Gene detail

Detailed information of scaffold567.g3.t1 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold567:10898...14754
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold567.g3.t1

gtcacgtcactgaaaaggcaagcagcagcaaagactcgaggtgggtaaagtaggcctttgacctacaaaactttgatttatgcttgcgtagcgttccaccaacaaattgtgtctagcagatataaacattagtttcaaagaacactaaaatcatgttgaagtggctctcactggacgataaaagaaagaaagaacccgaagtgttcgactcggttgtcgaggggctcaaacgcctatacaagacgaagctccttccgttggaggaacactatcgctttcatgaattccactcaccgttgcttgaagattctgacttcggtgcaaagccaatggttctcctagttggtcagtactcaacagggaagacaactttcatcaaatatcttttggagaaagaatttccaggcatgagggtcggcccagaaccgaccacagatagttttactgcagtaatgtttggtcaacacgaaaggatcatcccaggcaatgctttggtcgttgaccaaaagaaacaatttagaactttgacaagttttggtaatgcatttctgaatcggttcagttgctccgagatgccaaattcagtcctggatacactcacgttggtcgacacgcctggtattttgtcaggagaaaaacaatcaataagcagagggtatgactttactggggttttggagtggtttgcagaaagggtagacagaatcatcctgctcttcgatgctcacaagctcgacatatcagatgaattccaacgaagtatccaagcactgcatggttacgatgataagataagaattgttttgaacaaagcagacatgatcacgccccaacaactgatgagggtctatggagcactgatgtggtcacttggcaaggtcatcaagactcctgaagtgacaagagtgtatattgggtcattttgggatcagcctctcaccattgatgacaacagacggctgtttgaagcagaagaaaatgacctgttcaatgatttgcaaagtttgccaagaaatgttgccctcagaaaattgaatgacctcatcaaaagagcaaggcttgcaaagctggatattgctgatgaatttgaacgcagcattactgctttgcatggctatgatgataaaatcagaatcattttgaataagtcagatatggtgacgtcacagcaattaatgagggtctatggagcattgatgtgggcccttgggaaggtcatcaagacccctgaagtggcccgggtctacattggttctttttgggaccaacctttgttcataaatgacaacaggaagttatttgaggcagaggaacatgatctactcaaggatttagaaagcttgccaaagagtttggctgtcaggaagttgaatgattttgtcaaaagggctagattcgtgaaggtgattgactgccttcagttggacttctccaagtctcgctcttgctcaacaagcgaaggggaggggagaagaaagaagaaaagggaaggggaaggagaacgagacttgtggactacgtgttgtgaaaatgagactccattgtctgatctatgcaccaatcaagatcttgactggcggctttctttcatgttagcaggagggctaatcaaaaccgagcatatgaattcttaacctcgtttttggaacttgtagttcacaggtctctctcgccttcccctttccttttcttcttcctcttcacctcgttgccccttccattgtttattgatcaagagcgagacttggagcaagtccagccttcagttagcacccaataaaatgatataagaatactgtagttacttgctttgtcatttcaacatgatatcattgatgatgtcattgttttaatgaattaagattatccacatattcagtccctaccgcagtctcttagtacaggctgaaatttggtttaaaaagtatcatagacataagaacacattcagcctgaaaaatgaaaattgttcttatgtaaaaagctggatggcatgagttactgaattagatactgtcaatgtgtttgaactttgctaaatacaattatgcaaccaaa

