Gene detail

Detailed information of scaffold54.g36.t1 in Morbakka virulenta

Genomic Location: scaffold54:1424582...1444809
NR annotation: XP_036936972.1, eukaryotic translation initiation factor 4H isoform X2 [Acanthopagrus latus]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

scaffold54.g36.t1

AAACCACTGACCAACCAAGAAGAAAAGATCCCTGGGCGCTAAAGTTACTTTCACATGTTTGTTACGTTCAAAATGCAAAATGGCGGCACCATCAGGCGGTGAATGGGGCCAGGACGGGAAGTTCTATGACAATTTTGAGACACCTACGGGATACAATGATTTTAATCAGTATGGTGGAAATAGAAGAAAaggtggtggtggaggaggaggaggtggaAATTGGGGTGGAAATAACAGAGGATATAACCAGAGAGGGGGTGGTGGAGGATATGAAGACAAAATGTTAAAGATACCTACAGAACCCCCATATACTGCATTTGTGGGAAACTTGCCTTATGATTGTGTTCAAGGAGATATTGATAAAATATTTCAGGAATTAAAGATGAAAAGTGTTCGTCTAGTTCGAGACAAAGAGACTGACAAGTTTAAAGGGTTTTGCTATGTAGAATTTGAAGATGCTGATTCACTAAAAGAAGCACTGGGTTACGATGGTGCGTTATATGAAATGCGGACTTTGAAAGTTGATGTTGCTGAAGGACGAAAAGACAAAAACGATGGGAGAGGAAGGGGTGGAAAAGGCGGGTTCAGAGGTGGTGGAGGAGGCGGAGGGGATTTTAATCAGTTCAATAGAAATGATGGATACAGGAATGAAGGGGGCTACAGAGGTGGCCAGAGAGGCAGAGGATATGGCGGAAATTTCTCAAGGGGAGGAGGTGGTTCTGGCAGAGGTGGTGGACCGGGTGGTGGCGGTGGTGGCGGTGGTGGCGGTGGTGGACCGGGTGGTGGTTGGTCTGGTTCTAGAAGTGGATTTGAAAGAAATGATTTTGCTGGTTTCGATTTCAGAGAGCCTGACCCCGGTGAACTAGCATCTCGTCCGAGGTTAAAACTCAAGCCACGGTCAGTGACAGACCCTGTCAATCAGTTGGCGGACAGTATGCAACAATCTTCCATCTTCGGGGGTGCAAAGCCGCGGGACGAGAGAATGTACGAGGATAAAGTTTATAAAGAAAAGATGAAAGAAAAATTCGGTTCATCAGAAAATGAAGAGCCTTGCGAGGAATAGTTTAAGCCATATTAATTCGACCTTCCTTTTTGGATTCAGCTGTACCCCCGAAACGGTTGTGCGTAGTCAGCGTTATTGTAAAGCAAAGATTAGGAGCTTTATCTTCCATCAACACTTAAGATCGATGCCTTGCGTACTTCTGTACTGGGAAGTGGCAGCAGCAAAAAGCTTCGTAACTATTCTTGTCGTCCTCTAGACGGTCTCTTCCTGGAGAAAACATTGAAGCCCTAACACGGCATGATGTTGTTCCGTGCAATATGAATATCTTAATACAACTGTGTTCAGGATATTAGATTTGTTATTTTATGAATATAAAATAGGAAAGTACGATTCCGACATGGTGCAATCTTGTTAGGTGCGTTGGTGTCACCTAAGTATTAATAAGATTCATTAATTTATTTGGATGTTTATAACATTGCTGTCTTGTTGAACCTCAGGAAAGACTTGGTTGTAAAGGTAGAGAAATCACTAGAACCTATACAACGAAAAATCAGGCAAAATTGTTTTTGAAGTAGGATTTTAAGGTTTTGCAAGTTGCAGAATAGCACGAGTAGTTTTATTCGTCTTTTCAGTTGCATATTTTGGCCAAAAATTGAGCTTTTTTGAAGGAAAATAACTACTCTGTAGGCAGTAAAGTAAATATGCGACTAATTGTTTTATTCCTTTTTGTCCGTTGATTTCATGTCCAAAATTATATGGTTAGCCAAATTACTATGGTAACACTTTGACTTTCTCCTCCCCTTATCTTACTATTTGGTACTTAAAGATTTTGCAGTGATTTACCTTCCTCCCTCAGGCCGTACATACTTTTTTCTTTTTGTTTTCTCCATTTGTGCTTGCTGCTTCGATCGAAATTAGAACCACTTTTTACATAGATTTTAGTTTTCGGATTGTGTTTGGATGGCTAGCATCGTAGCTACGTAAGCTTTGAATTATATGATTTAATATTCGCCAAGGAGTGTCGCAACTTTCCAGCCCAAAATCTGTTTTAACTGTACTCTTTTGGCACACTGATAAAATTGCATTGAGCCATGTAATATTTGCCTAAATGAAACTAGAAAGGCTTA

Protein

Uniprot

Uniprot term	Description
Q9WUK2	Eukaryotic translation initiation factor 4H OS=Mus musculus OX=10090 GN=Eif4h PE=1 SV=3
Q15056	Eukaryotic translation initiation factor 4H OS=Homo sapiens OX=9606 GN=EIF4H PE=1 SV=5
Q5XI72	Eukaryotic translation initiation factor 4H OS=Rattus norvegicus OX=10116 GN=Eif4h PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR034229	Domain	eIF4H, RNA recognition motif	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23236	EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005844	Cellular Component	obsolete polysome	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K24086	EIF4H; translation initiation factor 4H	-	Translation factors	ko03012	deepkoala