Gene detail

Detailed information of scaffold616.g4.t1 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold616:17213...38544
NR annotation: no NCBI-NR hit recorded
Species abbreviation AAURI2 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold616.g4.t1

ccacccaaaggaattgcgacgatcaatgttaaaggcagtctgtcatgcatctgattggctgtaacaaagtcagagctcaacacaacggatgtctttgtgaatctgtgtatctataacaaagtaggactaatctttgtcactttctacggtcgtagagattcggtaggatcagcagccattcaattctcttatattctttgtattgtccctatcacccaatcagatgcgtgaccgactgcctttaaagcaccacttaggcccacacgaaaatcgtcccaagcccttgattctacgggcccttaccaattcatactcgtttctgcgaattcatacacgttcttgcaaaacgagtttcttgtagaataatcttactattctttcttctacgatgcaaatctctctggggataaggttgaagggctttggagatcgaaattcacaagggtcctaagatctttgagtccggtttttacagtccatcatcctttaggactttcctaaattctttcaaagcgataaactctttcgttcttttgtttttctcttaggcctgagcaattcccagctcatatgtgtacacttcaacaactgaacatcatctggccttgaaaattacggaaaagatgtaaagtaacttcttcgactttgttgcaattggtttatcaatgcaagtcgaccacgcagatgacatttaaaattggatgtgattaaagtttatgaagatatcggcaataaaagtttatacgaatattcacaagttggaacacgttacactctattttctctcgatttgagttggataaacaacattgccgacaatggactacacagaagattatcatgagacgttcgatcttctagaagatctcactgaggaggagcttttggtgttgaatcaagagttcgacccagagaacaatcttctgccgattcacgaacgtgttaactatgaatgcgaaaagcaaccttcacgattctacaacagaactcagttgacgaaacatcttgaaacagcgcttaactttggtggacttgtacggccttcaacacatcctaaaccaatggaggaaaagataaaggtgaaaccacaactgaagatgaatgatctcatcacaactgagcaaattgagcaaattcgagctggaaaaaagcccattggtactggtatactgagaccaactttggtacggcccaattacccacagaaatcattttcaatcgacgaagatgacgcagatgaggaatatgtagatgtggacgccatggtcaaggcgatgcgaagcaaaggagaagatatctctatcatcgtttgtaataatcaaccatacatggacccagaagttcttgaagagatcgcagctcatctgatggctaataagaatatacgtcacctctcattggctaattgcaatttctctgatagctgcgttgagaaatcattttcaatcgacgaagatgacgcagatgaggaatatgtagatgtggacgccatggtcaaggcgatgcgaagcaaaggagaagatatctctatcatcgtttgtaataatcaaccatacatggacccagaagttcttgaagagatcgcagctcatctgatggctaataagaatatacgtcacctctcattggctaattgcaatttctctgatagctgcgttgagctctgcacaagctcaaaaaagtagtcatacaaagtttatttgcttggatacggcattctaactggcatcgtcgctcaaccggcaaagtgtaaacgccgaatacggctattcctcgatatatcaaagaatgaaatcctactaatagaaattgaggggaccaacatttcattccagtttatcatgattgatcactaatctctgattgatcacttggatagtcatgattgatcaatagctcaatcattttggagcattgatttggagcagagattgaaggaatctaagggtgcaagagaacgagagattgagagaatcttagggtggacagggtggacgggtggacgacttgcacgtggtacgtcatgggaaagaaaacgagagattgaga

