Gene detail

Detailed information of scaffold602.g12.t2 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold602:157107...170024
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold602.g12.t2

aatttataaatgaaatgaaattgggcagttctaaattttccgtacgatgatccctgaatagcacatggtcacgctgtatgctgtattcgtatatttgcaccatcttttttgccgcgggaaatgggccctagttattagtttggcccactagtcaaatttccttaaaagatgtattttacattgtaatacctcattctaattactatacgacactacaggtacgatactatgggggagcgaaagacaatgactaggcctaccccatgaccaatatctaaaaacacgaagcgttaaactgtgtacgaccacactacaaacatttataaactaaggcatactagattctgtttcgtgccagatgtcaggtcggggttgcgatggatattgaagacatgaagaatataagatgatttagtggcctgggcaatctaaatatagtctgttgtattccattgtatttgataattagcaaataaattgacaaatgaagcagttggccatcgtttgttctatttttaaacttgacgccataaatctgtcatctcagcaaccaccgcaacaaaaattagctaaacagaaaagatcacactcaaactccacacacgacagcaatcaaaagaaacgatagagttgcagggagacaacagaatgacaacagcaccaccaccatactctggacccgatgcaggcgcatatccacctggagaacccgcgaaagtagctcctggggctggagcggtacagcaaccaggatatggagctactcaacctggctacccccctgctggtggtgctcctggctacccccctgctggtggtgctcctggttactcccctgctggtggtgctcctggttatcctgcccaatctggaccaacaacaacaacagtggtgatgcaacaaccggttgtggtgcagaggatggtcatgggccaataccctgtactaataacatgcccacaatgccatgcacaagtaactacaagcgttacttatcagaatggtttgatggtatggttgatggttggtggtatgctccttgtgggattatggtttggatgctgcttgattccattctgcatggacagtattaaagattgcacacatgcttgccccaattgccatgccatcgttggccattacaaacgaatttgaaaagaaacgttcctgtgaacgatccttgtgcaacaccagcttgagtacttttattttgctgaaattatgtatccagttttgtgacggggctttattttctgtgattttttatacatcaaaaacatattcatatggggtagataattcttatgatacacttgcctctccccacatggagtagatacagtaattcttatgatacataagcaggttagaatcattacatacattatgcagtagaccgtcgttatatcacatttgtgaccaaagcaaatgtcttctgcttgaaaagctatagtttaaaaccctttttaaatactgtccatttgaaaacactacgaattggagaccgagtgagtcacaaagaacgcacgccatttgaaaggttatcattccctgaataccaaagcaataaaatgaagcagtgagatatgttgatatgttattgaatagctgacatgtacaattaatcttatcccagtaatgtaacatgattattaaaggagacttcatcttacaaaaaggatgatatgtgatgggtaattgtcattgctacgaggcaagaaagtcaactaaatgagatcactggtttagccgttttcatcaagacttcttgaaggatccttcacaagaaatctcccataactccagaaaggggaggccgatttaagtcggataaattatcatatctaattcaacatatcagctgttaaacctacaacatttaccaatggcatttaccaaggtcattactttaatatgcagggaacggtattctttcaatcgccttgcggttttttttttactcaccagttaaatcaaaagtgaaatttcttcagtgattttatatatatactgctatgtagtcaaaagtaaaaagtagtgcaagtacagaatcttcgacgagacgaaagatgtaagattttaattttcttaccacgatttttcaagcaaagatgacatttctgggtttcagcataactcatatatattcctatcatatgcaggcgtcttttgacatggagtagaattactgaacagaaatgccacacgtattttgtatcctaccattttccgagataacgttctggtcagattgtaccgaatgacagctgtgtgggagaacacatcttttatagaaactagtaatggattgccgatgatttaaggaaaacagtatagctacaccctcgcattgatagaatcaaagcacactgcctttgggacactcagaaactttaacctatcagaactctgcagaaacataatcaaatacgaccaacaattacattttcggaatttactcttgaatttacttttgaaggtgttgtggcgcagtggtgtaatcctctgactttgcagccagaacagtcaggcggagtgggttcgatacccggtaggaccccaccacttgagcgtcatgacaaggggtcgtggactcgattaggtctgctctatttctgcgatcccagcgcttggcgctgaaaaannn

