Gene detail

Detailed information of scaffold575.g3.t1 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold575:20007...38304
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold575.g3.t1

gccattttgtttattgaatgctgtgctgaaagaaagtgactcaacaaaatgaaagaagttcaagatttcctcgctcaacaacagctttcagatacacagaatgctgaaaaatgggccaagcttcaacagctgtatgataaaaggctttggcatgaactgaccattgaagtcacatcatttctcaaagatgactatttcaagcaaaatggtggccttgttatgatttacgagaagttcatatctgactttgagcacagaataaatcccttgtcactgacagagatgattcttgatattgctcaagaactaaaaggtgttgaagacaaaatgaaactttttgaaaagacaaaagaaagagtgaaaaacagttcagaatcaagtatcttgttgctaactgcaatggggattgtgaagctggaaaataatcagatggatgaagttaaggctatgatatcagaagcacaaacaaagctagatagtctggatggggtcactagtgttcatggaagattttacgatttatccagtaattatttcaagatgctgaattgcaacagagaggtttcaatctttgtttggctgctctgcttggtagtgaggtgtataactttggcgaactgtttgccctcttgggagaatggaatccccctgaataggtcatcgataccagggggaggacttgttcatcctccgaagaggatactagctcacgatgttttgaaaacgttacatggaactgagcaaggctggcttatcgaccttctctatgcatttaactcaggaaatatatcaaaattcaaagaattggaacatcgatggaaagatcagcccgatctcgcagcaaaccagcacaaacttgttgaaaaattaacgttgctatcattaatggagcttgcattcaaacgctcatcaactgaaagaactattccatttactgtcatagcggagacgacaaaattaccccttaaagaggttgagcttctggttatgaaagccttgtcacttggtcttataaaaggttctattgatgaagttgatcaagtcgtacacataacatgggtgcagccaagagtcttagatcttaaccaggtaaatgctgatttttacaccgatggagccaacgttttatcaataagattgaatacagtaaatccccgcatataagaacctacttttttgagagctaggctgaaataggttcttattttaaaggtactaagacaaatttcaaggtataacggttcttatttgaagagtgccttgcgtaggccatttttgagccttcgccaaccattttcagccctattattcgttttagcagggttataatatatctaataaccaatgctaagctttcaaactgcaagggaggagatttaaactttaaaagcccactgggacaaaaatgaatttaacaatgacaatccaaaatcaactttgctacccctgctataagaacatatttttcatcaaactgaaacaggttcttaattacaaggtgcagaagttaggaaaaacagcctctaggttcttatttttgtaggttcttgtatgctgggatttactgtacagattgtcattttgcttccagattttttctgcatttgtaaaaaagctattagtgttgtctaatacagaatgtcctacaaaatttcaccccgtttgtgggctgctgtggaggagctgtagctttaatggtccttctgataacaaagttgcatagaagaggcttcaacttagactgacgacgtgattgcttgcattcgttcaacatttttaatctgatgctttatcttgactcatacaaggactcatgtagacttatgacgatgagtctcttgtttccctgtgctctttgacttcttgatggcgcttcagtcaacagagactcataatattactccgaaaaagttgaccctatttaggcctaatatgctgggattcctagcataccaatcagattgcgagatttggcaaagaacaatcagtttcgaaccttcaattcgattgacgcagttgactaaatttgaaggaagttg

