Gene detail

Detailed information of scaffold59.g15.t2 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold59:249806...318364
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold59.g15.t2

aactggtgggtgctaaagaaagatttccgcataccaactgaggaggagatgcgtgccttggtgacaccggagcaaacatgtgcatatttaagtatgcttgctgcagaacaaagacttaaggatgctggttatggggaaaagtcattttttgcaccagatgaagaagagaatgaagttgatgcgagaaaaattgatgatgaagttcagacagcaccctggaatacgacacgtgctttcattcaagcaatcaaaggcaaatgtttgcttcaagttaatggcgttgctgatcccactggatgtggagaaggtttttcgtacatcagagtggctaataaaccaccaagcagtgctgccaagatcaattcattgtcaagatgggaagtgataaataaagtaaggacaatgtccactgaggctgcacgagctggtgaagaaggaggaatgagtaaattcgcccgtgggtcacgattcaccattgcagaacatcaagaaaaatacaaagaagaatgtcaacgaatatttgaccttcaaaacagagttctaagttccgatgctgtgctttccactgacgaagaaagtagcagcgaggaaactagtgatctggatgaacttggaaaggatttggaaagcatgttgtccaataaaaagagcaaacatgagcctgactatttgaatttctacttatactttacaggaatgagtaaattcgcccgtgggtcacgattcaccattgcagaacatcaagaaaaatacaaagaagaatgtcaacgaatatttgaccttcaaaacagagttttgagttctgatgctgtgctttccactgacgaagagagtagcagcgaggaaactagtgatcttgatgaacttggaaaagatttggaaagcatgttgtccaataaaaagagcaaacacgagctgtcacacgagaacgaagaggccgaaagaaaagagctacagaagatgcttagccaagacagacctgacaaggataagtcattacaacgtccattgagtgctgcatcttcgatatccaagaaacaattgcaagatgatgacgatgccaattccgttttaagcttggactcttcaatgcccggacgtcgacttctaattcatcgcacattcaatgaaggcggacaacaatattctcggacagaagttgtcaaaaatcaagccgtcattgactcatacctaagaattgtcacaagggacaaaaactacagacaagtttttgcaagtcaggatgaaattcataaggaaaacatgagaagagaaagaagacgaattcaagaacagctgagaagaatcaagcggaacgaggaaaaagagaaagttcgagaatcgaaaaaagtttccaaaattccgacagacaagccgcttaaaaacctcaaatgtggtgcatgtggtggcatcggccacatgaagacaaataaaatgtgtcccaaataccaagaaggagttggcacaagttctgtgcaaaccacaagaaatgatgatgaattagtgagtgaagaattgtccaattttgctactgaagatctcatcaaagtggaagggacaaagattacattgggaaaagctctacttgaagcggctgaagacatgaaacgaaaagcattgatgataaagattccaaaagattctgtcaagaagaaacgaagatcctcttctgctgctatacatccagattatcttatgcgacatcacatgagcaagaacagaagacgaacgaaccccctggtcgcccttagtctaatatttgagagcatcatatcaaggatcaaagaagttcctgagagttggccatttcatactgctgtttctacaaaggctgttcctgattattaccaaattgtaaaacaaggaatggaccttcagaccttgagagagaatgtgaagaatggtcgttaccacacgaaagaagctttccttgaacacgtcactttaatttactcaaactgcgtcttgtacaatggaatgagtcaccaattaacaaaagtggcagaagagatgcttaccactgccaacaaattgcttagtgagcgagaagttgaaatctgttcgctggagaaggaaatcaatccattactcgatagaaatgcacagattggcttttcgtggcttcttgaatcaattgtacagcagctcaaggctatcccagactcttggccatttcacattcctgtgtcttcaaagattgtccaagactattatgatattgtcaagaaccccatggatcttgaaactctgaaacagaactgccaggaacatcgctatcaactcagagaagcattcttgaatgacgtcactttgatatacaataacagtctgttgtataatggtcctgaccatccattcacacagactgcaacgaagatgctagaaaattgcaagcagcttatattcttgcatgctggtcaaatgactcaattggagatggacataaacatcgaggctaatacgatggccgctgcgcaggcagaatatgtcttttgctgctcaaagagaatcttcaatgctgcctgtttcattcactgacacaaaacaagtgatcataaaaggcgatgaagatg

