Gene detail

Detailed information of scaffold592.g3.t2 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold592:44088...50174
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold592.g3.t2

aataaaactgaaggttctttctcatgtggcccaagaacctttcgcagctcaagacgatctagtcgctattcaagacatcataatacaccagattgacgattgatccattccaaattgatccaaaataaagacttaaggttagagaagtgaacaagaccaacgaaagacacagaaactcaagatgcaagcaatcaaatgcgttgttgttggagatggagctgttggtaaaacttgtctgttgattagttacaccacaaatgcattcccaggagaatacatcccaacggtgtttgataactactctgccaatgttatggtggatggaaaaccaatcaacttaggactgtgggatactgctggtcaagaggattatgacagacttcgacctctttcttacccacaaacggatgtattcttgatatgtttctcgttgacaagtccagcatcatatgaaaatgtcagagcaaagatttttatatatttaataagtcaagaggattatgacagacttcgacctctttcttacccacaaacggatgtattcttgatatgtttctcgttgacaagtccagcatcatatgaaaatgtcagagcaaagtggtatccagaagtaagccatcactgtccacaaacaccaatcatcttagttgggacgaaactggatttgcgtgacgacaaagaaaccctagagaaattgaaggaaaagaaattggtgccatgctcgacagcaggtggtctgcaaatgtcaaaagaaattggtggagttaaatacctcgagtgttctgctttgacgcagaagggtttgaaacaagtttttgatgaggcgatcagagctgtcctttgccccaaaaaagttgctaaaaagaaaaagggatgcacactcttgtaaagcgattacaatgtttgcatgatgggtcttgatgagtgtaccctctgataacatcaacatatgaacgttgttcaaagaactggtcttacatcggacaagtctatatatttgtatgatactaaattcgtattctatctaattatttctattcttattataatcaattatctttacaagcatcaaattttcttcagtgaagatctttataattttgtcagcatcaagttacgttttcctaagcttctgttttgtaccaagtgctaagtcaattaaataccataaaaaggtcctctggaaatcttttgtttttgcttgccaagttatgtagagaagcaaggcagtctgcacgctccagtgtattcaagaattactagtgaatggacagcccaagcccaaatttgaaacgagcaaaacttaattgttacacccacattttcttctgtagatatgggaataccttaactttaatacattagcattattaggcagctagtctgttagttgttgttgagttttgttttcaaagaatagctccaatcagtcacttgtagatttaaaatttgataattgaactctttgctttttcctatttctcttttctccccaaataatggtgtttgtttgtcacgctctaatctgccgtagcccctggctgggctcttagacctcatttacactgtacctgcaaagctatggatccgtaacgaaactttaatggatgaaagcctctcgtttacaccgtttttgccgatcaataacacatttattcctaccatccatacaaaaaattcgttctggagcagtgttaacaggcctgaacatgaacaactttgcaacggatcgaaacaatactgttacagtgtaaacattgtctcatgcgccacagctccaagtgctcaagactcctatagggtcaaggctcttgagctcctccattagaacactcgcaaatacaccgcaggggttgttgttcagaagatctgatgacgatttcaaatttagtttgaagtttaaaagagaaaataaaaattgaaaagaactaaagaccaaacacttaagaatgtatacgaacaatttgtgctaggggtgttaatttctcttcaaacatggcgttcttacgaaagcttcgtatcagttttcaattttcatcgtgccagtcgaggtgccagtagctgtcctcgttgctagaaatatttgattgttttcgtaaacgaataagaaaaaactttcaggacaatggaaactgaccaatcttggtgctaccaaaatatcatttgggacatcggttagtaactcaaaattcattttattgtatcaaaactcttctcatttgtgacaggtcactggaacatgtactagccactggaaccactggaaggtagcctgcgtgcagacaatacctaactgaggaaaaggtatagtctgcgcaacgccgctcaatttcgtgtattgtatgcgtcagctatttatttcaatggcatttgaatgaccctttctccttggcgtctgtttattgtctgcagtagggtagttaaaattccagagtattgtgttgctaatgaagtttgcctagagaa

