Gene detail

Detailed information of scaffold56.g44.t3 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold56:555914...601240
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold56.g44.t3

ttttcttaccctctttattgagccagccattttgtactttggttgatgtgaagcacagatcagtcagtgatgtgaagttgtagtgattcagttgttgttgtgtaatttagcgcgccattcttacatagcctctatctcatgttagaccacgccttcgcagcgacgcatctaaaagtgcgttctgggctgagcgagaactgatattttctcttttcttgctgtaactacgttcaagactttgctgcaaatagattttgatattatggcatgaattcttccagaagatgtgccactaattgaccaaaagttttgcgggaaacggaatatgtaccgaaagagaggctaacttttcagatgatgcaacctcgtgatgatgagggaaatggtagctgcctttgaagttgaaaagttgaaactggaaggtagatgtatggccaatttaaatccatttcaagatttagcacattaatatcaaacttcaaacgagtcccacacactgctatctgtaacaaagagccgtctgcttggctgcacagagtcacacactcagcttcatcgggtgcagacatggccaagtctgttggagacagccacaactttccaaaagaggaagagcatattcttgagatgtggaagaaacttgatgcattcaagacatctgtgaagcaatcagaaggaaaaccaagatactcattttatgatgggccaccatttgcaaccggattgcctcattatggtcacatattagctggaacaataaaggacattgtcactaggtttgctcatcagtcaggctttcatgttgagagaagatttggttgggattgtcatggtcttccagtggagtttgaaattgatcagaagcttggtatcaagggtccagatgatgtgaagaagatgggaattgaaaactacaatgcagaatgcagaaaaattgtcatgagatattcaaaagaatgggagtttacagtaacaaggcttgggcgatggatcgattttgaaaatgattacaagacactgtacccatcgttcatggagtctgtttggtgggttttcaagcaactgtttgataaagacatggtctatagagggttcagggttatgccatattcgaccaagtgcaatactcctctgtcaaattttgaatcaaatcagaattacaaagaagtcaacgatcctgctgttattgtgagctttccgcttgaagaaaatccagacgtgagcatgatagcatggacaacaacaccatggacattgccaagtaatttagcacttgtcgtcaacgctaacttcgattatgttaaagtcaaagataataacacaaatcgaacttacattatgatggaagcaagattaagtgctttattcaaaaaggaatcagagtacacaattttagaaagattcaaaggttcaactttaaaaggaaaacgttacacaccaccgtttaattattttattcatatgaaaaagagaggtgcattccagatttttgttgatgattacgtaacagctgacagtggtactggtgttgtacattctgcgccggcatttggtgaggacgatttcagagtttgtatggcgaatggggttgtagagaaaggaggagagttaccgtgtcccgttgatgcaagtggaatattcactgatcctgttactcacttcaaaaaccaatacgtgaaggatgcagataagcacattttgaaaatgttgaaacaaaatggaaaccttgttcatcagagcaacatcaaacatagttatccattttgctggaggtctgatactccgcttatctacaaagctgtccctggttggtttgtaggagttgaagggatagtccaaaaattgcttgcaaataacaagaaatgctattgggttccagagtttgtgaaggaaaagaggttccacaattggttggaaaatgcacgagattggaatatatcaagaaacagatattggggaacgccaattccattatgggttagcgatgatttcaaagaggttgtatgcattggttcaatcaaggaacttgaagaactttctggtgtcaaagttgacgatcttcatcgagaaagtgttgatggcatcacaattccctcaaagaatggcaaaggcgtcctccgcagggtttctgaagtcttcgattgctggtttgaaagcggaagtatgccctatgcacagtcacattatccttttgagaataaagaaatatttgagaagtcatttccagctgatttcattgctgaaggaattgatcaaacaagaggatggttctacactttgctggttttatcaactgctttattcgacaagccaccatacaaaaatctcatcgtcaatggtcttgtacttgcttctgatggaacaaagatgagcaagagaaagaagaactatcctgacccattggaagttgtaaacaaatatggtgcagatgcacttaggagcgtttggtcgcctcgagtcgttgtggcattgcttgtagatcatggaatagaatttgtgtttgaagaaaagaaattgcaagaatccaacaactacatggaccggtggattttgtcattcacacaaagtcttctgctttttgttaaacaagaaatggatgcttatcgattgtacaccgtcgttccccgtttggtgaaattcatcgacaacctaacaaattggtatgtcagatcgaaccgaaagagattaaagagtgaatttgggcccaaagatggtgacattgccttgcatacccttttcgcagtggtgctaacaatggtgaaagtgatggccccatttacgccattcttgaccgagcacatgtaccaaaatctgaaacattttattgttgaagaaaaaagtaacaatgttgatgatggaagtgtacattatttgatgctcccatctgcaaggacagagtttatccatgaagatgtagaacgtgctgtatcaagaatgcaaactatcattgaactagggagagtggcacgagaccgacgcacactgccaatcaaatatcctctaccagaagtaatcatcattcacaaagattcaacttacctatcagatgtttcttcactcgataggtacattttagaggaactgaatcttcgaaagatcacaacgtcctgtgataaacaaaggtatggtctgaaactcaaagcggatgcggattttcaagttctgggtaggagactcaaaggagattttaagaaagttctagaagcactcaaagacatcagcgaggaagaactgaagaaatttcaagaagaaggaaaaatcgttgttgcaggtcatgaattatctggcaatgatctcaagctcaactacacatttggtgatcacggcgagctgtctcaaaaatacgagcctcattccgatggcgaggttttaatcctgttagatattacaccagatcaaagtatggttaatgaaggcattgcgagagaagttgtcaacagaatccagaggcttcgaaaaaaggcaaagcttgtgccaaccgatgacataacaatagcatatgatattcaacaacttggatcttcacaagctcaaaaggatgctgctaaattgctgatggagatttcagaatctcatgcagaatacatcaatgattctgtcaaaaagaaagttgtcaaggttccaggccctagaagccttcaagaagttattaatgaggatatggaggtgaaaggtgcaaagcttagtttatggatctatcgaggaacagaatcagagtcagcgcaagacaatcacagcccagtttgtagtttcgttaatcttgaattgaaaaatgcaaatccaagaatgggcgcttctggcaaacatgcaactgtgttgttagaaaatccccgtggtgacttcccgttgtccgcagttgaattgaaacaacaggctgccgttatctacggtcttcatggcgttgattttgtagtgtccacgagcccatcattaaatccagccaatcagatgtgtgacagacttcctttaaagttagttgatagagatgcaagtagctgtgcatgcaagtctaagattaggagctccttatgcaagtctaaaattagcctattctgttgaatgatttcgacacgtgtgtggacattatttagcaagaggaacaatagcgtgcataggcactttctttgtcttagttatagattactagactgattacgatgagtcccagtaatcgctattcaaaacgagactattacaccagaccgagaccgctcttactgggactcataatattacggcaatatttttggactgacttttttcacttttgaacgcccttgggaacgaggctgctatacacagccatgtacaaagtatacaacaaaatacaacgccattagaatc

Transcript

scaffold56.g44.t3

TTTTCTTACCCTCTTTATTGAGCCAGCCATTTTGTACTTTGGTTGATGTGAAGCACAGATCAGTCAGTGATGTGAAGTTGTAGTGATTCAGTTGTTGTTGTGTAATTTAGCGCGCCATTCTTACATAGCCTCTATCTCATGTTAGACCACGCCTTCGCAGCGACGCATCTAAAAGTGCGTTCTGGGCTGAGCGAGAACTGATATTTTCTCTTTTCTTGCTGTAACTACGTTCAAGACTTTGCTGCAAATAGATTTTGATATTATGGCATGAATTCTTCCAGAAGATGTGCCACTAATTGACCAAAAGTTTTGCGGGAAACGGAATATGTACCGAAAGAGAGGCTAACTTTTCAGATGATGCAACCTCGTGATGATGAGGGAAATGGTAGCTGCCTTTGAAGTTGAAAAGTTGAAACTGGAAGGTAGATGTATGGCCAATTTAAATCCATTTCAAGATTTAGCACATTAATATCAAACTTCAAACGAGTCCCACACACTGCTATCTGTAACAAAGAGCCGTCTGCTTGGCTGCACAGAGTCACACACTCAGCTTCATCGGGTGCAGACATGGCCAAGTCTGTTGGAGACAGCCACAACTTTCCAAAAGAGGAAGAGCATATTCTTGAGATGTGGAAGAAACTTGATGCATTCAAGACATCTGTGAAGCAATCAGAAGGAAAACCAAGATACTCATTTTATGATGGGCCACCATTTGCAACCGGATTGCCTCATTATGGTCACATATTAGCTGGAACAATAAAGGACATTGTCACTAGGTTTGCTCATCAGTCAGGCTTTCATGTTGAGAGAAGATTTGGTTGGGATTGTCATGGTCTTCCAGTGGAGTTTGAAATTGATCAGAAGCTTGGTATCAAGGGTCCAGATGATGTGAAGAAGATGGGAATTGAAAACTACAATGCAGAATGCAGAAAAATTGTCATGAGATATTCAAAAGAATGGGAGTTTACAGTAACAAGGCTTGGGCGATGGATCGATTTTGAAAATGATTACAAGACACTGTACCCATCGTTCATGGAGTCTGTTTGGTGGGTTTTCAAGCAACTGTTTGATAAAGACATGGTCTATAGAGGGTTCAGGGTTATGCCATATTCGACCAAGTGCAATACTCCTCTGTCAAATTTTGAATCAAATCAGAATTACAAAGAAGTCAACGATCCTGCTGTTATTGTGAGCTTTCCGCTTGAAGAAAATCCAGACGTGAGCATGATAGCATGGACAACAACACCATGGACATTGCCAAGTAATTTAGCACTTGTCGTCAACGCTAACTTCGATTATGTTAAAGTCAAAGATAATAACACAAATCGAACTTACATTATGATGGAAGCAAGATTAAGTGCTTTATTCAAAAAGGAATCAGAGTACACAATTTTAGAAAGATTCAAAGGTTCAACTTTAAAAGGAAAACGTTACACACCACCGTTTAATTATTTTATTCATATGAAAAAGAGAGGTGCATTCCAGATTTTTGTTGATGATTACGTAACAGCTGACAGTGGTACTGGTGTTGTACATTCTGCGCCGGCATTTGGTGAGGACGATTTCAGAGTTTGTATGGCGAATGGGGTTGTAGAGAAAGGAGGAGAGTTACCGTGTCCCGTTGATGCAAGTGGAATATTCACTGATCCTGTTACTCACTTCAAAAACCAATACGTGAAGGATGCAGATAAGCACATTTTGAAAATGTTGAAACAAAATGGAAACCTTGTTCATCAGAGCAACATCAAACATAGTTATCCATTTTGCTGGAGGTCTGATACTCCGCTTATCTACAAAGCTGTCCCTGGTTGGTTTGTAGGAGTTGAAGGGATAGTCCAAAAATTGCTTGCAAATAACAAGAAATGCTATTGGGTTCCAGAGTTTGTGAAGGAAAAGAGGTTCCACAATTGGTTGGAAAATGCACGAGATTGGAATATATCAAGAAACAGATATTGGGGAACGCCAATTCCATTATGGGTTAGCGATGATTTCAAAGAGGTTGTATGCATTGGTTCAATCAAGGAACTTGAAGAACTTTCTGGTGTCAAAGTTGACGATCTTCATCGAGAAAGTGTTGATGGCATCACAATTCCCTCAAAGAATGGCAAAGGCGTCCTCCGCAGGGTTTCTGAAGTCTTCGATTGCTGGTTTGAAAGCGGAAGTATGCCCTATGCACAGTCACATTATCCTTTTGAGAATAAAGAAATATTTGAGAAGTCATTTCCAGCTGATTTCATTGCTGAAGGAATTGATCAAACAAGAGGATGGTTCTACACTTTGCTGGTTTTATCAACTGCTTTATTCGACAAGCCACCATACAAAAATCTCATCGTCAATGGTCTTGTACTTGCTTCTGATGGAACAAAGATGAGCAAGAGAAAGAAGAACTATCCTGACCCATTGGAAGTTGTAAACAAATATGGTGCAGATGCACTTAGGAGCGTTTGGTCGCCTCGAGTCGTTGTGGCATTGCTTGTAGATCATGGAATAGAATTTGTGTTTGAAGAAAAGAAATTGCAAGAATCCAACAACTACATGGACCGGTGGATTTTGTCATTCACACAAAGTCTTCTGCTTTTTGTTAAACAAGAAATGGATGCTTATCGATTGTACACCGTCGTTCCCCGTTTGGTGAAATTCATCGACAACCTAACAAATTGGTATGTCAGATCGAACCGAAAGAGATTAAAGAGTGAATTTGGGCCCAAAGATGGTGACATTGCCTTGCATACCCTTTTCGCAGTGGTGCTAACAATGGTGAAAGTGATGGCCCCATTTACGCCATTCTTGACCGAGCACATGTACCAAAATCTGAAACATTTTATTGTTGAAGAAAAAAGTAACAATGTTGATGATGGAAGTGTACATTATTTGATGCTCCCATCTGCAAGGACAGAGTTTATCCATGAAGATGTAGAACGTGCTGTATCAAGAATGCAAACTATCATTGAACTAGGGAGAGTGGCACGAGACCGACGCACACTGCCAATCAAATATCCTCTACCAGAAGTAATCATCATTCACAAAGATTCAACTTACCTATCAGATGTTTCTTCACTCGATAGGTACATTTTAGAGGAACTGAATCTTCGAAAGATCACAACGTCCTGTGATAAACAAAGGTATGGTCTGAAACTCAAAGCGGATGCGGATTTTCAAGTTCTGGGTAGGAGACTCAAAGGAGATTTTAAGAAAGTTCTAGAAGCACTCAAAGACATCAGCGAGGAAGAACTGAAGAAATTTCAAGAAGAAGGAAAAATCGTTGTTGCAGGTCATGAATTATCTGGCAATGATCTCAAGCTCAACTACACATTTGGTGATCACGGCGAGCTGTCTCAAAAATACGAGCCTCATTCCGATGGCGAGGTTTTAATCCTGTTAGATATTACACCAGATCAAAGTATGGTTAATGAAGGCATTGCGAGAGAAGTTGTCAACAGAATCCAGAGGCTTCGAAAAAAGGCAAAGCTTGTGCCAACCGATGACATAACAATAGCATATGATATTCAACAACTTGGATCTTCACAAGCTCAAAAGGATGCTGCTAAATTGCTGATGGAGATTTCAGAATCTCATGCAGAATACATCAATGATTCTGTCAAAAAGAAAGTTGTCAAGGTTCCAGGCCCTAGAAGCCTTCAAGAAGTTATTAATGAGGATATGGAGGTGAAAGGTGCAAAGCTTAGTTTATGGATCTATCGAGGAACAGAATCAGAGTCAGCGCAAGACAATCACAGCCCAGTTTGTAGTTTCGTTAATCTTGAATTGAAAAATGCAAATCCAAGAATGGGCGCTTCTGGCAAACATGCAACTGTGTTGTTAGAAAATCCCCGTGGTGACTTCCCGTTGTCCGCAGTTGAATTGAAACAACAGGCTGCCGTTATCTACGGTCTTCATGGCGTTGATTTTGTAGTGTCCACGAGCCCATCATTAAATCCAGccaatcagatgtgtgacagacttcctttaaAGTTAGTTGATAGAGATGCAAGTAGCTGTGCATGCAAGTCTAAGATTAGGAGCTCCTTATGCAAGTCTAAAATTAGCCTATTCTGTTGAATGATTTCGACACGTGTGTGGACATTATTTAGCAAGAGGAACAATAGCGTGCATAGGCACTTTCTTTGTCTTAGTTATAGATTACTAGACTGATTACGatgagtcccagtaatcgctattcaaaacgagactattacaccagaccgagaccgctcttactgggactcataatattacggcaatatttttggactgacttttttcacttttgaacgcccttgggaacgaggctgctatacacagccatgtacaaagtatacaacaaaatacaacgccattagaatc

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08264 all species →	Anticodon_1	Anticodon-binding domain of tRNA ligase	Domain	Interproscan
PF00133 all species →	tRNA-synt_1	tRNA synthetases class I (I, L, M and V)	Domain	Interproscan
PF19302 all species →	DUF5915	Domain of unknown function (DUF5915)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014729 all species →	Homologous_superfamily	Rossmann-like alpha/beta/alpha sandwich fold	Interproscan
IPR009008 all species →	Homologous_superfamily	Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain	Interproscan
IPR001412 all species →	Conserved_site	Aminoacyl-tRNA synthetase, class I, conserved site	Interproscan
IPR013155 all species →	Domain	Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding	Interproscan
IPR033709 all species →	Domain	Isoleucyl tRNA synthetase type 2, anticodon-binding domain	Interproscan
IPR002300 all species →	Domain	Aminoacyl-tRNA synthetase, class Ia	Interproscan
IPR023586 all species →	Family	Isoleucine-tRNA ligase, type 2	Interproscan
IPR002301 all species →	Family	Isoleucine-tRNA ligase	Interproscan
IPR009080 all species →	Homologous_superfamily	Aminoacyl-tRNA synthetase, class Ia, anticodon-binding	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42780 all species →	SOLEUCYL-TRNA SYNTHETASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0002161 all species →	Molecular Function	aminoacyl-tRNA editing activity	Interproscan
GO:0006418 all species →	Biological Process	tRNA aminoacylation for protein translation	Interproscan
GO:0000166 all species →	Molecular Function	nucleotide binding	Interproscan
GO:0004812 all species →	Molecular Function	aminoacyl-tRNA ligase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0000049 all species →	Molecular Function	tRNA binding	Interproscan
GO:0004822 all species →	Molecular Function	isoleucine-tRNA ligase activity	Interproscan
GO:0006428 all species →	Biological Process	isoleucyl-tRNA aminoacylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01870	IARS, ileS; isoleucyl-tRNA synthetase	EC:6.1.1.5	Transfer RNA biogenesis	ko03016	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.