Detailed information of scaffold56.g40.t1 in Morbakka virulenta

Genomic Location: scaffold56:1627817...1729992
NR annotation: KAI5106751.1, hypothetical protein C0J45_2389 [Silurus meridionalis]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
P13612Integrin alpha-4 OS=Homo sapiens OX=9606 GN=ITGA4 PE=1 SV=3
Q13797Integrin alpha-9 OS=Homo sapiens OX=9606 GN=ITGA9 PE=1 SV=2
Q91687Integrin alpha-4 OS=Xenopus laevis OX=8355 GN=itga4 PE=2 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF03372Exo_endo_phosEndonuclease/Exonuclease/phosphatase familyDomainInterproscan
PF20806Integrin_A_Ig_3Integrin alpha Ig-like domain 3DomainInterproscan
PF01839FG-GAPFG-GAP repeatRepeatInterproscan
PF20805Integrin_A_Ig_2Integrin alpha Ig-like domain 2DomainInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR043128Homologous_superfamilyReverse transcriptase/Diguanylate cyclase domainInterproscan
IPR005135DomainEndonuclease/exonuclease/phosphataseInterproscan
IPR048286DomainIntegrin alpha, third immunoglobulin-like domainInterproscan
IPR013517RepeatFG-GAP repeatInterproscan
IPR048285DomainIntegrin alpha, second immunoglobulin-like domainInterproscan
IPR013519RepeatIntegrin alpha beta-propellorInterproscan
IPR032695Homologous_superfamilyIntegrin domain superfamilyInterproscan
IPR028994Homologous_superfamilyIntegrin alpha, N-terminalInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR018184Conserved_siteIntegrin alpha chain, C-terminal cytoplasmic region, conserved siteInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR000413FamilyIntegrin alpha chainInterproscan
IPR036691Homologous_superfamilyEndonuclease/exonuclease/phosphatase superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR23220INTEGRIN ALPHAInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005178Molecular Functionintegrin bindingInterproscan
GO:0007160Biological Processcell-matrix adhesionInterproscan
GO:0007229Biological Processintegrin-mediated signaling pathwayInterproscan
GO:0008305Cellular Componentintegrin complexInterproscan
GO:0009897Cellular Componentexternal side of plasma membraneInterproscan
GO:0033627Biological Processcell adhesion mediated by integrinInterproscan
GO:0098609Biological Processcell-cell adhesionInterproscan
GO:0003824Molecular Functioncatalytic activityInterproscan
GO:0007155Biological Processcell adhesionInterproscan

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