Gene detail

Detailed information of scaffold60.g30.t4 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold60:408920...420894
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold60.g30.t4

cgagaagcgtgaagaacaaagaagagtttgtatttttaggccgccacaacagcgtctttcaaactgcaagaaaagctttggattattggccaagatcgatgttatttggcccaaagatgaatttcatatcaaagagctttcattatcatcgaaagagatgtgttctgctgttcttaatcatatctttgatgggtttggttgagctgacattcggttcggtacatactgatgaagcttcgcatggtacacttattgtcccagaaactcttttatttgtttctacccttgatggaacccttcatgcagtgaagaaaaatactggggatgttagatggacaatgaaagaaaatcctattctcaaatcaccactgaaagcaaaccctggtggtacctttctgccagatccaaaagatggcagtctttatgggttttttggtggaaatatcaaggaaagtttgaggaaattgccattcacaatacctgagcttgtcaaggcatcaccatgcagaagcacagatggtactctttatgttggtcgcaagcaagatgtatggtttgcaattgatccagatacaggagaaaagagacgcaaattgacaatggatgggattgggaacatgtgcccacctattggacgttctagtgctcccatgtacattggaaggacagaatattctgtcattatgtttgatggtataaccggagaaaaacgatggaatgtaactttctttgattatgcatcacagccagctaaagagaatgaacatgatcagctccattttgcatcatgctctgatggtcaagttgttacgatggatcgtctaactggtcaaattatgtgggaaacaagcttcggatctccagttgcaagtatttatcaatggattccagagggcctacaaaaggttccggtcagctatgttgcgaaggaaacacttcagctcatcatacaagcaagtacgtctggagaaaatggtagcaatcagtatataggcacatctggtgaacttgttttgaaaccaacactcttcattggcaagcatcaaggagggttgtacgctgtgccttcgatggttgatgagaaatcagtcattgttgatccaaagatcctgttaattgccggaccaagaaacatggctggtgaagaacacttcgatgggaattctaaaaaggagaaacaacaaaatgccattccagttttaattggccaccacaccgttccccccaaatcaaaaactgaaatatcaccgggattctttatcacgcacctcaaagcaaccgacacaacacatgcgcaaatgcataaagaacacagttcgaatgtcaacaaaggcaaagaagaaggaggaagaaagaaaagcactgtcagtcaaagacatttagcaaaattatttgaagctgtgaaaaacaaccaaagcctattttatactgttatagcttcagttgggatacctgtagcattgttgcttatgttttactttgagcgtaaactgccatcgatatcatctcagttatctgtgcattcaaatgagagctatgcagggtcacgtgaagctagccagcaatcagttgcaggttcagaatactcttcgtattcctcgggagacagactgctggaagaagaagatgggatggtaaggattggcaaaataatatttgatccaaaatcaatccttggacgggggtgtgaaggaacagtcgtttacagaggtaaatttgactgcagagatgtggctgttaagaggatacttcctgaatgtgtcagttttgcagaccgagaggttgcacttttaagagaatcagacgaacatccaaatgtcatcagatatttttgcatggtaagtctggttatatttatgtcttttccaattctttcctaattcctgtctttcagcgataaaagtcacaaactactgagtgtctcgaaaaagcatttgaatagtttccgcagaggagctagatttcgaatctcgaattatattttaatggtgttnctaatttaagtgcaaatatagcacgtgcagttgttgccatcccagcaacgtattccttttttgaatttcgctagagaagttgtcaattttagatcatcattaagggtattccacagtagactccctctaaaggatagggaatttattccgtagcgccgagaactcactggggggagcttgcataattccttggtacgaagattataggaaacatcttttttacaaaaaattcccacatgtaccctgggttgagatggttgattgatttgtaaatttcaaccatgagattttgcaagttctttacatgtattttcttcgtttcacccctctctaaaagttcctcaagtgtggattcatagtcactatataaagttcgcagtgcacgcttgtgtgtcctattaatttcattattggcaactttgctacagaataaccagatcagagggca

