Gene detail

Detailed information of scaffold588.g6.t2 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold588:31292...43634
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold588.g6.t2

catgccaagaactgaaactattaaatagtttatggaaacaggatagagtttgatagacaaataaggttatgtcagggttatctttagagtttgacagacaaataatggtgtttcctgaggggaaaaatctgtacacaaatgaattggttgcaatcaagctggaacccttgaaatccagggcaccacaattgcatctggaatatcgtttttacaaagctcttggccagtcagatggcatccctcaagtctactactttggcccttgtggcaaatacaacgcaatggttatggaattactgggtccaagtctggaagatttgtttgacctctgtgaaagacagtttacacaaaagacagtactgctcattgccatgcaaatgatccgacggatagaatacgtgcataacaaacatatgatatatagagacataaaaccggagaatttcttgattggacgcaaacagaacggaactgataaaacaatatacattattgattttggtttagccaaggagtatattgacccggaaacgaagaaacacattccatacagagaacataaaagcttaaccggaacagcacgttatatgagtataaatacacatcttggaaaagagcaaagtcgacgagatgatttagaggcccttggtcatatgttcttatacttccttcgtggtagtttgccgtggcaaggcctgaaggcagatacgctaaaagaacgctatcaaaagataggagacaccaagaggtcgacacctatcgaggttctgtgtgaaaactttccagaagagtgggcaacttatcttcgttatgtaagaagattggatttctttgaaactcctgattatgattatttatacaatttattccggaatctatatgaaaagaagggttattatgacgacactgaatttgactggagtcacaagactatcccgcaacctgtcagctctgcaagtacaacggaggtttcttcgaataagccagctgctcctcattcgtcatcaaaggtatctggtgatgcatggcaaggttcaaaaccaacgtacgacagccgttttgtgcgaccaggaatcgcaggctctgttcaggtagtcagctcgacaaatggagaacttggtccttctggggatgatgcaaaccttgttgatagaaagacaggtgtacctttaaattcgcaagctgaagtggaaattgtcgacgaaacaaaatgttgctgttttttcaagaggaaacgaaagaaagccgtcacacggaggaaaaagtaaagagaaatttctgggaccatttgctgctgttcaatggaacaacttctcgagcgggtatcaacacagttcgaagaactctgtggtttggactgttaaccgtttcatggtccatatttggatccatctggtcttctaaggccataaatagaccggggtatttcaccatgttataaccctatttgggatgtcaatcctagcatcaatggggcacggcaaatgccagaaatttgtctgataagttcatttttagtattgtatctttttaattagtaatagtctgtggcctccctcgggaatggaaatcgtatatttagatctttaaagaggatcttttctgaggatttagagaactcttgcgtcagagagtgcgacttattaaatgatggaccgactgaagcagcatagcggtactgtacagatccgtagttgctgtaggcccattttgttaaagatcagttgtacgtgtataaattaagccagtatttcctgatttgtgtttcctagaattattattgtcagataatagatgtttttttgatcgacataccgggcgagtcaacaaatttatcgaactgcttgaaacattgtaaaaagagaagcatgccaccggtttaataggttttgaatccatgatctcattgaggtttcaagttaatttttgatattttttcgtacttgtaggtgcaatatttccctcgtaaataaggagtatagcaaatgtcactgacctcaatattcccaaaacaatccgaatttggccattcgcgtttttacagatttcgacattaatcatccttgttgttgctcagaacgtattgggaattacatttaaatatttcagatatcattagaaaatactacctgagctaagaaaatatgatttcaccattttatatggctggaaaatgaattaacgagtcactt

