Gene detail

Detailed information of scaffold60.g29.t4 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold60:375577...399154
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold60.g29.t4

cactgagaaacgtgaatgtgatttgaataaggacgcgagctgaacacgaaacaggtcttgaaacaggaaaacaagctattatatgcagctaacctgaagatatttagttaaaggaaagctgcaagtaccgagaattgatcaagtactgtggataaggaatgagaaaagtgttttatacgcttggaaagaagtgatggcggacaagcgaaaattacaaggtgagatcgacagatgcttgaaaaaagtgaatgaaggagtggaggcttttgatgatatttggcaaaaggtaggccactatgctgcatcaaatagcaatcaaaaggaaaaatatgaagcagatctgaaaaaagaaataaagaagctgcagaggctaagagaccaaatcaagacatgggctgcatcaaatgatatcaaagataagaggcctttattagacgcaagaaagttgattgagacacaaatggaaaggtttaaagttgttgaaagggaaacaaagacaaaagcatattcaaaagaaggtttaggtcaagccaacaaaattgatccaattactaaagaaaaagaagagtgtagggaatggctaaatgaatcgatagataggatcaagctacagattgaccagatggaaagtgaaattgaatctatgcaatctggaaacaagaagaaaaagattgatcgagagaaaactgggaagattgaagcacaccgggaaagaatagaaaagcatcggtttcacatcaaaagcttagagctgatactgaggttactggacaatgaaagccttgaagttgatagggtgaataaattaaaagaagacgtcgattattatatcgaaaattgtcaggaacctgatttcgttgatgatgagggtttatatgaagaattcgatttggagtcagacttagcattatcggcagaattagtgcgatcgccgtcagaaacgaacagagatgatgatgatattgatataccttcacctgggtcatctgtgagctcctcctcaggttatatgattggaatggccaattcaccttcatccaagtcaatcactaatgctaattcacctcgaaagtcaaaatcctcctccacatcttcaagcaatggatcttcaataaatatagtgaacaataattctacaacaataacgacgacttctgttaccacgacgacatcatctaatactcggtccaagtctttctcaacaccaacaacaactatggctaccatagcaacaacgataacctcgattgcaccttcatcctctcctcctccatcctctagtctcgttttagaaagcacaacaactatatcaacagttgctcctgctttaacagctttaactacgaatcataattctgttaataataaagtttcaagcatctccccgtcaagcaaagctgtaggccaacccaccgtcactccatatgcggtagcagctggtgccaatcaaccctcgctcatttcagttcagaaatcttcaggaaaccaacaggtctgcttgcccagtccaccgttacaaactcaaccttcacttagtcaaatttcaacttcgtctgtcctaactaatcatgtagacagccatcaatacccagctttatcaacaaccagaagtaacgaattaaaactttctgatggattaaacagccttgtgcaatcagaaatactatccgtatcacaatcatcaagccccgtttcattacccccgtcatcaacgaaccaatcagaaagcatatcagacacaactgttacgtcatcattaacagatgttacgacactaccagctgtatctacaatatcaagtattcaaagtggagtctcgataccaagtagtttaacctcgatatcaagtagcctatcttcatcactttcaatggtacgctattttagttattcgttattttatccttcacttattcgttcattcatttattcattcattcattcatagcataggttccaaatctttaaaaaggctggtgtaaaatcgagtgacgtatttctttgaactgaatgacttcaaagaaacttcagctatttctctataattctatcgttggacttttctgaaatctttaatattttcagagttagaatgtttttcttctttttcaagaattcaacaaaaatttaaaaaaaat

Transcript

scaffold60.g29.t4

CACTGAGAAACGTGAATGTGATTTGAATAAGGACGCGAGCTGAACACGAAACAGGTCTTGAAACAGGAAAACAAGCTATTATATGCAGCTAACCTGAAGATATTTAGTTAAAGGAAAGCTGCAAGTACCGAGAATTGATCAAGTACTGTGGATAAGGAATGAGAAAAGTGTTTTATACGCTTGGAAAGAAGTGATGGCGGACAAGCGAAAATTACAAGGTGAGATCGACAGATGCTTGAAAAAAGTGAATGAAGGAGTGGAGGCTTTTGATGATATTTGGCAAAAGGTAGGCCACTATGCTGCATCAAATAGCAATCAAAAGGAAAAATATGAAGCAGATCTGAAAAAAGAAATAAAGAAGCTGCAGAGGCTAAGAGACCAAATCAAGACATGGGCTGCATCAAATGATATCAAAGATAAGAGGCCTTTATTAGACGCAAGAAAGTTGATTGAGACACAAATGGAAAGGTTTAAAGTTGTTGAAAGGGAAACAAAGACAAAAGCATATTCAAAAGAAGGTTTAGGTCAAGCCAACAAAATTGATCCAATTACTAAAGAAAAAGAAGAGTGTAGGGAATGGCTAAATGAATCGATAGATAGGATCAAGCTACAGATTGACCAGATGGAAAGTGAAATTGAATCTATGCAATCTGGAAACAAGAAGAAAAAGATTGATCGAGAGAAAACTGGGAAGATTGAAGCACACCGGGAAAGAATAGAAAAGCATCGGTTTCACATCAAAAGCTTAGAGCTGATACTGAGGTTACTGGACAATGAAAGCCTTGAAGTTGATAGGGTGAATAAATTAAAAGAAGACGTCGATTATTATATCGAAAATTGTCAGGAACCTGATTTCGTTGATGATGAGGGTTTATATGAAGAATTCGATTTGGAGTCAGACTTAGCATTATCGGCAGAATTAGTGCGATCGCCGTCAGAAACGAACAGAGATGATGATGATATTGATATACCTTCACCTGGGTCATCTGTGAGCTCCTCCTCAGGTTATATGATTGGAATGGCCAATTCACCTTCATCCAAGTCAATCACTAATGCTAATTCACCTCGAAAGTCAAAATCCTCCTCCACATCTTCAAGCAATGGATCTTCAATAAATATAGTGAACAATAATTCTACAACAATAACGACGACTTCTGTTACCACGACGACATCATCTAATACTCGGTCCAAGTCTTTCTCAACACCAACAACAACTATGGCTACCATAGCAACAACGATAACCTCGATTGCACCTTCATCCTCTCCTCCTCCATCCTCTAGTCTCGTTTTAGAAAGCACAACAACTATATCAACAGTTGCTCCTGCTTTAACAGCTTTAACTACGAATCATAATTCTGTTAATAATAAAGTTTCAAGCATCTCCCCGTCAAGCAAAGCTGTAGGCCAACCCACCGTCACTCCATATGCGGTAGCAGCTGGTGCCAATCAACCCTCGCTCATTTCAGTTCAGAAATCTTCAGGAAACCAACAGGTCTGCTTGCCCAGTCCACCGTTACAAACTCAACCTTCACTTAGTCAAATTTCAACTTCGTCTGTCCTAACTAATCATGTAGACAGCCATCAATACCCAGCTTTATCAACAACCAGAAGTAACGAATTAAAACTTTCTGATGGATTAAACAGCCTTGTGCAATCAGAAATACTATCCGTATCACAATCATCAAGCCCCGTTTCATTACCCCCGTCATCAACGAACCAATCAGAAAGCATATCAGACACAACTGTTACGTCATCATTAACAGATGTTACGACACTACCAGCTGTATCTACAATATCAAGTATTCAAAGTGGAGTCTCGATACCAAGTAGTTTAACCTCGATATCAAGTAGCCTATCTTCATCACTTTCAATGGTACGCTATTTTAGTTATTCGTTATTTTATCCTTCACTTattcgttcattcatttattcattcattcattcatagcataggttccaaatctttaaaaaggctggtgtaaaatcgagtgacgtatttctttgaactgaatgacttcaaagaaacttcagctatttctctataattctatcgttggacttttctgaaatctttaatattttcagagttagaatgtttttcttctttttcaagaattcaacaaaaatttaaaaaaaat

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04065 all species →	Not3	Not1 N-terminal domain, CCR4-Not complex component	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR040168 all species →	Family	Not2/Not3/Not5	Interproscan
IPR007207 all species →	Domain	CCR4-Not complex component, Not N-terminal domain	Interproscan
IPR012270 all species →	Family	CCR4-NOT complex, subunit 3/ 5	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23326 all species →	CCR4 NOT-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000289 all species →	Biological Process	nuclear-transcribed mRNA poly(A) tail shortening	Interproscan
GO:0000932 all species →	Cellular Component	P-body	Interproscan
GO:0030015 all species →	Cellular Component	CCR4-NOT core complex	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for scaffold60.g29.t4.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.