Transcript

scaffold60.g30.t4

CGAGAAGCGTGAAGAACAAAGAAGAGTTTGTATTTTTAGGCCGCCACAACAGCGTCTTTCAAACTGCAAGAAAAGCTTTGGATTATTGGCCAAGATCGATGTTATTTGGCCCAAAGATGAATTTCATATCAAAGAGCTTTCATTATCATCGAAAGAGATGTGTTCTGCTGTTCTTAATCATATCTTTGATGGGTTTGGTTGAGCTGACATTCGGTTCGGTACATACTGATGAAGCTTCGCATGGTACACTTATTGTCCCAGAAACTCTTTTATTTGTTTCTACCCTTGATGGAACCCTTCATGCAGTGAAGAAAAATACTGGGGATGTTAGATGGACAATGAAAGAAAATCCTATTCTCAAATCACCACTGAAAGCAAACCCTGGTGGTACCTTTCTGCCAGATCCAAAAGATGGCAGTCTTTATGGGTTTTTTGGTGGAAATATCAAGGAAAGTTTGAGGAAATTGCCATTCACAATACCTGAGCTTGTCAAGGCATCACCATGCAGAAGCACAGATGGTACTCTTTATGTTGGTCGCAAGCAAGATGTATGGTTTGCAATTGATCCAGATACAGGAGAAAAGAGACGCAAATTGACAATGGATGGGATTGGGAACATGTGCCCACCTATTGGACGTTCTAGTGCTCCCATGTACATTGGAAGGACAGAATATTCTGTCATTATGTTTGATGGTATAACCGGAGAAAAACGATGGAATGTAACTTTCTTTGATTATGCATCACAGCCAGCTAAAGAGAATGAACATGATCAGCTCCATTTTGCATCATGCTCTGATGGTCAAGTTGTTACGATGGATCGTCTAACTGGTCAAATTATGTGGGAAACAAGCTTCGGATCTCCAGTTGCAAGTATTTATCAATGGATTCCAGAGGGCCTACAAAAGGTTCCGGTCAGCTATGTTGCGAAGGAAACACTTCAGCTCATCATACAAGCAAGTACGTCTGGAGAAAATGGTAGCAATCAGTATATAGGCACATCTGGTGAACTTGTTTTGAAACCAACACTCTTCATTGGCAAGCATCAAGGAGGGTTGTACGCTGTGCCTTCGATGGTTGATGAGAAATCAGTCATTGTTGATCCAAAGATCCTGTTAATTGCCGGACCAAGAAACATGGCTGGTGAAGAACACTTCGATGGGAATTCTAAAAAGGAGAAACAACAAAATGCCATTCCAGTTTTAATTGGCCACCACACCGTTCCCCCCAAATCAAAAACTGAAATATCACCGGGATTCTTTATCACGCACCTCAAAGCAACCGACACAACACATGCGCAAATGCATAAAGAACACAGTTCGAATGTCAACAAAGGCAAAGAAGAAGGAGGAAGAAAGAAAAGCACTGTCAGTCAAAGACATTTAGCAAAATTATTTGAAGCTGTGAAAAACAACCAAAGCCTATTTTATACTGTTATAGCTTCAGTTGGGATACCTGTAGCATTGTTGCTTATGTTTTACTTTGAGCGTAAACTGCCATCGATATCATCTCAGTTATCTGTGCATTCAAATGAGAGCTATGCAGGGTCACGTGAAGCTAGCCAGCAATCAGTTGCAGGTTCAGAATACTCTTCGTATTCCTCGGGAGACAGACTGCTGGAAGAAGAAGATGGGATGGTAAGGATTGGCAAAATAATATTTGATCCAAAATCAATCCTTGGACGGGGGTGTGAAGGAACAGTCGTTTACAGAGGTAAATTTGACTGCAGAGATGTGGCTGTTAAGAGGATACTTCCTGAATGTGTCAGTTTTGCAGACCGAGAGGTTGCACTTTTAAGAGAATCAGACGAACATCCAAATGTCATCAGATATTTTTGCATGGTAAGTCTGGTTATATTTATGTCTTTTCCAATTCTTTCCTAATTCCTGTCTTTCAGCGATAAAAGTCACAAACTACTGAGTGTCTCGAAAAAGCATTTGAATAGTTTCCGCAGAGGAGCTAGATTTCGAATCTCGAATTATATTTTAATGGTGTTNctaatttaagtgcaaatatagcacgtgcagttgttgccatcccagcaacgtattccttttttgaatttcgctagagaagttgtcaattttagatcatcattaagggtattccacagtagactccctctaaaggatagggaatttattccgtagcgccgagaactcactggggggagcttgcataattccttggtacgaagattataggaaacatcttttttacaaaaaattcccacatgtaccctgggttgagatggttgattgatttgtaaatttcaaccatgagattttgcaagttctttacatgtattttcttcgtttcacccctctctaaaagttcctcaagtgtggattcatagtcactatataaagttcgcagtgcacgcttgtgtgtcctattaatttcattattggcaactttgctacagaataaccagatcagagggca

Protein

Pfam domain

No Pfam domain signature was detected for scaffold60.g30.t4. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR045133 all species →	Family	Serine/threonine-protein kinase/endoribonuclease IRE1/2-like	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR018391 all species →	Repeat	Pyrrolo-quinoline quinone beta-propeller repeat	Interproscan
IPR011047 all species →	Homologous_superfamily	Quinoprotein alcohol dehydrogenase-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13954 all species →	IRE1-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0004521 all species →	Molecular Function	RNA endonuclease activity	Interproscan
GO:0004674 all species →	Molecular Function	protein serine/threonine kinase activity	Interproscan
GO:0030968 all species →	Biological Process	endoplasmic reticulum unfolded protein response	Interproscan
GO:0036498 all species →	Biological Process	IRE1-mediated unfolded protein response	Interproscan
GO:0051082 all species →	Molecular Function	unfolded protein binding	Interproscan
GO:0070059 all species →	Biological Process	intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress	Interproscan
GO:1990604 all species →	Cellular Component	IRE1-TRAF2-ASK1 complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for scaffold60.g30.t4.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.