Gene detail

Detailed information of scaffold54.g22.t2 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold54:388350...404964
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

Gene family

Family type	Membership / link
Ubiquitin family	DUB\|UCH\|UCH · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01088 all species →	Peptidase_C12	Ubiquitin carboxyl-terminal hydrolase, family 1	Domain	Interproscan
PF18031 all species →	UCH_C	Ubiquitin carboxyl-terminal hydrolases	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001578 all species →	Domain	Peptidase C12, ubiquitin carboxyl-terminal hydrolase	Interproscan
IPR036959 all species →	Homologous_superfamily	Peptidase C12, ubiquitin carboxyl-terminal hydrolase superfamily	Interproscan
IPR017390 all species →	Family	Ubiquitinyl hydrolase, UCH37 type	Interproscan
IPR041507 all species →	Domain	Peptidase C12, C-terminal domain	Interproscan
IPR038765 all species →	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10589 all species →	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004843 all species →	Molecular Function	cysteine-type deubiquitinase activity	Interproscan
GO:0006511 all species →	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0016579 all species →	Biological Process	protein deubiquitination	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K05610	UCHL5, UCH37; ubiquitin carboxyl-terminal hydrolase L5	EC:3.4.19.12	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.