Transcript

scaffold592.g3.t2

AATAAAACTGAAGGTTCTTTCTCATGTGGCCCAAGAACCTTTCGCAGCTCAAGACGATCTAGTCGCTATTCAAGACATCATAATACACCAGATTGACGATTGATCCATTCCAAATTGATCCAAAATAAAGACTTAAGGTTAGAGAAGTGAACAAGACCAACGAAAGACACAGAAACTCAAGATGCAAGCAATCAAATGCGTTGTTGTTGGAGATGGAGCTGTTGGTAAAACTTGTCTGTTGATTAGTTACACCACAAATGCATTCCCAGGAGAATACATCCCAACGGTGTTTGATAACTACTCTGCCAATGTTATGGTGGATGGAAAACCAATCAACTTAGGACTGTGGGATACTGCTGGTCAAGAGGATTATGACAGACTTCGACCTCTTTCTTACCCACAAACGGATGTATTCTTGATATGTTTCTCGTTGACAAGTCCAGCATCATATGAAAATGTCAGAGCAAAGATTTTTATATATTTAATAAGTCAAGAGGATTATGACAGACTTCGACCTCTTTCTTACCCACAAACGGATGTATTCTTGATATGTTTCTCGTTGACAAGTCCAGCATCATATGAAAATGTCAGAGCAAAGTGGTATCCAGAAGTAAGCCATCACTGTCCACAAACACCAATCATCTTAGTTGGGACGAAACTGGATTTGCGTGACGACAAAGAAACCCTAGAGAAATTGAAGGAAAAGAAATTGGTGCCATGCTCGACAGCAGGTGGTCTGCAAATGTCAAAAGAAATTGGTGGAGTTAAATACCTCGAGTGTTCTGCTTTGACGCAGAAGGGTTTGAAACAAGTTTTTGATGAGGCGATCAGAGCTGTCCTTTGCCCCAAAAAAGTTGCTAAAAAGAAAAAGGGATGCACACTCTTGTAAAGCGATTACAATGTTTGCATGATGGGTCTTGATGAGTGTACCCTCTGATAACATCAACATATGAACGTTGTTCAAAGAACTGGTCTTACATCGGACAAGTCTATATATTTGTATGATACTAAATTCGTATTCTATCTAATTATTTCTATTCTTATTATAATCAATTATCTTTACAAGCATCAAATTTTCTTCAGTGAAGATCTTTATAATTTTGTCAGCATCAAGTTACGTTTTCCTAAGCTTCTGTTTTGTACCAAGTGCTAAGTCAATTAAATACCATAAAAAGGTCCTCTGGAAATCTTTTGTTTTTGCTTGCCAAGTTATGTAGAGAAGCAAGGCAGTCTGCACGCTCCAGTGTATTCAAGAATTACTAGTGAATGGACAGCCCAAGCCCAAATTTGAAACGAGCAAAACTTAATTGTTACACCCACATTTTCTTCTGTAGATATGGGAATACCTTAACTTTAATACATTAGCATTATTAGGCAGCTAGTCTGTTAGTTGTTGTTGAGTTTTGTTTTCAAAGAATAGCTCCAATCAGTCACTTGTAGATTTAAAATTTGATAATTGAACTCTTTGCTTTTTCCTATTTCTCTTTTCTCCCCAAATAATGGTGTTTGTTTGTCACGCTCTAATCTGCCGTAGCCCCTGGCTGGGCTCTTagacctcatttacactgtacctgcaaagctatggatccgtaacgaaactttaatggatgaaagcctctcgtttacaccgtttttgccgatcaataacacatttattcctaccatccatacaaaaaattcgttctggagcagtgttaacaggcctgaacatgaacaactttgcaacggatcgaaacaatactgttacagtgtaaACATTGTCTCATGCGCCACAGCTCCAAGTGCTCAAGACTCCTATAGGGTCAAGGCTCTTGAGCTCCTCCATTAGAACACTCGCAAATACACCGCAGGGGTTGTTGTTCAGAAGATCTGATGACGATTTCAAATTTAGTTTGAAGTTTAAAAGAGAAAATAAAAATTGAAAAGAACTAAAGACCAAACACTTAAGAATGTATACGAACAATTTGTGCTAGGGGTGTTAATTTCTCTTCAAACATGGCGTTCTTACGAAAGCTTCGTATCAGTTTTCAATTTTCATCGTGCCAGTCGAGGTGCCAGTAGCTGTCCTCGTTGCTAGAAATATTTGATTGTTTTCGTAAACGAATAAGAAAAAACTTTCAGGACAATGGAAACTGACCAATCTTGGTGCTACCAAAATATCATTTGGGACATCGGTTAGTAACTCAAAATTCATTTTATTGTATCAAAACTCTTCTCATTTGTGACAGGTCACTGGAACATGTACTAGCCACTGGAACCACTGGAAGGtagcctgcgtgcagacaatacctaactgaggaaaaggtatagtctgcgcaacgccgctcaatttcgtgtattgtatgcgtcagctatttatttcaatggcatttgaatgaccctttctccttggcgtctgtttattgtctgcagtagggtagttaaaattccagagtattgtgttgctaatgaagtttgcctagagaa

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00071 all species →	Ras	Ras family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003578 all species →	Family	Small GTPase Rho	Interproscan
IPR005225 all species →	Domain	Small GTP-binding protein domain	Interproscan
IPR001806 all species →	Family	Small GTPase	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24072 all species →	RHO FAMILY GTPASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003924 all species →	Molecular Function	GTPase activity	Interproscan
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan
GO:0005856 all species →	Cellular Component	cytoskeleton	Interproscan
GO:0007163 all species →	Biological Process	establishment or maintenance of cell polarity	Interproscan
GO:0007264 all species →	Biological Process	small GTPase-mediated signal transduction	Interproscan
GO:0008360 all species →	Biological Process	regulation of cell shape	Interproscan
GO:0019901 all species →	Molecular Function	protein kinase binding	Interproscan
GO:0030865 all species →	Biological Process	cortical cytoskeleton organization	Interproscan
GO:0031410 all species →	Cellular Component	cytoplasmic vesicle	Interproscan
GO:0032956 all species →	Biological Process	regulation of actin cytoskeleton organization	Interproscan
GO:0042995 all species →	Cellular Component	cell projection	Interproscan
GO:0043652 all species →	Biological Process	engulfment of apoptotic cell	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K04392	RAC1; Ras-related C3 botulinum toxin substrate 1	-	GTP-binding proteins	ko04031	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.