Gene detail

Detailed information of scaffold59.g23.t1 in Morbakka virulenta

Genomic Location: scaffold59:1345198...1374025
NR annotation: XP_018412969.1, PREDICTED: excitatory amino acid transporter 2 [Nanorana parkeri]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

scaffold59.g23.t1

aacagcacatgaccttgcagttggggcctgtttaggtttcccagtttaggtgacccattctgcttaaaacggtctccgtagcgaggcttcacccaagaccttaggactaagtaacaaagtaagaactcggtactcagcccttcagaacaagagatccacgctcacgacacctagatatgatgctcccccactactcccgcccgttaaacagaaatgcgtgatgtgtcagccctttcgggacatgcacaaccggttaagAAATGTCTTCCCGGATAATATAGTCGGAGCATGCATTAGCCAGGGTAAAACGGAAATTTTGATAATTAAAGAAAAAATAAGTGAAAAAAACGAGACGGTGGATTTATCAAGGATGAACGCCACAGTACTGAAAAGTTATTTAGCGAAAAACGATGTAAAGTCATATATCAATAAAACAACAAACAAAAGGGTCAACTATACTACCATTACAAAATATAAAACTTACAAAAAACCAGGACCTACCAAAACAGCTATGAAAGCTAATTTTCTTGGCATCATTTCATTTGCTTTGGTATTTGGAGCAGTTCTTGGAAGAATTGGTCCGGCAGGAAAGACCTTATTTGATGCTGTCAATGGAATCAATGAAGTAGTTCTGATTCTTGTCACTGGTGTTATGTGGTTACATGAACTGAAGAAATTACAGTACCATTACAGTCAAAGAATGctttacgggaagtcgaaatcagagttagaggccctggtgaacacagtcagaatattcacaagtgatatagggatgaaatttggattgcataaatgtgccacgttggtaatgagaagaggaaagaatattgaagatgaaggaatcgggatgccagatgtacagttgatagaagatcttggggaggagtcttataagtatcttggagtactggaggcggataagatgaaaatggaagacatgaaagagaaagtcagaaaggagtatttcagaaggataagaaaagtgttggagtcaaaactgaatggaggtaacgtaatcaaagcgatgaacacatgggcagtggcagcaatgcggtacacagctgggatactcgattggactgttgatgagatacaggggatggatagaaaaacaagaaagctgatgatgatcaaccgagcactcctcccaaaagcagatgtcaatagactTGCCGCAACCTTACCCATCACCTTTCGATGCCTGGAGGAGCACAACCATATTGACCCAAGAGTAACGAGGTTTGTGTTGCCAATTGGTGCAACTATTAATATGGATGGAACAGCTCTGTATGAAGCTGTAGCGGCAATTTTTATTGCACAGGCTTCAGGATTTGAACTTACTGCGGGCGATTATGTCGCAATAAGTCTCACGTCAACATTGGCATCACTTGGAGCTGCTGCAGTTCCTAGTGCAGGACTGGTCACTATGTTGATTGTTTTGGATACAGTAGGTCTCCCGACGGATTATATTGGTGTCTTTTATTCTATCGACTGGTTTCTCGACCGCATGAGGACAGCAATGAATGTTCTTGGTGATTCTATCGGAGCAGGAATTGTACATCATTTGTCAAAAAAAGAACTTCACTCCCAGCCTAAGGTGGAACAAGTCAAGGGTATTGATAACCCTTTAAAAATCCAGGAAGGAGAAACGAGCTGTTTGTAGTGGATTTAAACTAAAATAGACTCCTGTAAAATAGATGTTTAAGCAAAATGTGCTAATTATCATAGTAAGTATTTCAAGCCCTAAACCATAGTCTAAATATTGAACTGAAGAAAGAGTATAATCCTGGACTATTTGCAGAAGAGAAAGGAGGAAAAACACTGTATTTGCTATGAGGAGAAATCTGAAGGTATAACATGTTGGACGATTTGATTTGGTCACATTGGGGTGGAACAATATCGATTTTGGGATAACGTTCAAGTAATGTACCCTTTATTTTTAATCTTGTTATTGGAGCTGTTTGACTTTTTGATTGGCCTGGTTTAAATGACGTGTTTATTGGACTACTAGTTTGGGGGCGTTTAATAGTGAGCCAGAACAAAGGAAATCACAAGAC

Protein

Uniprot

Uniprot term	Description
P46411	Excitatory amino acid transporter 1 OS=Bos taurus OX=9913 GN=SLC1A3 PE=2 SV=1
P43003	Excitatory amino acid transporter 1 OS=Homo sapiens OX=9606 GN=SLC1A3 PE=1 SV=1
O57321	Excitatory amino acid transporter 1 OS=Ambystoma tigrinum OX=8305 GN=SLC1A3 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00375	SDF	Sodium:dicarboxylate symporter family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018107	Conserved_site	Sodium:dicarboxylate symporter, conserved site	Interproscan
IPR036458	Homologous_superfamily	Sodium:dicarboxylate symporter superfamily	Interproscan
IPR050746	Family	Dicarboxylate/Amino Acid:Cation Symporter	Interproscan
IPR001991	Family	Sodium:dicarboxylate symporter	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11958	SODIUM/DICARBOXYLATE SYMPORTER-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0015293	Molecular Function	symporter activity	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0005313	Molecular Function	L-glutamate transmembrane transporter activity	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0015175	Molecular Function	neutral L-amino acid transmembrane transporter activity	Interproscan
GO:0015501	Molecular Function	glutamate:sodium symporter activity	Interproscan
GO:0015813	Biological Process	L-glutamate transmembrane transport	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K08994	yneE, BEST; ion channel-forming bestrophin family protein	-	Transporters	ko02000	deepkoala