Transcript

scaffold575.g3.t1

GCCATTTTGTTTATTGAATGCTGTGCTGAAAGAAAGTGACTCAACAAAATGAAAGAAGTTCAAGATTTCCTCGCTCAACAACAGCTTTCAGATACACAGAATGCTGAAAAATGGGCCAAGCTTCAACAGCTGTATGATAAAAGGCTTTGGCATGAACTGACCATTGAAGTCACATCATTTCTCAAAGATGACTATTTCAAGCAAAATGGTGGCCTTGTTATGATTTACGAGAAGTTCATATCTGACTTTGAGCACAGAATAAATCCCTTGTCACTGACAGAGATGATTCTTGATATTGCTCAAGAACTAAAAGGTGTTGAAGACAAAATGAAACTTTTTGAAAAGACAAAAGAAAGAGTGAAAAACAGTTCAGAATCAAGTATCTTGTTGCTAACTGCAATGGGGATTGTGAAGCTGGAAAATAATCAGATGGATGAAGTTAAGGCTATGATATCAGAAGCACAAACAAAGCTAGATAGTCTGGATGGGGTCACTAGTGTTCATGGAAGATTTTACGATTTATCCAGTAATTATTTCAAGATGCTGAATTGCAACAGAGAGGTTTCAATCTTTGTTTGGCTGCTCTGCTTGGTAGTGAGGTGTATAACTTTGGCGAACTGtttgccctcttgggagaatggaatccccctgaataggtcatcgataccagggggaggacttgttcatcctccgaagaggataCTAGCTCACGATGTTTTGAAAACGTTACATGGAACTGAGCAAGGCTGGCTTATCGACCTTCTCTATGCATTTAACTCAGGAAATATATCAAAATTCAAAGAATTGGAACATCGATGGAAAGATCAGCCCGATCTCGCAGCAAACCAGCACAAACTTGTTGAAAAATTAACGTTGCTATCATTAATGGAGCTTGCATTCAAACGCTCATCAACTGAAAGAACTATTCCATTTACTGTCATAGCGGAGACGACAAAATTACCCCTTAAAGAGGTTGAGCTTCTGGTTATGAAAGCCTTGTCACTTGGTCTTATAAAAGGTTCTATTGATGAAGTTGATCAAGTCGTACACATAACATGGGTGCAGCCAAGAGTCTTAGATCTTAACCAGGTAAATGCTGATTTTTACACCGATGGAGCCAACGTTTTATCAATAAGATTGAAtacagtaaatccccgcatataagaacctacttttttgagagctaggctgaaataggttcttattttaaaggtactaagacaaatttcaaggtataacggttcttatttgaagagtgccttgcgtaggccatttttgagccttcgccaaccattttcagccctattattcgttttagcagggttataatatatctaataaccaatgctaagctttcaaactgcaagggaggagatttaaactttaaaagcccactgggacaaaaatgaatttaacaatgacaatccaaaatcaactttgctacccctgctataagaacatatttttcatcaaactgaaacaggttcttaattacaaggtgcagaagttaggaaaaacagcctctaggttcttatttttgtaggttcttgtatgctgggatttactgtaCAGATTGTCATTTTGCTTCCAGATTTTTTCTGCATTTGTAAAAAAGCTATTAGTGTTGTCTAATACAGAATGTCCTACAAAATTTCACCCCGTTTGTGGGCTGCTGTGGAGGAGCTGTAGCTTTAATGGTCCTTCTGATAACAAAGTTGCATAGAAGAGGCTTCAACTTAGACTGACGACGTGATTGCTTGCATTCGTTCAACATTTTTAATCTGATGCTTTATCTTGACTCATACAAGGACTCATGtagacttatgacgatgagtctcttgtttccctgtgctctttgacttcttgatggcgcttcagtcaacagagactcataatattactccgaaaaagttgaccctatttaggcctaatatgctgggattcctagcataccaatcagattgcgagatttggcaaagaacaatcagtttcgaaccttcaattcgattgacgcagttgactaaatttgaaggaagttg

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01399 all species →	PCI	PCI domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000717 all species →	Domain	Proteasome component (PCI) domain	Interproscan
IPR036390 all species →	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR035298 all species →	Family	26S Proteasome non-ATPase regulatory subunit 13	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10539 all species →	26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 13	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005198 all species →	Molecular Function	structural molecule activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006511 all species →	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan
GO:0008541 all species →	Cellular Component	proteasome regulatory particle, lid subcomplex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for scaffold575.g3.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.