Transcript

scaffold59.g15.t2

AACTGGTGGGTGCTAAAGAAAGATTTCCGCATACCAACTGAGGAGGAGATGCGTGCCTTGGTGACACCGGAGCAAACATGTGCATATTTAAGTATGCTTGCTGCAGAACAAAGACTTAAGGATGCTGGTTATGGGGAAAAGTCATTTTTTGCACCAGATGAAGAAGAGAATGAAGTTGATGCGAGAAAAATTGATGATGAAGTTCAGACAGCACCCTGGAATACGACACGTGCTTTCATTCAAGCAATCAAAGGCAAATGTTTGCTTCAAGTTAATGGCGTTGCTGATCCCACTGGATGTGGAGAAGGTTTTTCGTACATCAGAGTGGCTAATAAACCACCAAGCAGTGCTGCCAAGATCAATTCATTGTCAAGATGGGAAGTGATAAATAAAGTAAGGACAATGTCCACTGAGGCTGCACGAGCTGGTGAAGAAGGAGGAATGAGTAAATTCGCCCGTGGGTCACGATTCACCATTGCAGAACATCAAGAAAAATACAAAGAAGAATGTCAACGAATATTTGACCTTCAAAACAGAGTTCTAAGTTCCGATGCTGTGCTTTCCACTGACGAAGAAAGTAGCAGCGAGGAAACTAGTGATCTGGATGAACTTGGAAAGGATTTGGAAAGCATGTTGTCCAATAAAAAGAGCAAACATGAGCCTGACTATTTGAATTTCTACTTATACTTTACAGGAATGAGTAAATTCGCCCGTGGGTCACGATTCACCATTGCAGAACATCAAGAAAAATACAAAGAAGAATGTCAACGAATATTTGACCTTCAAAACAGAGTTTTGAGTTCTGATGCTGTGCTTTCCACTGACGAAGAGAGTAGCAGCGAGGAAACTAGTGATCTTGATGAACTTGGAAAAGATTTGGAAAGCATGTTGTCCAATAAAAAGAGCAAACACGAGCTGTCACACGAGAACGAAGAGGCCGAAAGAAAAGAGCTACAGAAGATGCTTAGCCAAGACAGACCTGACAAGGATAAGTCATTACAACGTCCATTGAGTGCTGCATCTTCGATATCCAAGAAACAATTGCAAGATGATGACGATGCCAATTCCGTTTTAAGCTTGGACTCTTCAATGCCCGGACGTCGACTTCTAATTCATCGCACATTCAATGAAGGCGGACAACAATATTCTCGGACAGAAGTTGTCAAAAATCAAGCCGTCATTGACTCATACCTAAGAATTGTCACAAGGGACAAAAACTACAGACAAGTTTTTGCAAGTCAGGATGAAATTCATAAGGAAAACATGAGAAGAGAAAGAAGACGAATTCAAGAACAGCTGAGAAGAATCAAGCGGAACGAGGAAAAAGAGAAAGTTCGAGAATCGAAAAAAGTTTCCAAAATTCCGACAGACAAGCCGCTTAAAAACCTCAAATGTGGTGCATGTGGTGGCATCGGCCACATGAAGACAAATAAAATGTGTCCCAAATACCAAGAAGGAGTTGGCACAAGTTCTGTGCAAACCACAAGAAATGATGATGAATTAGTGAGTGAAGAATTGTCCAATTTTGCTACTGAAGATCTCATCAAAGTGGAAGGGACAAAGATTACATTGGGAAAAGCTCTACTTGAAGCGGCTGAAGACATGAAACGAAAAGCATTGATGATAAAGATTCCAAAAGATTCTGTCAAGAAGAAACGAAGATCCTCTTCTGCTGCTATACATCCAGATTATCTTATGCGACATCACATGAGCAAGAACAGAAGACGAACGAACCCCCTGGTCGCCCTTAGTCTAATATTTGAGAGCATCATATCAAGGATCAAAGAAGTTCCTGAGAGTTGGCCATTTCATACTGCTGTTTCTACAAAGGCTGTTCCTGATTATTACCAAATTGTAAAACAAGGAATGGACCTTCAGACCTTGAGAGAGAATGTGAAGAATGGTCGTTACCACACGAAAGAAGCTTTCCTTGAACACGTCACTTTAATTTACTCAAACTGCGTCTTGTACAATGGAATGAGTCACCAATTAACAAAAGTGGCAGAAGAGATGCTTACCACTGCCAACAAATTGCTTAGTGAGCGAGAAGTTGAAATCTGTTCGCTGGAGAAGGAAATCAATCCATTACTCGATAGAAATGCACAGATTGGCTTTTCGTGGCTTCTTGAATCAATTGTACAGCAGCTCAAGGCTATCCCAGACTCTTGGCCATTTCACATTCCTGTGTCTTCAAAGATTGTCCAAGACTATTATGATATTGTCAAGAACCCCATGGATCTTGAAACTCTGAAACAGAACTGCCAGGAACATCGCTATCAACTCAGAGAAGCATTCTTGAATGACGTCACTTTGATATACAATAACAGTCTGTTGTATAATGGTCCTGACCATCCATTCACACAGACTGCAACGAAGATGCTAGAAAATTGCAAGCAGCTTATATTCTTGCATGCTGGTCAAATGACTCAATTGGAGATGGACATAAACATCGAGGCTAATACGATGGCCGCTGCGCAGGCAGAATATGTCTTTTGCTGCTCAAAGAGAATCTTCAATGCTGCCTGTTTCATTCACTGACACAAAACAAGTGATCATAAAAGGCGATGAAGATG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00439 all species →	Bromodomain	Bromodomain	Domain	Interproscan
PF15288 all species →	zf-CCHC_6	Zinc knuckle	Domain	Interproscan
PF12157 all species →	DUF3591	Protein of unknown function (DUF3591)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001487 all species →	Domain	Bromodomain	Interproscan
IPR040240 all species →	Family	Transcription initiation factor TFIID subunit 1	Interproscan
IPR036427 all species →	Homologous_superfamily	Bromodomain-like superfamily	Interproscan
IPR041670 all species →	Domain	Zinc knuckle	Interproscan
IPR022591 all species →	Domain	Transcription initiation factor TFIID subunit 1, histone acetyltransferase domain	Interproscan
IPR018359 all species →	Conserved_site	Bromodomain, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13900 all species →	TRANSCRIPTION INITIATION FACTOR TFIID	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0004402 all species →	Molecular Function	histone acetyltransferase activity	Interproscan
GO:0005669 all species →	Cellular Component	transcription factor TFIID complex	Interproscan
GO:0006366 all species →	Biological Process	transcription by RNA polymerase II	Interproscan
GO:0016251 all species →	Molecular Function	RNA polymerase II general transcription initiation factor activity	Interproscan
GO:0017025 all species →	Molecular Function	TBP-class protein binding	Interproscan
GO:0051123 all species →	Biological Process	RNA polymerase II preinitiation complex assembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for scaffold59.g15.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.