Gene detail

Detailed information of scaffold593.g3.t4 in Morbakka virulenta

Genomic Location: scaffold593:51703...63015
NR annotation: CAH1253717.1, TOLLIP [Branchiostoma lanceolatum]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

scaffold593.g3.t4

ttaatggttagtgcactgcacagtaaccaagagttccgggttcgattccccgagctgtcgaggagaatttagaactttgcgaaaagaaaaagccattggttggcgtcaggaagggcatccggccaaaaaattcctcactgccaaatcaaagtccctgtgaagggcaccgtctgagccccaattgctggggaaaaatgacGCCATTACCTGAAGGCATTAATCAGATATATGTCGAGATCTTTGACGAGTCTACATTTACGGTCGATGAAAGGATAGCTTGGGGTATGATCACGATCAAAGATGAAATTTTTGCCGGGGAAACAGTTGATGATTGGTATACGTTGAGTGGAAAGCAAGGGGAAGACAAAGAGGGGATGATTAACATAATTTTTCACTATCGGGAAGGGCCAGTTGCAGTTGCCCCAGGTGTTGTACCACAACCAATGGTAATGTATCCAGAGCCAATGATGTACACATATCCAGCAGTTGTGACATCCACAACAATAACGCAACCCCAGCAAAGTGTTCAACAACCACAACAACTGCCCACGCCTGCCCCTCAACAAGCTGCCGTCTCTGAATCAGATATAAATGCCCTAAGGGATATGTTTCCTGCTATTGACAAAGAAATAATCCAATCGGTCCTAGCAGGATGTGGTGGAAATGTTGATGCAGCGGTTGGTAACCTATTGAGTATGAGCGAAGGACAGTGAGCGTTCGATTATTTGCGAGTGTGAGAAAGTTTATTTTTCATTGCTTACGTTGTACATCATTTGTTTTTAAAGGGAATGCTTAATAATTAATTTTCTGTTTGCTTTTGTTAATTTGATAAAACTATGTAATGTTTTTTCACACTTAAATATAGTCCGTAATCAGTCGTTTAAATAGGGTTTAAGTTCCAGATTTTGATCGCTGCCAAGCTTCAACTGTTGATTATTTTTTTAGTACTGGTAGTAGCTTTGGTATTCAATAGAGATGCAGAAAGTATTCGTTGGAACTTTTACAGTTGGGTATGAAGTATACACACCGGGAAGCGTGTTACCTTTCAAATTTATCCTATCCCTAAAGGCTATTACGATCCCTCCTGATTGTTTATTTTTTCAAGTTCAAGGGTTTTTCGCAGTTTTCAGTACGACTGCCAAGTTATTTGTGTGCTAACATATGCATATCTTCTACCCCTTGTTTATTTTGCTCCCGTTTTACTTCACACCCAAGAGTATATAGGTCTCGGCCTTTTGCAATAAATGTGTAATTAGCCGATCTCTGTCTTTACATGAAATTATGCTGACCAGTGATGGAGTATTGTTTTATAGATACAGCCGATTGTTTTTGTTGACATTTCTGTTACCCGTAATGTTTCAACTGTTATATTTTATAATTTCAGTATCTATGTGATTGACATTTCCTTTGTATTGTACGTGCATTATTGTATATTGAAATACCGAGTGTAGGATATTATTTTCTCAGTGATTGATTCAATTATATTGTGATTTAGAATGAAATCGTTGTCATATCATTTAATACAGGATGATTCCCGTCATGTCATTTAATACAGGATGATTCCCGTCATATCATTTAATACAGGATGATTCCCGTCATATCATTTAATACAGGATGATTCCCGTCATATCATTTAATACAGGATGATTCCCGTCATATCATTTAATACAGGATGATTCCCGTCATATCATTTAATACAGGATGATTCCCGTCATATCATTTAATACGGGATGATTCCCGTCATATCATTTAATACAGGATGATTCCCCCCTACAGAAAACCGGAGCCCCAAAATATTATTAAATCCTATAAAGGTTTAAGCTTTCTGGGATTAATCTGTAGTCTATTTATGATCATTCCCCAAAGTTTAAGGTTTCCTGGTCGCTTTGCTTAAAAGAAATGTTCTttccaaaatttgcttcaaatggcctctgcagcactggaggtacacttgtttatgttacgccatatcgtcaattactcagacttctttctctttgaggattccccgattttcgcagtgactgccgctatcagttcagcaatcgtttgttggttgttcatgtaaaaatttacctgagatatgccgaacaaattgaaatctgggaggttcaaggccagtgaatcctttggcgacgcagcgtcgcacttccttctgatcagTGTCTCCAGAAAAACCTCTTCCAAGTAGATGAGATTCCTCTGCCTCTTCCCAGTGATGCCTAAAACTTCCTCAGTAGTACTACTTAGCGCCCTGTATTAAGAGCTTGAGCTCTCTCATTTTCGTCGTCGAACAAATATACTTCNTCATT

Protein

Uniprot

Gene family

Uniprot term	Description
Q6INE3	Toll-interacting protein B OS=Xenopus laevis OX=8355 GN=tollip-b PE=2 SV=1
Q7ZV43	Toll-interacting protein OS=Danio rerio OX=7955 GN=tollip PE=2 SV=1
Q2LGB5	Toll-interacting protein OS=Bos taurus OX=9913 GN=TOLLIP PE=2 SV=1

Gene family	Subfamily
Ubiquitin Family	UBD\|Alpha-Helix\|CUE

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02845	CUE	CUE domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003892	Domain	Ubiquitin system component CUE	Interproscan
IPR035892	Homologous_superfamily	C2 domain superfamily	Interproscan
IPR009060	Homologous_superfamily	UBA-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16461	TOLL-INTERACTING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0043130	Molecular Function	ubiquitin binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006511	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan
GO:0031624	Molecular Function	ubiquitin conjugating enzyme binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan