Gene detail

Detailed information of scaffold53.g38.t3 in Morbakka virulenta

Genomic Location: scaffold53:1465653...1519149
NR annotation: XP_047126102.1, vacuolar protein-sorting-associated protein 36 isoform X2 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

scaffold53.g38.t3

AGTACCTTTTTTTGAATTTGTTTATTATTCAGCACTGACAAAATGGATGCCCGAAGAATGGGTTTGCACTAGTATATTAGTCGTGTAGAATTAAAAGTTGCAATAAGATATAGTTTGATGGACAGGTTTAGCTGGGTAGCAGAAAACAAGGGGAATGAAGGAGGCACCATTGCCACACAAGATGGAGTCTGTTTATACGACGGAGAACAGAAGcttccctcaccatttctttctcaatgaaaatggctggtccagatactgtttctacctctccaagattttctctatcccaagaaaactctgtgttcaacaatctctcataatagcacttccaggcattcttcttttcaagttcacttgttgcaagttctccatcatcattcctgatacacttttctccaatgatatcctgattagtcttgatcatctgcttagctatcttgaatacttaattcttctggtcatctctacacattatgtctggaaaccttctctcggcatccatctttgctttgtagattgcttgcctagctactctcttggcctccagatacctttctttgttaactaacccctttttccattgactccacagccttctcttctctttcacataattttcaacagaagtattccaccaccatgtcactctatgacgtggaggcccttttgtccagccacagacttggtctgtggctttcaaaagtgtatccttgatcttctcccattgctcttctacacttcataggtcttttcctggactagctcccacaattccattcacttgatcttcaaaggcctgctttacttgtccatcatttagtctccacacctttctccttgggatatactttcttttcactttatgtactttcttaatcctgaagtcacaaattactggcttatgctgggtcacaaattcttcaccgggtatcacttttacatcttgcaaatacttcctgtcttttgtctttaccaaaatgtagtccacttgagtcatagctgtcccagactcataggttaccagatggctatcccttttcttaaaaatagtattcgccaccaacatgtccatggcaagtccaaactctagaattctttcaccctccttatttcggtcaccatatccatttcctccatggactccctcaaacccagatgctgttcttccaacatggccatttagatcacctgcaatagcaacaatttctttctctgccagcttaccagtgactgcaatgagactgtcatagaattcatccttgacttcttcacttaagccacattgtggtgcatacactgatattgctgtgaagattgtctcacctatcatcagtttaatcagcataattcgatcatttatgcgtttgacatcaatcaccttgtctatccatttctctgcaacaaagatacctacaccacctgtgccttttccattaccaatccaaaacagcttgtatgttgcctttttcccttctatcattcttacagatttccctctccatcgtgtttcttggatgcagcacaaatcaatgtgtcttcgctcaagaaactctgctacttcaccagatctacctctcaaacttcccacattcagactacagagtctgaagcttgtcatcacttccttcggttgatgtagtagcttgataacggtctgattttgcctacatcgagcaaaggtcctaccgtgcgcgacaccttcacttaaattagttccagtctcgtttacgcagttataccggatatctttggatgtcatttcatgTCCACATTTGAAGTTGGTAAAGTTGAAGTAACAAAGACTCTTTTACTTTGGGATGACCAGACTCAAGAGAATAGAAAAATTTACTTACCACTGAGCTGGATTACAAAACTTGAAAAGGAAGGTGGGGGCCTCTTTAAAAGCCCAAAGGTATTGGCTCATCTACAAAAACCAGCGCCTGGGAAAGAGGCTGGACCTTGTTTTAATAGTCAATGGAATTACATAAAGCTGTCTTTTAGGTCTGGGGGACAGAACACAATCTATGATGCATTAAACAGTGCTCTGGCGACAAAAGCATGGCTTACTCAAGCAACTTCAGATGAAAAAGTCAAACCAGCAGCTACAAAGGTTGCTACAAGACATGCAGGTATTGGAGGTATAGAAAGAAAAATGGAAGAGAAGTACAGAGCGAGTGACCACTCAATAACACAGGCATTTAAAGATCTCGATGCATTAATGATAAAACCCATTGCTTTACGGCGTTACGGCTACTTAAGTTAAATTAATTGGGACCGACTCATTTTCTCTCCACTACTACACTACGTTGCTGAATAGAATTGTAATTAGAAG

Protein

Uniprot

Gene family

Uniprot term	Description
Q9VU87	Vacuolar protein-sorting-associated protein 36 OS=Drosophila melanogaster OX=7227 GN=Vps36 PE=2 SV=2

Gene family	Subfamily
Ubiquitin Family	UBD\|PH\|GLUE

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
--	--	--	--	--

InterPro

InterPro term	Type	Description	Source
IPR037855	Family	Vacuolar protein sorting protein 36	Interproscan
IPR011993	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR021648	Domain	Vacuolar protein sorting protein 36, GLUE domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13128	VACUOLAR PROTEIN-SORTING-ASSOCIATED PROTEIN 36	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000814	Cellular Component	ESCRT II complex	Interproscan
GO:0031902	Cellular Component	late endosome membrane	Interproscan
GO:0032509	Biological Process	endosome transport via multivesicular body sorting pathway	Interproscan
GO:0043130	Molecular Function	ubiquitin binding	Interproscan
GO:0043328	Biological Process	protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway	Interproscan
GO:0032266	Molecular Function	phosphatidylinositol-3-phosphate binding	Interproscan