Genomic Location: scaffold6:2754640...2786863
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita · all data for this species · gene families
| CDS |
| scaffold6.g167.t1 |
| Transcript |
| scaffold6.g167.t1 |
| Protein |
| scaffold6.g167.t1 |
scaffold6.g167.t1. This gene does have a gene model — the search simply returned no hit.| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR028745 all species → | Family | A-kinase anchor protein 9/Pericentrin | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR44981 all species → | PERICENTRIN-LIKE PROTEIN, ISOFORM F | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0007165 all species → | Biological Process | signal transduction | Interproscan |
| GO:0060090 all species → | Molecular Function | molecular adaptor activity | Interproscan |
scaffold6.g167.t1.Transcript abundance of scaffold6.g167.t1 across 22 RNA-seq samples of Aurelia aurita. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| complete polyp | 3 | 3 | 58.22 | 76.55 | |
| polyp not induced | 2 | 2 | 53.38 | 57.14 | |
| polyp endoderm from body column | 1 | 1 | 26.27 | 26.27 | |
| jellyfish bell edge | 1 | 1 | 48.72 | 48.72 | |
| strobila non-segmented part | 1 | 1 | 102.00 | 102.00 | |
| polyp 12h induction with 5M2MI +20C | 1 | 1 | 92.79 | 92.79 | |
| polyp 24h induction with 5M2MI | 1 | 1 | 96.14 | 96.14 | |
| strobila segments | 1 | 1 | 92.68 | 92.68 | |
| strobila heads | 1 | 1 | 80.46 | 80.46 | |
| polyp 24h induction with 5M2MI +20C | 1 | 1 | 66.14 | 66.14 | |
| jellyfish ropalia | 1 | 1 | 61.04 | 61.04 | |
| polyp head region | 1 | 1 | 93.96 | 93.96 | |
| polyp 20h induction with 5M2MI +20C | 1 | 1 | 117.38 | 117.38 | |
| complete strobila | 1 | 1 | 71.13 | 71.13 | |
| 13 jellyfish ropalia | 1 | 1 | 64.12 | 64.12 | |
| complete juvenile jellyfish | 1 | 1 | 117.18 | 117.18 | |
| polyp ectoderm from body column | 1 | 1 | 99.10 | 99.10 | |
| jellyfish bell edge without ropalia | 1 | 1 | 59.77 | 59.77 | |
| 3 juvenile jellyfish (~7mm in diameter) | 1 | 1 | 49.38 | 49.38 |
Source: CnidoSite RNA-seq expression matrices (AAURI1_TPM,
StringTie quantification over 22 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
