Gene detail

Detailed information of scaffold61.g37.t2 in Morbakka virulenta

Genomic Location: scaffold61:1121686...1138704
NR annotation: XP_031549417.1, cytoplasmic tRNA 2-thiolation protein 1-like [Actinia tenebrosa]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

scaffold61.g37.t2

ATTGAATCTTTAGATATCTGTATTTGTTACATTCATTGTTTTTTTATCAAGGAATCTGACGTCGATGCAATGTAACTCATAGACAAAGAAATGGTTGTTATAATCAGCTTAGAATTTAGTGGAAAATTTGGTTAGACTCATCGGAGAACTCGTCTAATGCTGAAGAAAGCACAGTTACTTGTTAGGAATGCCATTCAGATGCATCTCTTGCTGCAAGAGAGCAGTATTAAAGCGCCCCAAGACGGGTGATGCACTCTGCAAAGAGTGCTTTTTTCAAGTATTGGAAAAAGAAGTTCATGCTACCATCACAGAAAATAAACTATTTAAACCTGGAGATGTAGTAGCAATTGGTGCATCTGGTGGAAAAGACTCAACTGTTCTTGCATACCTTATGAAAACCCTAAATGAAAGACATGGGTATGGACTACAGTTAATACTGCTCCCAATAGATGAGGGGATTACTGGCTACAGGGATGATTCACTTGAGACTGTGAAAAGGAATAAAGTGCAGTATGAGCTTCCACTCAAAATTGTATCCTATGAGGATCTCTATGGATGGACAATGGATGACATTGTAAAAAAAATTGGTTTAAAAAATAATTGTACATTCTGTGGTGTGTTCCGGAGACAGGCACTGGACCGTGGTGCAATGCTGGTTGGTGCAAATAAAGTCGTTACAGGTCACAATGCAGATGATGTTGCAGAGACAATACTTATGAATGGTAAGTAAAGTTTTGTGTTTAACAATGGGAAAGTATTTGCCTTGTGCCTCAGAGAAAGCCAGGTTTCTTTTAGTTTTTTGAACTTGCATCGCGCTTGTTCTTCGATATACTAtattattattattatttacacattttctttgaattgttttcttgaaatccagcaccgggtcactaccagtgacctagggtgaaggaagttttggtaataaaattaaatagagagagctcgtctaagcaaatgagcagttccgttcaaaacaattttctgtacttcttgcaaagaaggttcccctgggatttgtttcaaaaagctatctgttcctttcttgatgaggcctagtgcacccacaataacaggtattgtctttgtttttagatgccacatcttttccacctctatctctaaatccttatatttagcaagcttttcaaaagtcttagcagagacattcctgtccgaagggacactcatgtctatcaaaaggcaagtattctctttcctgttcttgatgacaatgtctgggcggtttgcttgtatggtacgatccgtttgtatgggaaaatcccacaaaattgtaatatccttactttcagttacaggtgctggatgatgttcataccagctagcttgcgttttaatggaaaagtgttgacaaattttccaatgtaggtattggccaactcgatcatgacggtttttatattcgtttggtgttagaaccgagcagccagagacaaggtggtcaatagtttcggttttgtcctcacagaacctacattcttgattggcaccgttatgtaaaacattagcttggtagttcctggtgaacagactctgatcttgggcagcaagaataaagccctctgtttcccctttcagtccggcgctcctcagccactgatgggttgcttctttgtctacatcagcattgttgcttcgggctgcgaactgtccgtggagaggtttttcttgccacctagattcgagtctgtccaatccagttttctttgctttttgcttggtttttttagctgcaactgttgggtttagtgtgttatcaacctcaagatcaacacctagttctcggaaaaacttctctgactctttaaggattgaatgcaatcttttggaattttcatgcctataaacgtgttgaagcatccaatcattggttaaatcaagatattgtgagaggccaataatggatgttttataagagagctcaaactggatcatccccctacctcctgtattcctagggaggtacaaacgatcaacgtctgatttagggtgatgcatcaaattacaagtcagttgcttccttatctttgtatctagcctcttcaaatcacttagattccaatttataataccaaagctgtaagttactaccggcactgctagagaatttattgctgatattctattttttgagttcaattcagttttcatgatggacctcactctccttatgcattctttccttatcttttccttcattttcgagtgctgtatgccgtcaccttcacttacacctagatatttataactgccttcttgttctagatcttgaatcacc

Protein

Uniprot

Uniprot term	Description
Q5FW05	Cytoplasmic tRNA 2-thiolation protein 1 OS=Xenopus tropicalis OX=8364 GN=ctu1 PE=2 SV=1
Q803X1	Cytoplasmic tRNA 2-thiolation protein 1 OS=Danio rerio OX=7955 GN=ctu1 PE=2 SV=1
Q05AW7	Cytoplasmic tRNA 2-thiolation protein 1 OS=Xenopus laevis OX=8355 GN=ctu1 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01171	ATP_bind_3	PP-loop family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014729	Homologous_superfamily	Rossmann-like alpha/beta/alpha sandwich fold	Interproscan
IPR011063	Domain	tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal	Interproscan
IPR020554	Conserved_site	Uncharacterised protein family UPF0021, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11807	ATPASES OF THE PP SUPERFAMILY-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000049	Molecular Function	tRNA binding	Interproscan
GO:0002143	Biological Process	tRNA wobble position uridine thiolation	Interproscan
GO:0002144	Cellular Component	cytosolic tRNA wobble base thiouridylase complex	Interproscan
GO:0005739	Cellular Component	mitochondrion	Interproscan