Detailed information of scaffold56.g37.t3 in Morbakka virulenta

Genomic Location: scaffold56:1582283...1617408
NR annotation: MCG8035099.1, hypothetical protein [Candidatus Thiodiazotropha taylori]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q9QZA2Programmed cell death 6-interacting protein OS=Rattus norvegicus OX=10116 GN=Pdcd6ip PE=1 SV=2
Q9WU78Programmed cell death 6-interacting protein OS=Mus musculus OX=10090 GN=Pdcd6ip PE=1 SV=3
Q8WUM4Programmed cell death 6-interacting protein OS=Homo sapiens OX=9606 GN=PDCD6IP PE=1 SV=1
Gene familySubfamily
Ubiquitin FamilyE3|E3 activity RING|PHD

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00628PHDPHD-fingerDomainInterproscan
PF13949ALIX_LYPXL_bndALIX V-shaped domain binding to HIV DomainInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF03097BRO1BRO1-like domainRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR019787DomainZinc finger, PHD-fingerInterproscan
IPR025304DomainALIX V-shaped domainInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR004328DomainBRO1 domainInterproscan
IPR011011Homologous_superfamilyZinc finger, FYVE/PHD-typeInterproscan
IPR036691Homologous_superfamilyEndonuclease/exonuclease/phosphatase superfamilyInterproscan
IPR013083Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR045251FamilyVacuolar protein-sorting protein Bro1-likeInterproscan
IPR019786Conserved_siteZinc finger, PHD-type, conserved siteInterproscan
IPR038499Homologous_superfamilyBRO1 domain superfamilyInterproscan
IPR001965DomainZinc finger, PHD-typeInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR23030PCD6 INTERACTING PROTEIN-RELATEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0000281Biological Processmitotic cytokinesisInterproscan
GO:0005768Cellular ComponentendosomeInterproscan
GO:0071985Biological Processmultivesicular body sorting pathwayInterproscan

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