Detailed information of scaffold54.g2.t1 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold54:33668...45564
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Gene family
Family typeMembership / link
Transcription factor familyHTH · all TF in this species
Ubiquitin familyE3|E3 activity RING|PHD · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF05225
all species →		HTH_psqhelix-turn-helix, Psq domainDomainInterproscan
PF00628
all species →		PHDPHD-fingerDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR007889
all species →		DomainDNA binding HTH domain, Psq-typeInterproscan
IPR019787
all species →		DomainZinc finger, PHD-fingerInterproscan
IPR006600
all species →		DomainHTH CenpB-type DNA-binding domainInterproscan
IPR019786
all species →		Conserved_siteZinc finger, PHD-type, conserved siteInterproscan
IPR011011
all species →		Homologous_superfamilyZinc finger, FYVE/PHD-typeInterproscan
IPR013083
all species →		Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR009057
all species →		Homologous_superfamilyHomeobox-like domain superfamilyInterproscan
IPR001965
all species →		DomainZinc finger, PHD-typeInterproscan

 PANTHER
No PANTHER signature was detected for scaffold54.g2.t1. This gene does have a gene model — the search simply returned no hit.
 Gene Ontology
GO termCategoryDescriptionSource
GO:0003677
all species →		Molecular FunctionDNA bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for scaffold54.g2.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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