Transcript

scaffold588.g6.t2

CATGCCAAGAACTGAAACTATTAAATAGTTTATGGAAACAGGATAGAGTTTGATAGACAAATAAggttatgtcagggttatctttagagtttgacagacaaataatggtgtttcctgaggGGAAAAATCTGTACACAAATGAATTGGTTGCAATCAAGCTGGAACCCTTGAAATCCAGGGCACCACAATTGCATCTGGAATATCGTTTTTACAAAGCTCTTGGCCAGTCAGATGGCATCCCTCAAGTCTACTACTTTGGCCCTTGTGGCAAATACAACGCAATGGTTATGGAATTACTGGGTCCAAGTCTGGAAGATTTGTTTGACCTCTGTGAAAGACAGTTTACACAAAAGACAGTACTGCTCATTGCCATGCAAATGATCCGACGGATAGAATACGTGCATAACAAACATATGATATATAGAGACATAAAACCGGAGAATTTCTTGATTGGACGCAAACAGAACGGAACTGATAAAACAATATACATTATTGATTTTGGTTTAGCCAAGGAGTATATTGACCCGGAAACGAAGAAACACATTCCATACAGAGAACATAAAAGCTTAACCGGAACAGCACGTTATATGAGTATAAATACACATCTTGGAAAAGAGCAAAGTCGACGAGATGATTTAGAGGCCCTTGGTCATATGTTCTTATACTTCCTTCGTGGTAGTTTGCCGTGGCAAGGCCTGAAGGCAGATACGCTAAAAGAACGCTATCAAAAGATAGGAGACACCAAGAGGTCGACACCTATCGAGGTTCTGTGTGAAAACTTTCCAGAAGAGTGGGCAACTTATCTTCGTTATGTAAGAAGATTGGATTTCTTTGAAACTCCTGATTATGATTATTTATACAATTTATTCCGGAATCTATATGAAAAGAAGGGTTATTATGACGACACTGAATTTGACTGGAGTCACAAGACTATCCCGCAACCTGTCAGCTCTGCAAGTACAACGGAGGTTTCTTCGAATAAGCCAGCTGCTCCTCATTCGTCATCAAAGGTATCTGGTGATGCATGGCAAGGTTCAAAACCAACGTACGACAGCCGTTTTGTGCGACCAGGAATCGCAGGCTCTGTTCAGGTAGTCAGCTCGACAAATGGAGAACTTGGTCCTTCTGGGGATGATGCAAACCTTGTTGATAGAAAGACAGGTGTACCTTTAAATTCGCAAGCTGAAGTGGAAATTGTCGACGAAACAAAATGTTGCTGTTTTTTCAAGAGGAAACGAAAGAAAGCCGTCACACGGAGGAAAAAGTAAAGAGAAATTTCTGGGACCATTTGCTGCTGTTCAATGGAACAACTTCTCGAGCGGGTATCAACACAGTTCGAAGAACTCTGTGGTTTGGACTGTTAACCGTTTCATGGTCCATATTTGGATCCATCTGGTCTTCTAAGGCCATAAATAGACCGGGGTATTTCACCATGTTATAACCCTATTTGGGATGTCAATCCTAGCATCAATGGGGCACGGCAAATGCCAGAAATTTGTCTGATAAGTTCATTTTTAGTATTGTATCTTTTTAATTAGTAATAGTCTGTGGCCTCCCTCGGGAATGGAAATCGTATATTTAGATCTTTAAAGAGGATCTTTTCTGAGGATTTAGAGAACTCTTGCGTCAGAGAGTGCGACTTATTAAATGATGGACCGACTGAAGCAGCATAGCGGTACTGTACAGATCCGTAGTTGCTGTAGGCCCATTTTGTTAAAGATCAGTTGTACGTGTATAAATTAAGCCAGTATTTCCTGATTTGTGTTTCCTAGAATTATTATTGTCAGATAATAGATGTTTTTTTGATCGACATACCGGgcgagtcaacaaatttatcgaactgcttgaaacattgtaaaaagagaagcatgccaccggtttaataggttttgaatccatgatctcattgaggtttcaagttaatttttgatattttttcgtacttgtaggtgcaatatttccctcgtaaataaggagtatagcaaatgtcactgacctcaatattcccaaaacaatccgaatttggccattcgcgtttttacagatttcgacattaatcatccttgttgttgctcagaacgtattgggaattacatttaaatatttcagatatcattagaaaatactacctgagctaagaaaatatgatttcaccattttatatggctggaaaatgaattaacgagtcaCTT

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00069 all species →	Pkinase	Protein kinase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR050235 all species →	Family	Casein Kinase 1 Ser/Thr Protein Kinase	Interproscan
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR008271 all species →	Active_site	Serine/threonine-protein kinase, active site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11909 all species →	CASEIN KINASE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004674 all species →	Molecular Function	protein serine/threonine kinase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0006897 all species →	Biological Process	endocytosis	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0018105 all species →	Biological Process	peptidyl-serine phosphorylation	Interproscan
GO:0090263 all species →	Biological Process	positive regulation of canonical Wnt signaling pathway	Interproscan
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for scaffold588.g6.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.