Gene detail

Detailed information of scaffold567.g11.t2 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold567:119279...133424
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold567.g11.t2

gtatcgttttcaccaattttttctagcacagggtatcaaaatgaggcaatttttctggagcaggttgtcaaaacatgtcaaaggggaatattctgctagatcgggtcctttttcggtcaaatttcatgtttttgagtatacttttcatcaattttttctagaacaggttatcattttgagcgaaaaattctggagcagggtaaaacaaatttttttcgtgggcacacccccgtacaaatttaagtcaagtacccccccccccccggngtttaaaggggctggataagaaatacgtaaacaaatccatggagaaagctgctaaaaggaaaacagtgctacaggaagcttatgggcaacaaggcttcttggcagattaccgagatttggttacatgggctaaagatgcaaagaataaattttcaactggagatttgccgagagatatgacattagctgaagatctcataatagaacatgatggggtattggtggagacgaaaggcaaccttcaaaggttggatgatgtgataaaatgcggagaagctctgaaccttaaaagcaaacaatcaacagatctgaaaccttttcttcgtgaacttgaatcttatcaaaaagaaataccagaactttggcagcaaaggcagtttcagctttcttcttgtaaaaatgccttggtgttctatcgtgatgcagactcgttcatctcaaaggaagacgtaatccagaaactgcttaccacagaggataccggggcaaccatggataatgtaacaactcttatcaagcaagttgatgaaatatcgcagagaatctctcaacaaaaagataaattaaacaaactggtgaaatctgctgacgacacgatcaacaaagagcattatgattcacctggtgtcatgtcgagaagagaagaaatcatcagatcacatgacaaaaccaatgcattgtttacagcgagagaagaggctttgaggcaatcacagagttttcaacagttccgaggagacatagaagagtttctctcgtggatcgatgacaaagttgcacttgtcaatgatgaatcttatatggatctctcaaacctgcaaactaaagttttgaaaaatcaagcactgcaagccgaagtcatttcaaatcaagtcacaaagaacagaatagaacaggtcggagaagaaatgattgcagaggagcaatcgtccgttgaagaggttagagatttgttggacattctggatgacaaatgggaactgcttgagaataacgtcaaagacaaacaagaaaggcttgagcaagcaacgagagcaagagcattttcaaacgcaacggatgacctggaaatatggtgtgatcaaactgagaatttgttgtcatcaaacgattttggggatgatttatcaagtgtcaagttcctacgtaacaaacatcaactcttagagaaagaaatacaacaacacaaagatgacttgcaggatcttgagaatgatgcaataaaaatgtgtcaagatggtaatttcaaatcaacttcaatcatggaaaaattagatcgtatcaaaaatcggtatggtaatattttcgatgctattactcaaattatttcactatttgtcgtatctttgagattctttcgccttctgcagaaactgcttctgaatgatgtttcgctatatgtgtcaacaaggacaattttcgtaacaataacatccctttcttctaactgacatttttcgagatactatctgtgaaagtcttacggattttctccagaagagctagacccccgtttaagcgcttcggaatacagtaaaaaccttcatttattaagaacctacagcctgaaatcatgtattttgtacccaatggataagaactatttcagcctgatatcataactaggttcttaataaagggtttcattcattcattgggaaataaatgcaatctgtttgccaatcaacctctttcgtgaactccaaaacattacttacagaactgtaataggcagggcctgcaggggtaaactgggtaagcttgggttgaaatggataggaccaagagtttaagtaagtttggctaagatttagattcacatatttccctttgttaagaacctacatcctgattactggatgtgcctcattgcataagaacctaaacaggctgagttcaaaatcttaggttcttatgtgcgggtttttattgtatgcgcactagcgactgcagggtgatcatccttcatttttcctttgtgaattcgctcatgccccaaagcgcttcacccattccattgatcagcgaaccaatcagagttattgtcttttccatagtgatttacaaagggggatttcgcagtatcccgaacaagacacacttctagcctgcgcagttatcaatgatcgcgaacaaagtgatttctgctgc

