Gene detail

Detailed information of scaffold577.g7.t1 in Aurelia aurita

Genomic Location: scaffold577:69646...79505
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold577.g7.t1

cccctaaaactacccccagggtaacccccctttcaggaagtgggcattgttacgccagcccgaactgcctgaagaatatcacactttaaggtcggtgattggacaggaaaataattttcggaccaacgcacctgtcccacagagaattctgtggaaatgagaatggaaataggcagaatgaaaaaagccaaggcagagcgtaaaaagacaaggccaaattaggagggactgggagggtggggaaaataaacacaaacttgcaacaaataagcagcaatagcgaaaatacagctacacgtggatcacgataacggaatgaggaaatgcagcatacaaagcctgcatatacgccctcgccccacgtgactccaggtaacaacaggagtcacagcgttgcactgcttgaaaagatagaaccatgctcctccggggaggtattaactccagttaaactagcgtctaactgccatttaatactctcccctaaaactacccccagggtaacccccctttcaggaagtgggcattgttacgccagcccgaactgcctgaagaatatcacactttaaggtcggtgattggacaggaaaataattttcggaccaacgcacctgtcccacagagaattctgtggaaatgagaatggaaataggcagaatgaaaaaagccaaggcagagcgtaaaaagacaaggccaaattaggagggactgggagggtggggaaaataaacacaaagttgcaacaaataagcagcaatagcgaaaatacagctacacgtggatcacgataacggaatgaggaaatgcagcatacaaagcctgcatatacgccctcgccccacgtgactccaggtaacaacaggagtcacagcgttgcactgcttgaaaagatagaaccatgctcctccggggaggtattaactccagttaaactagcgtctaactgccatttaatactctcccctaaaactacccccagggtaacccccctttcaggaagtgggcattgttacgccagcccgaactgcctgaagaatatcacactttaaggtcggtgattggacaggaaaataattttcggaccaacgcacctgtcccacagagaattctgtggaaatgagaatggaaataggcagaatgaaaaaagccaaggcagagccaagtatcacccagtataatcttcctcgatgaaatagatgccattgcaccaaacagagaaagtgcatcaaaagaaatggaacggagaatcgtgtcacaacttctcgtctgcatggatgatcttgatcaaggtgactctgatgttttgttgatcggagcaacaaacagacctgattcgcttgatcctgcattgaggcgtgcaggaagatttgacagggaaatttgtttgggtatgccagaccaagctgctagaaaaaggattctcaacgttgtgtgtgatggtttacgattagccgacaacttccagtatgatgagattgcatcactcactcctggtttcgttggagctgatcttgtttcgctcacaagagaagcggccatgttcgctgttcaaaggatatttcaaaacatagaagagaaagtaacaccacctgcgccacagagtactgaggaatctcaaaattgcgaagaaacaccagttaaagagtcacctaaaagcaatgaaattgttccagatgccagatttaaaacaatatcttgggttaaagaccagcctccattgccttcggaagaacttgatcgtttcttcatcgaaatagaagacttcaagaatgctctaacaacagttcaaccatctgccaagagagaaggatttgcgacagtacctgatgttacatggcaagacattggagcattagaggatattcgcgatgaactttcacttgcaattttgcgtgtggtctcttactcaatgccatttaagcctggtttccatatgatcgttcctgtcgttcccgtcgctagtaaatttttcagcgacacgaacgacgcgaacgacagtagcgatcgaatggtttccatatgatcgctgctgtcgttcccgtcgctggaaattctttcagcaacaagaacgacacgaacgacacgaacgacgcgagcgacgggagcgatcgagctatttccatatgatcgctgctgtcgctcagtttgcatcacaggctcaaaataatgagactgggctcag

