAGACGTCGCCATTGCTGGGATGAATGGTATGCAGCTTGGTGACAAAAAACTAATAGTTCAACGAGCAAGTGTTGGTGCAAAGGGAGGCACAGGCGAGGGGGGTGAGCTTAATCCAGTCCAATTACAGATACCGGGTCTAACAGACATCAAGCTAACCTCGACATCGGAAGAAGCTACAACAGTGTTATGCCTGATGAATATGATAACAGAAGAAGATCTTGGGGACGACGAAGAATATGATGAAATATACGATGACATTCGCGACGAATGTGCCAAATATGGTACTATAAGAAGCATGGAAATTCCACGACCAAACCCAGACTACTACGTACCAGGGGTTGGAAAGATTTTCATTGAATACACGCAACCAAGAGAATCACAGGCAGCACAAGATGCCCTTGCTGGAAGAAAATTCGCAAATCGTGTTGTTGTGACGTCATTTTATGATCCAGAAAGATATTACAGCCGCGTATTTGCTTAATTGTACATTGGCATGTGGTTCTTAGAGATTAATGAACCCGACGTTTAGCCGGATGTTAAGCCACAGGTGAAGGTGTTGCCAACAGTGAAATTACTTGGAAAATGAAGTCGCAACTGACATGGGACACCTCAGCTTAATAAGACCACTTTCCTTTAAACTGCCGTCTTCTCTGGCGTGTAATTACAGTTGTTCACTTGGGTCCAGTTGAATGCGGCCGTCAACTTCATTTTGCCAACTACTTAACAGTGATTGCCCATTTGACTGAAAGAAGACTGCCCAATAAAGGCGTTTTCTTATTTTAAACTGTATTATACATAGTATCACAGATTACACGAAGTTTGAATAATTCTTATGGCTTTTGTATAGAGAACAGTTTCCAGCAGCCCATAGGTAGAAAGAGGAGACCCATCCGAAAGGAAGGTGCAGCAAAAGAAGGAAGTTTCTCCTGTTGACTTAATCGTCGAATATTTTGAAGCACTTCAGGTGTATTGGGCTCGTTTATTATGTTTAATAGAACAGAAAACAAGGA

Protein

Uniprot

Uniprot term	Description
Q24562	Splicing factor U2AF 50 kDa subunit OS=Drosophila melanogaster OX=7227 GN=U2af50 PE=1 SV=1
P26368	Splicing factor U2AF 65 kDa subunit OS=Homo sapiens OX=9606 GN=U2AF2 PE=1 SV=4
P26369	Splicing factor U2AF 65 kDa subunit OS=Mus musculus OX=10090 GN=U2af2 PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23139	RNA-BINDING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0000243	Cellular Component	commitment complex	Interproscan
GO:0008187	Molecular Function	poly-pyrimidine tract binding	Interproscan
GO:0016607	Cellular Component	nuclear speck	Interproscan
GO:0030628	Molecular Function	pre-mRNA 3'-splice site binding	Interproscan
GO:0071004	Cellular Component	U2-type prespliceosome	Interproscan
GO:0089701	Cellular Component	U2AF complex	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K12837	U2AF2; splicing factor U2AF 65 kDa subunit	-	Spliceosome	ko03041	deepkoala