Transcript

scaffold567.g11.t2

gtatcgttttcaccaattttttctagcacagggtatcaaaatgaggcaatttttctggagcaggttgtcaaaacatgtcaaaggggaatattctgctagatcgggtcctttttcggtcaaatttcatgtttttgagtatacttttcatcaattttttctagaacaggttatcattttgagcgaaaaattctggagcagggtaaaacaaatttttttcgtgggcacacccccgtacaaatttaagtcaagtacccccccccccCCGGNGTttaaaggggctggataagaaatacgtaaacaaatccatgGAGAAAGCTGCTAAAAGGAAAACAGTGCTACAGGAAGCTTATGGGCAACAAGGCTTCTTGGCAGATTACCGAGATTTGGTTACATGGGCTAAAGATGCAAAGAATAAATTTTCAACTGGAGATTTGCCGAGAGATATGACATTAGCTGAAGATCTCATAATAGAACATGATGGGGTATTGGTGGAGACGAAAGGCAACCTTCAAAGGTTGGATGATGTGATAAAATGCGGAGAAGCTCTGAACCTTAAAAGCAAACAATCAACAGATCTGAAACCTTTTCTTCGTGAACTTGAATCTTATCAAAAAGAAATACCAGAACTTTGGCAGCAAAGGCAGTTTCAGCTTTCTTCTTGTAAAAATGCCTTGGTGTTCTATCGTGATGCAGACTCGTTCATCTCAAAGGAAGACGTAATCCAGAAACTGCTTACCACAGAGGATACCGGGGCAACCATGGATAATGTAACAACTCTTATCAAGCAAGTTGATGAAATATCGCAGAGAATCTCTCAACAAAAAGATAAATTAAACAAACTGGTGAAATCTGCTGACGACACGATCAACAAAGAGCATTATGATTCACCTGGTGTCATGTCGAGAAGAGAAGAAATCATCAGATCACATGACAAAACCAATGCATTGTTTACAGCGAGAGAAGAGGCTTTGAGGCAATCACAGAGTTTTCAACAGTTCCGAGGAGACATAGAAGAGTTTCTCTCGTGGATCGATGACAAAGTTGCACTTGTCAATGATGAATCTTATATGGATCTCTCAAACCTGCAAACTAAAGTTTTGAAAAATCAAGCACTGCAAGCCGAAGTCATTTCAAATCAAGTCACAAAGAACAGAATAGAACAGGTCGGAGAAGAAATGATTGCAGAGGAGCAATCGTCCGTTGAAGAGGTTAGAGATTTGTTGGACATTCTGGATGACAAATGGGAACTGCTTGAGAATAACGTCAAAGACAAACAAGAAAGGCTTGAGCAAGCAACGAGAGCAAGAGCATTTTCAAACGCAACGGATGACCTGGAAATATGGTGTGATCAAACTGAGAATTTGTTGTCATCAAACGATTTTGGGGATGATTTATCAAGTGTCAAGTTCCTACGTAACAAACATCAACTCTTAGAGAAAGAAATACAACAACACAAAGATGACTTGCAGGATCTTGAGAATGATGCAATAAAAATGTGTCAAGATGGTAATTTCAAATCAACTTCAATCATGGAAAAATTAGATCGTATCAAAAATCGGTATGGTAATATTTTCGATGCTATTACTCAAATTATTTCACTATTTGTCGTATCTTTGAGATTCTTTCGCCTTCTGCAGAAACTGCTTCTGAATGATGTTTCGCTATATGTGTCAACAAGGACAATTTTCGTAACAATAACATCCCTTTCTTCTAACTGACAtttttcgagatactatctgtgaaagtcttacggattttctccagaagagctagacccccgtttaagcgcttcggaataCAGtaaaaaccttcatttattaagaacctacagcctgaaatcatgtattttgtacccaatggataagaactatttcagcctgatatcataactaggttcttaataaagggtttcattcattcattgggaaataaatgcaatctgtttgccaatcaacctctttcgtgaactccaaaacattacttacagaactgtaataggcagggcctgcaggggtaaactgggtaagcttgggttgaaatggataggaccaagagtttaagtaagtttggctaagatttagattcacatatttccctttgttaagaacctacatcctgattactggatgtgcctcattgcataagaacctaaacaggctgagttcaaaatcttaggttcttatgtgcgggtttttattgtatgcgcactagcgactgcagggtgatcatccttcatttttcctttgtgaattcgctcatgccccaaagcgcttcacccattccattgatcagcgaaccaatcagagttattgtcttttccatagtgatttacaaagggggatttcgcagtatcccgaacaaGACACACTTCTAGCCTGCGCAGTTATCAATGATCGCGAACAAAGTGATTTCTGCTGC

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00435 all species →	Spectrin	Spectrin repeat	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018159 all species →	Repeat	Spectrin/alpha-actinin	Interproscan
IPR002017 all species →	Repeat	Spectrin repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11915 all species →	SPECTRIN/FILAMIN RELATED CYTOSKELETAL PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0030036 all species →	Biological Process	actin cytoskeleton organization	Interproscan
GO:0030054 all species →	Cellular Component	cell junction	Interproscan
GO:0030864 all species →	Cellular Component	cortical actin cytoskeleton	Interproscan
GO:0042995 all species →	Cellular Component	cell projection	Interproscan
GO:0051015 all species →	Molecular Function	actin filament binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for scaffold567.g11.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.