Transcript

scaffold567.g3.t1

GTCACGTCACTGAAAAGGCAAGCAGCAGCAAAGACTCGAGGTGGGTAAAGTAGGCCTTTGACCTACAAAACTTTGATTTATGCTTGCGTAGCGTTCCACCAACAAATTGTGTCTAGCAGATATAAACATTAGTTTCAAAGAACACTAAAATCATGTTGAAGTGGCTCTCACTGGACGATAAAAGAAAGAAAGAACCCGAAGTGTTCGACTCGGTTGTCGAGGGGCTCAAACGCCTATACAAGACGAAGCTCCTTCCGTTGGAGGAACACTATCGCTTTCATGAATTCCACTCACCGTTGCTTGAAGATTCTGACTTCGGTGCAAAGCCAATGGTTCTCCTAGTTGGTCAGTACTCAACAGGGAAGACAACTTTCATCAAATATCTTTTGGAGAAAGAATTTCCAGGCATGAGGGTCGGCCCAGAACCGACCACAGATAGTTTTACTGCAGTAATGTTTGGTCAACACGAAAGGATCATCCCAGGCAATGCTTTGGTCGTTGACCAAAAGAAACAATTTAGAACTTTGACAAGTTTTGGTAATGCATTTCTGAATCGGTTCAGTTGCTCCGAGATGCCAAATTCAGTCCTGGATACACTCACGTTGGTCGACACGCCTGGTATTTTGTCAGGAGAAAAACAATCAATAAGCAGAGGGTATGACTTTACTGGGGTTTTGGAGTGGTTTGCAGAAAGGGTAGACAGAATCATCCTGCTCTTCGATGCTCACAAGCTCGACATATCAGATGAATTCCAACGAAGTATCCAAGCACTGCATGGTTACGATGATAAGATAAGAATTGTTTTGAACAAAGCAGACATGATCACGCCCCAACAACTGATGAGGGTCTATGGAGCACTGATGTGGTCACTTGGCAAGGTCATCAAGACTCCTGAAGTGACAAGAGTGTATATTGGGTCATTTTGGGATCAGCCTCTCACCATTGATGACAACAGACGGCTGTTTGAAGCAGAAGAAAATGACCTGTTCAATGATTTGCAAAGTTTGCCAAGAAATGTTGCCCTCAGAAAATTGAATGACCTCATCAAAAGAGCAAGGCTTGCAAAGCTGGATATTGCTGATGAATTTGAACGCAGCATTACTGCTTTGCATGGCTATGATGATAAAATCAGAATCATTTTGAATAAGTCAGATATGGTGACGTCACAGCAATTAATGAGGGTCTATGGAGCATTGATGTGGGCCCTTGGGAAGGTCATCAAGACCCCTGAAGTGGCCCGGGTCTACATTGGTTCTTTTTGGGACCAACCTTTGTTCATAAATGACAACAGGAAGTTATTTGAGGCAGAGGAACATGATCTACTCAAGGATTTAGAAAGCTTGCCAAAGAGTTTGGCTGTCAGGAAGTTGAATGATTTTGTCAAAAGGGCTAGATTCGTGAAGgtgattgactgccttCAGTTGGACTTCTCCAAGTCTCGCTCTTGCTCAACAAGCGAAGGGgaggggagaagaaagaagaaaagggaaggggaaggagaacgagacttgtggactacgtgttgtgaaaatgagactccattgtctgatctatgcaccaatcaagatcttgactggcggctttctttcatgttagcaggagggctaatcaaaaccgagcatatgaattcttaacctcgtttttggaacttgtagttcacaggtctctctcgccttcccctttccttttcttcttcctCTTCACCTCGTTGCCCCTTCCATTGTTTATTGATCAAGAGCGAGACTTGGAGCAAGTCCAGCCTTCAGTTAGCACCCAATAAAATGATATAAGAATACTGTAGTTACTTGCTTTGTCATTTCAACATGATATCATTGATGATGTCATTGTTTTAATGAATTAAGATTATCCACATATTCAGTCCCTACCGCAGTCTCTTAGTAcaggctgaaatttggtttaaaaagtatcatagacataagaacacattcagcctgaaaaatgaaaattgttcttatgtaaaaagctggatggcatgagttactgaattagatactgtcaatgtgtttgaactttgctaaatacaattatgcaaccaaa

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00350 all species →	Dynamin_N	Dynamin family	Domain	Interproscan
PF16880 all species →	EHD_N	N-terminal EH-domain containing protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR045063 all species →	Domain	Dynamin, N-terminal	Interproscan
IPR030381 all species →	Domain	Dynamin-type guanine nucleotide-binding (G) domain	Interproscan
IPR031692 all species →	Domain	EH domain-containing protein, N-terminal	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11216 all species →	EH DOMAIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0006897 all species →	Biological Process	endocytosis	Interproscan
GO:0016197 all species →	Biological Process	endosomal transport	Interproscan
GO:0043231 all species →	Cellular Component	intracellular membrane-bounded organelle	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for scaffold567.g3.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.