Gene detail

Detailed information of scaffold58.g10.t2 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold58:94302...100224
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold58.g10.t2

cttagttcaactttcccgacgcttacgatccacgatcgccgacggtcttaaggatcgtaagcaagtgtttccattaaatcgggaacgcaacgcagacgatcgcagacgatcgcagactgtcgccgatctccttacgatcgctctacgatttaatggaaaccaggctttagcccatggtctctgtcaaaccatatttgactggtcgttttcagacccatcaagccctgcctgttagttgtttgaaggtataggtattcataaattctttattctttctccttagctttatccatacttggttgtaaacgatgcttggttgacagaatcacgtagagaggaaagagtcctacaacttcttagaatggttaacctcttcttggaaaaaagaaaagcgactgctaggaggcaactacagtttaacgtgccaagagtagttgctgtttcaccacaaatgagattgattgaggataacccatcgatcatctccttgactgaaatttacagagagcgttgccaaagaaagaaaatagattgtgaagctgcaatagctcattattatgatcgtcttggttcattgcaagcatctgggttttcaacaaatcatcaagttttgagagacatcttaaaagaggttcaactaaatctgatttctgacaacatggtgaaagaatgggcaacatacacttatccaaatgctactgatttctggaccttcagaaaactgttcacacaacaagtggccctcgctgggtttgttgagttcacatttcacttgacacgattgaacccagagatgatcaacgttgcacgtgattgtggtcatgtgaccttcaacttcttcaaatttgaccttgacgattcgaaaggagaactagatgcaaataggccagtgccgttcagattaacgccaaacatgtgtgaattgatatcacccgtcggagtcagtggtattatcacgcattgcatgattgccgttgctcgatgcctggttcaaccacaattcagtattgcaagctattttaaagcaatactcaaagatgaaatgcttacatggcataaaaagaaaaatgacgaagcactcctaacaaacagcagcgtaccatctagtgaaatggatggcgaattgttgatcaccatggtaactaatgccacgaatgcaatcattacgagattacaaaatcttgcacagtttgaaaatgcagagtctaaggttggaactttgatatctgctgccatgaatcccgacaacctttgcaggatggacccagcatggaacccatggttgtagacctccatcagccgtatgacatttatatttcctgacatttagtttgaagagataatactataaggttatactataagaacggcaacataggctctatcctgtacggtaatagcagcaatattaaactgtttaagaacagctgcattgggtcatctactgtctcaaactacaacgatgtgttatagtcgaaattcgtatgaaaattgggatcaatccgagatcaaaacaattcgttgcaatcacgcgcgattgttttgttgctgtgatcaaagactaataagacatcgttaactgtgaataataaacacgtaaaatatcaaagctaaaagaactggggaaaatggcaacatggaatatgaatgattgatggtgattatctatagcaataaagtcaaaagacacgacagaaatcttgctttttatgtttgaagaatgaaaacattatgcaggggcttttgctccaaccggaaggaatacacctacctacctaggtaccaaggaatcaggaatgttgtaacaatgggcattatttatgcacacaatcgaaacaatcagccaagcatttgagatattcacagacagtgttgatgtatacaatcaaaacaattcagagatatttgggctaacaatcaaatttggcgttgttgccaattgacatttcctcattaaagctaattaactacttgctcctaacaataatggagctgccaactcattacaaggcaatcttcaaaatttgacctctttgacctggctcactgcccttactgtttgaaaaatcttcgatatggataactgttgccaagggaaccaacaaacccatataatactatcaagaaacaaatgtggcactgttatagtggcacctcttgacaggatagggtaaaacaaattgtcaatattgtcggccatccttcagttttactcagagcagtaggaagcattgtaaacttggaggggcacgccaatttaaaggcacttttttcgtaagaatggcactgtaatatacaacagatttttgacggggaaaatgtgatatatagaagcaaatggtacgagtgctgatagatatccgatttccttcacaatgaaacaaagtgagaagtaaacataaccaaatcacgaagtaaataataacaaaattaaacaactttctgtccgcattggtcttcaaaaggggcacatcctgagacaaaaagggcaccttttggtttgttgcaaaatcttgggggcacgtgccaccagtgcctccggttccctacgtctttggactctcactacatctaatgtaatagttttgatgcatatcaagaaatctggtctgcttcatcaagtgggctcgttattaggctacagccgtttcgatataaactaaatcgtgcattgcaattgcaaataaatattctactactttgaggcaagctatgtgcatgatctcattcttcaaacatggctaatgggggcctttaattatgtttgaagaatgaaaacattatgcaggggcttttgctccaaccggaaggaatacacctacctacctaggtaccaaggaatcaggaatgttgtaacaatgggcattatttatgcacacaatcgaaacaatcagccaagcatttgagatattcacagacagtgttgatgtatacaatcaaaacaattcagagat