Transcript

scaffold602.g12.t2

aatttataaatgaaatgaaattgggcagttctaaattttccgtacgatgatccctgaatagcacatggtcacgctgtatgctgtattcgtatatttgcaccatcttttttgccgcgggaaatgggccctagttattagtttggcccactagtcaaatttccttaaaagatgtattttacattgtaatacctcattctaattactatacgacactacaggtacgatactatgggggagcgaaagacaatgactaggcctaccccatgaccaatatctaaaaacacgaagcgttaaactgtgtacgaccacactacaaacatttataaactaaggcatactagattctgtttcgtgccagatgtcaggtcggggttgcgatggatattgaagacatgaagaatataagatgatttagtggcctgggcaatctaaatatagtctgttgtattccattgtatttgataattagcaaataaattgacaaatgaagcagttggccatcgtttgttctatttttaaacttgacgccataaatctgtcatCTCAGCAACCACCGCAACAAAAATTAGCTAAACAGAAAAGATCACACTCAAACTCCACACACGACAGCAATCAAAAGAAACGATAGAGTTGCAGGGAGACAACAGAATGACAACAGCACCACCACCATACTCTGGACCCGATGCAGGCGCATATCCACCTGGAGAACCCGCGAAAGTAGCTCCTGGGGCTGGAGCGGTACAGCAACCAGGATATGGAGCTACTCAACCTGGCTACCCCCCTGCTGGTGGTGCTCCTGGCTACCCCCCTGCTGGTGGTGCTCCTGGTTACTCCCCTGCTGGTGGTGCTCCTGGTTATCCTGCCCAATCTGGACCAACAACAACAACAGTGGTGATGCAACAACCGGTTGTGGTGCAGAGGATGGTCATGGGCCAATACCCTGTACTAATAACATGCCCACAATGCCATGCACAAGTAACTACAAGCGTTACTTATCAGAATGGTTTGATGGTATGGTTGATGGTTGGTGGTATGCTCCTTGTGGGATTATGGTTTGGATGCTGCTTGATTCCATTCTGCATGGACAGTATTAAAGATTGCACACATGCTTGCCCCAATTGCCATGCCATCGTTGGCCATTACAAACGAATTTGAAAAGAAACGTTCCTGTGAACGATCCTTGTGCAACACCAGCTTGAGTACTTTTATTTTGCTGAAATTATGTATCCAGTTTTGTGACGGGGCTTTATTTTCTGTGATTTTTTATACATCAAAAACATATTCATATGGGGTAGATAATTCTTATGATACACTTGCCTCTCCCCACATGGAGTAGATACAGTAATTCTTATGATACATAAGCAGGTTAGAATCATTACATACATTATGCAGTAGACCGTCGTTATATCACATTTGTGACCAAAGCAAATGTCTTCTGCTTGAAAAGCTATAGTTTAAAACCCTTTTTAAATACTGTCCATTTGAAAACACTACGAATTGGAGaccgagtgagtcacaaagaacgcacgccatttgaaaggttatcattccctgaataccaaagcaataaaatgaagcagtgagatatgttgatatgttattgaatagctgacatgtacaattaatcttaTCCCAGTAATGTAACATGAttattaaaggagacttcatcttacaaaaaggatgatatgtgatgggtaattgtcattgctacgaggcaagaaagtcaactaaatgagatcactggtttagccgttttcatcaagacttcttgaaggatccttcacaagaaatctcccataactccagaaaggggaggccgatttaagtcggataaattatcatatctaattcaacatatcagctgttaaacctacaacatttaccaatggcatttaccaaggtcattactttaatatgcagggaacggtattctttcaatcgccttgcggttttttttttactcaccAGTTAAATCAAAAGTGAAATTTCTTCAGTGATTTTATATATATACTGCTATGTAGTCAAAAGTAAAAAGTAGTGCAAGTACAGAATCTTCGACGAGACGAAAGATGTAAGATTTTAATTTTCTTACCACGATTTTTCAAGCAAAGATGACATTTCTGGGTTTCAGCATAACTCATATATATTCCTATCATATGCAGGCGTCTTTTGACATGGAGTAGAATTACTGAACAGAAATGCCACACGTATTTTGTATCCTACCATTTTCCGAGATAACGTTCTGGTCAGATTGTACCGAATGACAGCTGTGTGGGAGAACACATCTTTTATAGAAACTAGTAATGGATTGCCGATGATTTAAGGAAAACAGTATAGCTACACCCTCGCATTGATAGAATCAAAGCACACTGCCTTTGGGACACTCAGAAACTTTAACCTATCAGAACTCTGCAGAAACATAATCAAATACGACCAACAATTACATTTTCGGAATTTACTCttgaatttacttttgaaggtgttgtggcgcagtggtgtaatcctctgactttgcagccagaacagtcaggcggagtgggttcgatacccggtaggaccccaccacttgagcgtcatgacaaggggtcgtggactcgattaggtctgctctatttctgcgatcccagcgcttggcgctgaaaaANNN

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10601 all species →	zf-LITAF-like	LITAF-like zinc ribbon domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006629 all species →	Domain	LPS-induced tumour necrosis factor alpha factor	Interproscan
IPR037519 all species →	Family	LITAF domain containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23292 all species →	LIPOPOLYSACCHARIDE-INDUCED TUMOR NECROSIS FACTOR-ALPHA FACTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K19363	LITAF; lipopolysaccharide-induced tumor necrosis factor-alpha factor	-	Lysosome	ko04142	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.