Transcript

scaffold577.g7.t1

cccctaaaactacccccagggtaacccccctttcaggaagtgggcattgttacgccagcccgaactgcctgaagaatatcacactttaaggtcggtgattggacaggaaaataattttcggaccaacgcacctgtcccacagagaattctgtggaaatgagaatggaaataggcagaatgaaaaaagccaaggcagagcgtaaaaagacaaggccaaattaggagggactgggagggtggggaaaataaacacaaacttgcaacaaataagcagcaatagcgaaaatacagctacacgtggatcacgataacggaatgaggaaatgcagcatacaaagcctgcatatacgccctcgccccacgtgactccaggtaacaacaggagtcacagcgttgcactgcttgaaaagatagaaccatgctcctccggggaggtattaactccagttaaactagcgtctaactgccatttaatactctcccctaaaactacccccagggtaacccccctttcaggaagtgggcattgttacgccagcccgaactgcctgaagaatatcacactttaaggtcggtgattggacaggaaaataattttcggaccaacgcacctgtcccacagagaattctgtggaaatgagaatggaaataggcagaatgaaaaaagccaaggcagagcgtaaaaagacaaggccaaattaggagggactgggagggtggggaaaataaacacaaagttgcaacaaataagcagcaatagcgaaaatacagctacacgtggatcacgataacggaatgaggaaatgcagcatacaaagcctgcatatacgccctcgccccacgtgactccaggtaacaacaggagtcacagcgttgcactgcttgaaaagatagaaccatgctcctccggggaggtattaactccagttaaactagcgtctaactgccatttaatactctcccctaaaactacccccagggtaacccccctttcaggaagtgggcattgttacgccagcccgaactgcctgaagaatatcacactttaaggtcggtgattggacaggaaaataattttcggaccaacgcacctgtcccacagagaattctgtggaaatgagaatggaaataggcagaatgaaaaaagccaaggcagagcCAAGTATCACCCAGTATAATCTTCCTCGATGAAATAGATGCCATTGCACCAAACAGAGAAAGTGCATCAAAAGAAATGGAACGGAGAATCGTGTCACAACTTCTCGTCTGCATGGATGATCTTGATCAAGGTGACTCTGATGTTTTGTTGATCGGAGCAACAAACAGACCTGATTCGCTTGATCCTGCATTGAGGCGTGCAGGAAGATTTGACAGGGAAATTTGTTTGGGTATGCCAGACCAAGCTGCTAGAAAAAGGATTCTCAACGTTGTGTGTGATGGTTTACGATTAGCCGACAACTTCCAGTATGATGAGATTGCATCACTCACTCCTGGTTTCGTTGGAGCTGATCTTGTTTCGCTCACAAGAGAAGCGGCCATGTTCGCTGTTCAAAGGATATTTCAAAACATAGAAGAGAAAGTAACACCACCTGCGCCACAGAGTACTGAGGAATCTCAAAATTGCGAAGAAACACCAGTTAAAGAGTCACCTAAAAGCAATGAAATTGTTCCAGATGCCAGATTTAAAACAATATCTTGGGTTAAAGACCAGCCTCCATTGCCTTCGGAAGAACTTGATCGTTTCTTCATCGAAATAGAAGACTTCAAGAATGCTCTAACAACAGTTCAACCATCTGCCAAGAGAGAAGGATTTGCGACAGTACCTGATGTTACATGGCAAGACATTGGAGCATTAGAGGATATTCGCGATGAACTTTCACTTGCAATTTTGCGTGTGGTCTCTTACTCAATGCCATTTAAgcctggtttccatatgatcgttcctgtcgttcccgtcgctagtaaatttttcagcgacacgaacgacgcgaacgacagtagcgatcgaatggtttccatatgatcgctgctgtcgttcccgtcgctggaaattctttcagcaacaagaacgacacgaacgacacgaacgacgcgagcgacgggagcgatcgagctatttccatatgatcgctgctgtcgctcagtttgcatcacaggctcaaaataatgagactgggctcag

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00004 all species →	AAA	ATPase family associated with various cellular activities (AAA)	Domain	Interproscan
PF17862 all species →	AAA_lid_3	AAA+ lid domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003959 all species →	Domain	ATPase, AAA-type, core	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR003960 all species →	Conserved_site	ATPase, AAA-type, conserved site	Interproscan
IPR041569 all species →	Domain	AAA ATPase, AAA+ lid domain	Interproscan
IPR050168 all species →	Family	AAA ATPase domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23077 all species →	AAA-FAMILY ATPASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0042254 all species →	Biological Process	ribosome biogenesis	Interproscan
GO:0051973 all species →	Biological Process	obsolete positive regulation of telomerase activity	Interproscan
GO:1990275 all species →	Molecular Function	preribosome binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for scaffold577.g7.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.