Genomic Location: scaffold577:18177...25943
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita · all data for this species · gene families
| CDS |
| scaffold577.g2.t2 |
| Transcript |
| scaffold577.g2.t2 |
| Protein |
| scaffold577.g2.t2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0001352 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00464 all species → | SHMT | Serine hydroxymethyltransferase | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR019798 all species → | Binding_site | Serine hydroxymethyltransferase, pyridoxal phosphate binding site | Interproscan |
| IPR015424 all species → | Homologous_superfamily | Pyridoxal phosphate-dependent transferase | Interproscan |
| IPR001085 all species → | Family | Serine hydroxymethyltransferase | Interproscan |
| IPR049943 all species → | Family | Serine hydroxymethyltransferase-like | Interproscan |
| IPR015421 all species → | Homologous_superfamily | Pyridoxal phosphate-dependent transferase, major domain | Interproscan |
| IPR015422 all species → | Homologous_superfamily | Pyridoxal phosphate-dependent transferase, small domain | Interproscan |
| IPR039429 all species → | Domain | Serine hydroxymethyltransferase-like domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11680 all species → | SERINE HYDROXYMETHYLTRANSFERASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0030170 all species → | Molecular Function | pyridoxal phosphate binding | Interproscan |
| GO:0004372 all species → | Molecular Function | glycine hydroxymethyltransferase activity | Interproscan |
| GO:0019264 all species → | Biological Process | glycine biosynthetic process from serine | Interproscan |
| GO:0035999 all species → | Biological Process | tetrahydrofolate interconversion | Interproscan |
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
| GO:0006565 all species → | Biological Process | L-serine catabolic process | Interproscan |
| GO:0006730 all species → | Biological Process | one-carbon metabolic process | Interproscan |
| GO:0008270 all species → | Molecular Function | zinc ion binding | Interproscan |
| GO:0046653 all species → | Biological Process | tetrahydrofolate metabolic process | Interproscan |
| GO:0046655 all species → | Biological Process | folic acid metabolic process | Interproscan |
| GO:0050897 all species → | Molecular Function | cobalt ion binding | Interproscan |
| GO:0070905 all species → | Molecular Function | serine binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K00600 | glyA, SHMT; glycine hydroxymethyltransferase | EC:2.1.2.1 | Antifolate resistance | ko01523 | deepkoala |
Transcript abundance of scaffold577.g2.t2 across 22 RNA-seq samples of Aurelia aurita. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| complete polyp | 3 | 0 | 0.00 | 0.00 | |
| polyp not induced | 2 | 0 | 0.00 | 0.00 | |
| polyp endoderm from body column | 1 | 0 | 0.00 | 0.00 | |
| jellyfish bell edge | 1 | 0 | 0.00 | 0.00 | |
| strobila non-segmented part | 1 | 0 | 0.00 | 0.00 | |
| polyp 12h induction with 5M2MI +20C | 1 | 0 | 0.00 | 0.00 | |
| polyp 24h induction with 5M2MI | 1 | 0 | 0.00 | 0.00 | |
| strobila segments | 1 | 0 | 0.00 | 0.00 | |
| strobila heads | 1 | 0 | 0.00 | 0.00 | |
| polyp 24h induction with 5M2MI +20C | 1 | 0 | 0.00 | 0.00 | |
| jellyfish ropalia | 1 | 0 | 0.00 | 0.00 | |
| polyp head region | 1 | 0 | 0.00 | 0.00 | |
| polyp 20h induction with 5M2MI +20C | 1 | 0 | 0.00 | 0.00 | |
| complete strobila | 1 | 0 | 0.00 | 0.00 | |
| 13 jellyfish ropalia | 1 | 0 | 0.00 | 0.00 | |
| complete juvenile jellyfish | 1 | 0 | 0.00 | 0.00 | |
| polyp ectoderm from body column | 1 | 0 | 0.00 | 0.00 | |
| jellyfish bell edge without ropalia | 1 | 0 | 0.00 | 0.00 | |
| 3 juvenile jellyfish (~7mm in diameter) | 1 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (AAURI1_TPM,
StringTie quantification over 22 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