Transcript

scaffold58.g10.t2

cttagttcaactttcccgacgcttacgatccacgatcgccgacggtcttaaggatcgtaagcaagtgtttccattaaatcgggaacgcaacgcagacgatcgcagacgatcgcagactgtcgccgatctccttacgatcgctctacgatttaatggaaaccaggcttTAGCCCATGGTCTCTGTCAAACCATATTTGACTGGTCGTTTTCAGACCCATCAAGCCCTGCCTGTTAGTTGTTTGAAGGTATAGGTATTCATAAATTCTTTATTCTTTCTCCTTAGCTTTATCCATACTTGGTTGTAAACGATGCTTGGTTGACAGAATCACGTAGAGAGGAAAGAGTCCTACAACTTCTTAGAATGGTTAACCTCTTCTTGGAAAAAAGAAAAGCGACTGCTAGGAGGCAACTACAGTTTAACGTGCCAAGAGTAGTTGCTGTTTCACCACAAATGAGATTGATTGAGGATAACCCATCGATCATCTCCTTGACTGAAATTTACAGAGAGCGTTGCCAAAGAAAGAAAATAGATTGTGAAGCTGCAATAGCTCATTATTATGATCGTCTTGGTTCATTGCAAGCATCTGGGTTTTCAACAAATCATCAAGTTTTGAGAGACATCTTAAAAGAGGTTCAACTAAATCTGATTTCTGACAACATGGTGAAAGAATGGGCAACATACACTTATCCAAATGCTACTGATTTCTGGACCTTCAGAAAACTGTTCACACAACAAGTGGCCCTCGCTGGGTTTGTTGAGTTCACATTTCACTTGACACGATTGAACCCAGAGATGATCAACGTTGCACGTGATTGTGGTCATGTGACCTTCAACTTCTTCAAATTTGACCTTGACGATTCGAAAGGAGAACTAGATGCAAATAGGCCAGTGCCGTTCAGATTAACGCCAAACATGTGTGAATTGATATCACCCGTCGGAGTCAGTGGTATTATCACGCATTGCATGATTGCCGTTGCTCGATGCCTGGTTCAACCACAATTCAGTATTGCAAGCTATTTTAAAGCAATACTCAAAGATGAAATGCTTACATGGCATAAAAAGAAAAATGACGAAGCACTCCTAACAAACAGCAGCGTACCATCTAGTGAAATGGATGGCGAATTGTTGATCACCATGGTAACTAATGCCACGAATGCAATCATTACGAGATTACAAAATCTTGCACAGTTTGAAAATGCAGAGTCTAAGGTTGGAACTTTGATATCTGCTGCCATGAATCCCGACAACCTTTGCAGGATGGACCCAGCATGGAACCCATGGTTGTAGACCTCCATCAGCCGTATGACATTTATATTTCCTGACATTTAGTTTGAAGAGATAATACTATAAGGTTATACTATAAGAACGGCAACATAGGCTCTATCCTGTACGGTAATAGCAGCAATATTAAACTGTTTAAGAACAGCTGCATTGGGTCATCTACTGTCTCAAACTACAACGATGTGTTATAGTCGAAATTCGTATGAAAATTGGGATCAATCCGAGATCAAAACAATTCGTTGCAATCACGCGCGATTGTTTTGTTGCTGTGATCAAAGACTAATAAGACATCGTTAACTGTGAATAATAAACACGTAAAATATCAAAGCTAAAAGAACTGGGGAAAATGGCAACATGGAATATGAATGATTGATGGTGATTATCTATAGCAATAAAGTCAAAAGACACGACAGAAATCTTGCTTTttatgtttgaagaatgaaaacattatgcaggggcttttgctccaaccggaaggaatacacctacctacctaggtaccaaggaatcaggaatgttgtaacaatgggcattatttatgcacacaatcgaaacaatcagccaagcatttgagatattcacagacagtgttgatgtatacaatcaaaacaattcagagatatttgggctaacaatcaaatttggcgttgttgccaattgacatttcctcattaaagctaattaactacttgctcctaacaataatggagctgccaactcattacaaggcaatcttcaaaatttgacctctttgacctggctcactgcccttactgtttgaaaaatcttcgatatggataactgttgccaagggaaccaacaaacccatataatactatcaagaaacaaatgtggcactgttatagtggcacctcttgacaggatagggtaaaacaaattgtcaatattgtcggccatccttcagttttactcagagcagtaggaagcattgtaaacttggaggggcacgccaatttaaaggcacttttttcgtaagaatggcactgtaatatacaacagatttttgacggggaaaatgtgatatatagaagcaaatggtacgagtgctgatagatatccgatttccttcacaatgaaacaaagtgagaagtaaacataaccaaatcacgaagtaaataataacaaaattaaacaactttctgtccgcattggtcttcaaaaggggcacatcctgagacaaaaagggcaccttttggtttgttgcaaaatcttgggggcacgtgccaccagtgcctccggttccctacgtctttggactctcactacatctaatgtaatagttttgatgcatatcaagaaatctggtctgcttcatcaagtgggctcgttattaggctacagccgtttcgatataaactaaatcgtgcattgcaattgcaaataaatattctactactttgaggcaagctatgtgcatgatctcattcttcaaacatggctaatgggggcctttaattatgtttgaagaatgaaaacattatgcaggggcttttgctccaaccggaaggaatacacctacctacctaggtaccaaggaatcaggaatgttgtaacaatgggcattatttatgcacacaatcgaaacaatcagccaagcatttgagatattcacagacagtgttgatgtatacaatcaaaacaattcagagat

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02260 all species →	FATC	FATC domain	Family	Interproscan
PF00454 all species →	PI3_PI4_kinase	Phosphatidylinositol 3- and 4-kinase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003152 all species →	Domain	FATC domain	Interproscan
IPR036940 all species →	Homologous_superfamily	Phosphatidylinositol 3-/4-kinase, catalytic domain superfamily	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR000403 all species →	Domain	Phosphatidylinositol 3-/4-kinase, catalytic domain	Interproscan
IPR050517 all species →	Family	DNA Damage Response and Repair Kinase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11139 all species →	ATAXIA TELANGIECTASIA MUTATED ATM -RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000124 all species →	Cellular Component	SAGA complex	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006281 all species →	Biological Process	DNA repair	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0035267 all species →	Cellular Component	NuA4 histone acetyltransferase complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for scaffold58.g10.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.