Gene detail

Detailed information of scaffold620.g3.t3 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold620:58376...111500
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold620.g3.t3

aacatggaaatacgtctagttcaccggatcgtcttggcaataaaactataaatgataaatggattcaggaagagcttttcaagattcacttggtttttatgaagaaaaatacaagaaaagtgggattccatatttgcattctccgttgccgccaagaatggctgaagatccgaggtacaaactcaggaataatctgacaactgagaaaccgtcagacgagaaagaaacagtccgagtaaaatattatatacacgagaaaacattcagagaaagattaaagacactgtttatcacaaatcagaaatcaacaatcttactttttttgactacatgttatgatatgatatcccttcttgattttagttggacattgttatgggttgatagacatctggcaatatggggaatacaggctgccatcgcaatatttggtatgctggattcaatactttctggatacttgtcatacaagggtacactgctaggagcaatgaacagatacatgatactggagatcgtcactggtattccatttatcatttcggctgccatcgcaatatttggtatgctggattcaatactttctggatacttgtcatacaagggtaccctgctaggagcaatgaacagatacatgatactggagatcgtcactggtattccatttatcatttcgattttctggtcagatctgagaaacctttttgctctaacatttcttcattgttggattgccaaggacagtgcacatacggtattaaatgatctgcatcgccatagacttcagaatcgatcagctgtgactcaaaaagtcatcttggtggctcttagtgttatctgtctcatcttcacaagcatatgtggcttacagcaactagaacgtgcccatggcaactggacgatattccaagcattatggtttgttgtggttacattcagcactgtgggctatggtgataccgtaccacgtgacacgatttcaagagcatgggtcatcatcatgatcatcttggctttattggttcttcctgttgagttggaagaattggccttcttacttgtatccaaacaaaaagaaggtggtgtttacagtacagcatacggagcagatagacatgttgttgtttgttcaacagccttaagagcaagtacaatgatcgacttcttgaatgagttttatgctgatcctaagatggaggatgtccacgttgtccttctgtcaccagctgagctagaaagtaagctgcggatcctgttacaagtccctctgtgggcgcaaagagtgacttatctcaaggggtcagcattgaatgaccaagatcttattagagcaagagtgatcgatgctgaagcttgtttcatattaacggacagagggaatccggacgttgatgcacgggaccatcaatctatcatgcgaacatgggcaatccaagactttgcacctgcgacgcccttatatgtacaaattcataaaccagagaacaaatttcacgtcagcttcgcagaacatgtcgtgtgtgaagatgagatcaaaaatgcattgttggcatcaaactgcgtctgtcccggcatttcaacattggttacccttttattgcacaccttacgagaacagaaaggaacgtcttcggatatgtgtgaaaacatctatggtcgaagtgcaggcaatgaaatttatgacattcagcttggtgatagcaaaatgtttcgaagattcgcttacaaaagtttcacgtatgcagcatacaatgcattcaaaagatacggcgtcacattaattggtgttaggagacaaccaaaagattctcaaatattcctaaatcccggaccaagtttcaaattggcgtacgatgataccttattctacattgcaataacaagcgaagaagacatggctctagaggagctcacaaagcattcatcaaaagcgaagttttcttctccccaatcagatgggaaacgatccagaaaattgacgcggcaaagtgaatgggggagttttatttctgtcatcgataatagtgaagaagaaaagaaaattagttcaagcatagaattgaagccaacagtgtcaagtccaaatggttcagctcttcatggaaatacgattggttctccttctgcaagttcagttattgatgtcaatatcagtaccagtgatttcaatgaatttccaacttctgatatttctgacaatatcagtgatgctgaagaccaaaatttgtcaataccaataactaatatacccaattatataattggcatgcctcctattacaccatacgttgggcgatcaccacttaaatgtcatctgctaccagaaccaaaacagttttgctgcatggaactgaataaggcatgcacaaaaatccacaagctacaggatcgagaagaaaaaacaagaaccttaactggaggagtaattgtagcttgtcccagagcaggagctggcctctacaatttcattctgccgttgagggcgtatcatcaaccaaaatgttacttgaaaccacttattatcatgttaaatgaaaggccatctccagcattttatgaagcagtttgctcgtttcctctgctctatttcatggttggatcgttcaaaaatattgatgatctactgcaagctgggattttagaagcagaaacagtcgtagtaacagatcaattacaatcaatggaaggaatttactcagatgaagaatatatggctgatgcatacactgttgtcggcgtacaaactatatatagattatttccaagtgtcgatttgatcgttgaattaacacattcaagtaacatgaaattcatgaaatttgatgtaccaacgataccagtccctcgaaatggagcatcaacaaaagaaagtttgaggaatactatcaagctgagaagaagagagatgaaatcacgtcatgatcatttagattatttattcagaggaccatttgcagctgggaatgttttcagtgctagtatgattgacactttactatatcagactttcatgaaagattatatgattacgctgataggattactacttggatgcgaacaaaattctggatctggttatttagcatcgatctccataacagaaaataatgtctggataaaagattatggtcgattatttcaacgcctttgtacaactacatacgatgttcctattggcctatttagacatatcaaaggaactaacaccaatgttgcggatcgaattccagaaaatagagatatttatggaatagtaacgaatcgtatgaaaaggcttggactcaaaggaaagcatgatttgtttgcaaggcaaggaaaatcttacgctctggtgaatcctccacctgattttgacctagaggaaggagatattgtgtatataatcagaagatctccatcaatggctgcaacacatactggattatcaccaaatgatgcaaacgccaatacaacagccttgtaataagtcgtcaacaatcgactctgct