Transcript

scaffold616.g4.t1

CCACCCAAAGGAATTGCGACGATCAATGttaaaggcagtctgtcatgcatctgattggctgtaacaaagtcagagctcaacacaacggatgtctttgtgaatctgtgtatctataacaaagtaggactaatctttgtcactttctacggtcgtagagattcggtaggatcagcagccattcaattctcttatattctttgtattgtccctatcacccaatcagatgcgtgaccgactgcctttaaAGCACCACTTAGGCCCACACGAAAATCGTCCCAAGCCCTTGATTCTACGGGCCCTTACCAATTCATACTCGTTTCTGCGAATTCATACACGTTCTTGCAAAACGAGTTTCTTGTAGAATAATCTTACTATTCTTTCTTCTACGATGCAAATCTCTCTGGGGATAAGGTTGAAGGGCTTTGGAGATCGAAATTCACAAGGGTCCTAAGATCTTTGAGTCCGGTTTTTACAGTCCATCATCCTTTAGGACTTTCCTAAATTCTTTCAAAGCGATAAACTCTTTCGTTCTTTTGTTTTTCTCTTAGGCCTGAGCAATTCCCAGCTCATATGTGTACACTTCAACAACTGAACATCATCTGGCCTTGAAAATTACGGAAAAGATGTAAAGTAACTTCTTCGACTTTGTTGCAATTGGTTTATCAATGCAAGTCGACCACGCAGATGACATTTAAAATTGGATGTGATTAAAGTTTATGAAGATATCGGCAATAAAAGTTTATACGAATATTCACAAGTTGGAACACGTTACACTCTATTTTCTCTCGATTTGAGTTGGATAAACAACATTGCCGACAATGGACTACACAGAAGATTATCATGAGACGTTCGATCTTCTAGAAGATCTCACTGAGGAGGAGCTTTTGGTGTTGAATCAAGAGTTCGACCCAGAGAACAATCTTCTGCCGATTCACGAACGTGTTAACTATGAATGCGAAAAGCAACCTTCACGATTCTACAACAGAACTCAGTTGACGAAACATCTTGAAACAGCGCTTAACTTTGGTGGACTTGTACGGCCTTCAACACATCCTAAACCAATGGAGGAAAAGATAAAGGTGAAACCACAACTGAAGATGAATGATCTCATCACAACTGAGCAAATTGAGCAAATTCGAGCTGGAAAAAAGCCCATTGGTACTGGTATACTGAGACCAACTTTGGTACGGCCCAATTACCCACAGAAATCATTTTCAATCGACGAAGATGACGCAGATGAGGAATATGTAGATGTGGACGCCATGGTCAAGGCGATGCGAAGCAAAGGAGAAGATATCTCTATCATCGTTTGTAATAATCAACCATACATGGACCCAGAAGTTCTTGAAGAGATCGCAGCTCATCTGATGGCTAATAAGAATATACGTCACCTCTCATTGGCTAATTGCAATTTCTCTGATAGCTGCGTTGAGAAATCATTTTCAATCGACGAAGATGACGCAGATGAGGAATATGTAGATGTGGACGCCATGGTCAAGGCGATGCGAAGCAAAGGAGAAGATATCTCTATCATCGTTTGTAATAATCAACCATACATGGACCCAGAAGTTCTTGAAGAGATCGCAGCTCATCTGATGGCTAATAAGAATATACGTCACCTCTCATTGGCTAATTGCAATTTCTCTGATAGCTGCGTTGAGCTCTGCACAAGCTCAAAAAAGTAGTCATACAAAGTTTATTTGCTTGGATACGGCATTCTAACTGGCATCGTCGCTCAACCGGCAAAGTGTAAACGCCGAATACGGCTATTCCTCGATATATCAAAGAATGAAATCCTACTAATAGAAATTGAGGGGACCAACATTTCATTCCAGTTTATCATGATTGATCACTAATCTCTGATTGATCACTTGGATAGTCATGATTGATCAATAGCTCAATCATTTTGGAGCATTGATTTGGAGCAGAGATTGAAGGAATCTAAGGGTGCAAGAGAACGAGAGATTGAGAGAATCTTAGGGTGGACAGGGTGGACGGGTGGACGACTTGCACGTGGTACGTCATGGGAAAGAAAACGAGAGATTGAGA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03250 all species →	Tropomodulin	Tropomodulin	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004934 all species →	Family	Tropomodulin	Interproscan
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10901 all species →	TROPOMODULIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005523 all species →	Molecular Function	tropomyosin binding	Interproscan
GO:0005856 all species →	Cellular Component	cytoskeleton	Interproscan
GO:0007015 all species →	Biological Process	actin filament organization	Interproscan
GO:0030016 all species →	Cellular Component	myofibril	Interproscan
GO:0030239 all species →	Biological Process	myofibril assembly	Interproscan
GO:0051694 all species →	Biological Process	pointed-end actin filament capping	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for scaffold616.g4.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.