Gene detail

Detailed information of scaffold62.g60.t1 in Morbakka virulenta

Genomic Location: scaffold62:2260600...2312512
NR annotation: RMX51679.1, hypothetical protein pdam_00008100 [Pocillopora damicornis]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

scaffold62.g60.t1

GTTTCATCTGAATCTGGCAATTTTCTACGTTTCTACTTGATTTTAGCCAAATGATGATTGAAATTCAAAGACACAGCCTAGCGATGTGATAAAAGCTGAAAATGATAAGGTTTATCTGTGAAGTTGCAATGGCTTTAAGTAACTATTGAGATTAAACATCGTTACGCACAATGCACAATGAAGTGTACATTACCTGGAAGACACATTAAGCTATTCGGGAAGGCAGTTCATTGCCTGTCAAAGATTGGAGATGAACTATATATTGAAGGCCTGCATGATGGGCTTACCATTCGAACTGTCAATTCTTCGCGATCGGCTTATGGATGCTTTCATTTTTTTGAGTCATTCTTCATGGAGTACGCAAGTGGAATGAATGGAGATGGAAATACTGGTCAAAGTGTCAAAGTAAAAATAGCAATGAAGTCATGCCTTGGTGTTTTTAAATCATTATCAAATTTGGAGAAAGTGGTTGACTATTGCAACATCAACTATGATGAAGCAGAATCAAGGCTTGTTTTTATGTTATCATGTAAACATGGTATAGTGAAAACACATAATCTTACTTTTCAAGACTGTGAATCTCTGCAAGCGATTTTTTCGAAGGAATTGTGTCAAAATGTAATCAGGTCTTCTGCCAGGGTGCTGCAAGACTGTGTTGCTAATTTTCCAGTTCAGTGTGAGGAAATTTCAGTCAGTGTTACTCCACAATTTATCAAATTCAAAAACTACATTGAAGATGAAAGTGAATTGTCAAAAGTTGTAAATACAGAGATGACTTTGTCACCGGAAGAATTTGAAGATTGTAGTATTGGAATTGACACAGAAATTACGTTTTGCTTGAAAGAACTTAGGGCTATCCTTGGTTTTTCAGAAGCTGTTAATCAACCAATCAATGTCCATTTTGAAACTAGTGGGAGGCCAGTTTCATTTTCCTTGGACGGAGATGCAGCTTTTAAGGCAGATTTTGTATTAGCAAGCCTAATAGATACAACGGATTCACAAATGACGCAACAATCACAATGCCACACAACAGCAGGAGTTGGAATTTTAGATCGATCAAAATCTAATCATGGAGTTTCGAAGCAGTCAAAAGAGAGTGTAAAAGCACCTGGTCAGTCTCCGAAAATTAACAATATGGGAAGACCCAAAGTTAGGGAAGGAAATGGTGTCGAGAAACGAAATCAAGATAAAGAAAAGAAAGATTTACAAACTACGGATCTGACTAACGACACTCGTAATAAGAAAACCAAAACCGGGGAAGAATCGGAGACAACTGTGCATAACAGAGAAGTTGATCAGGTGGCAGATGACTTCTTTACGGACTCCTTTCCATATCGAGATGTGTTTCAGCAGAGGTCAGCGAATAAAAAAGCAAATGCACCAGAAGACATAGATATTCAAAATCAATCACCGCCTGTGTCCAGTGGGCGAAGTGGTAGACCATTATCAACTCCTCGATCATCTCAAAGTGGACCTAATATCTCCAAAATCAGTATGCCAAACCTTGGTGACAGTTTGCCGTTCGAAGGAAGTATGGAAAACAGAAACGAGCCAGATAGTGTTCCAGGAACACCACCTGCGAAAAGGTATAAGTCAATGCTATTTGGAGAAGATTCAGAGCAAAATGAGGATGAACAGATGGTGTTGGCAGTGGACACAGACGATGAAGATGACTGATTCAATCCTAAGTAAAATAATCAGACTTGTGTCAAAGCAAAGGGTCTTAACGTCAATATAAAGAACATCTGATAACAAGCGAAAGCATAACGCATATCGATCCCAAAGCACTCTTCTATTTAATTTTCTCATTCATACTCTTGGATTAAAAAAAATATTTTCCTTGTTTCAAGAAGAAATAGATTTTTACGTTCTTATTTTTTATTATTTAAATAAGAGCTATTGTATATAGATTGTTATGGTTCCCCGGTTCTGGTAACGACCAGACCTACCTCCTTTAGTAGAATTAGTTGTGATTAACTGCAAAACGAAGTTATGATCTTAATTCCCAAACTTAATGAAGAAAATAAAATTAC

Protein

Uniprot

Uniprot term	Description
Q9Z0F6	Cell cycle checkpoint control protein RAD9A OS=Mus musculus OX=10090 GN=Rad9a PE=1 SV=1
Q99638	Cell cycle checkpoint control protein RAD9A OS=Homo sapiens OX=9606 GN=RAD9A PE=1 SV=1
Q4R5X9	Cell cycle checkpoint control protein RAD9A OS=Macaca fascicularis OX=9541 GN=RAD9A PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04139	Rad9	Rad9	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007268	Family	Rad9/Ddc1	Interproscan
IPR026584	Family	Rad9	Interproscan
IPR046938	Homologous_superfamily	DNA clamp superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15237	DNA REPAIR PROTEIN RAD9	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000077	Biological Process	DNA damage checkpoint signaling	Interproscan
GO:0030896	Cellular Component	checkpoint clamp complex	Interproscan
GO:0006281	Biological Process	DNA repair	Interproscan
GO:0000076	Biological Process	DNA replication checkpoint signaling	Interproscan
GO:0031573	Biological Process	mitotic intra-S DNA damage checkpoint signaling	Interproscan
GO:0071479	Biological Process	cellular response to ionizing radiation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K10995	RAD9B; cell cycle checkpoint control protein RAD9B	-	DNA repair and recombination proteins	ko03400	deepkoala