Transcript

scaffold620.g3.t3

AACATGGAAATACGTCTAGTTCACCGGATCGTCTTGGCAATAAAACTATAAATGATAAATGGATTCAGGAAGAGCTTTTCAAGATTCACTTGGTTTTTATGAAGAAAAATACAAGAAAAGTGGGATTCCATATTTGCATTCTCCGTTGCCGCCAAGAATGGCTGAAGATCCGAGGTACAAACTCAGGAATAATCTGACAACTGAGAAACCGTCAGACGAGAAAGAAACAGTCCGAGTAAAATATTATATACACGAGAAAACATTCAGAGAAAGATTAAAGACACTGTTTATCACAAATCAGAAATCAACAATCTTACTTTTTTTGACTACATGTTATGATATGATATCCCTTCTTGATTTTAGTTGGACATTGTTATGGGTTGATAGACATCTGGCAATATGGGGAATACAGGCTGCCATCGCAATATTTGGTATGCTGGATTCAATACTTTCTGGATACTTGTCATACAAGGGTACACTGCTAGGAGCAATGAACAGATACATGATACTGGAGATCGTCACTGGTATTCCATTTATCATTTCGGCTGCCATCGCAATATTTGGTATGCTGGATTCAATACTTTCTGGATACTTGTCATACAAGGGTACCCTGCTAGGAGCAATGAACAGATACATGATACTGGAGATCGTCACTGGTATTCCATTTATCATTTCGATTTTCTGGTCAGATCTGAGAAACCTTTTTGCTCTAACATTTCTTCATTGTTGGATTGCCAAGGACAGTGCACATACGGTATTAAATGATCTGCATCGCCATAGACTTCAGAATCGATCAGCTGTGACTCAAAAAGTCATCTTGGTGGCTCTTAGTGTTATCTGTCTCATCTTCACAAGCATATGTGGCTTACAGCAACTAGAACGTGCCCATGGCAACTGGACGATATTCCAAGCATTATGGTTTGTTGTGGTTACATTCAGCACTGTGGGCTATGGTGATACCGTACCACGTGACACGATTTCAAGAGCATGGGTCATCATCATGATCATCTTGGCTTTATTGGTTCTTCCTGTTGAGTTGGAAGAATTGGCCTTCTTACTTGTATCCAAACAAAAAGAAGGTGGTGTTTACAGTACAGCATACGGAGCAGATAGACATGTTGTTGTTTGTTCAACAGCCTTAAGAGCAAGTACAATGATCGACTTCTTGAATGAGTTTTATGCTGATCCTAAGATGGAGGATGTCCACGTTGTCCTTCTGTCACCAGCTGAGCTAGAAAGTAAGCTGCGGATCCTGTTACAAGTCCCTCTGTGGGCGCAAAGAGTGACTTATCTCAAGGGGTCAGCATTGAATGACCAAGATCTTATTAGAGCAAGAGTGATCGATGCTGAAGCTTGTTTCATATTAACGGACAGAGGGAATCCGGACGTTGATGCACGGGACCATCAATCTATCATGCGAACATGGGCAATCCAAGACTTTGCACCTGCGACGCCCTTATATGTACAAATTCATAAACCAGAGAACAAATTTCACGTCAGCTTCGCAGAACATGTCGTGTGTGAAGATGAGATCAAAAATGCATTGTTGGCATCAAACTGCGTCTGTCCCGGCATTTCAACATTGGTTACCCTTTTATTGCACACCTTACGAGAACAGAAAGGAACGTCTTCGGATATGTGTGAAAACATCTATGGTCGAAGTGCAGGCAATGAAATTTATGACATTCAGCTTGGTGATAGCAAAATGTTTCGAAGATTCGCTTACAAAAGTTTCACGTATGCAGCATACAATGCATTCAAAAGATACGGCGTCACATTAATTGGTGTTAGGAGACAACCAAAAGATTCTCAAATATTCCTAAATCCCGGACCAAGTTTCAAATTGGCGTACGATGATACCTTATTCTACATTGCAATAACAAGCGAAGAAGACATGGCTCTAGAGGAGCTCACAAAGCATTCATCAAAAGCGAAGTTTTCTTCTCCCCAATCAGATGGGAAACGATCCAGAAAATTGACGCGGCAAAGTGAATGGGGGAGTTTTATTTCTGTCATCGATAATAGTGAAGAAGAAAAGAAAATTAGTTCAAGCATAGAATTGAAGCCAACAGTGTCAAGTCCAAATGGTTCAGCTCTTCATGGAAATACGATTGGTTCTCCTTCTGCAAGTTCAGTTATTGATGTCAATATCAGTACCAGTGATTTCAATGAATTTCCAACTTCTGATATTTCTGACAATATCAGTGATGCTGAAGACCAAAATTTGTCAATACCAATAACTAATATACCCAATTATATAATTGGCATGCCTCCTATTACACCATACGTTGGGCGATCACCACTTAAATGTCATCTGCTACCAGAACCAAAACAGTTTTGCTGCATGGAACTGAATAAGGCATGCACAAAAATCCACAAGCTACAGGATCGAGAAGAAAAAACAAGAACCTTAACTGGAGGAGTAATTGTAGCTTGTCCCAGAGCAGGAGCTGGCCTCTACAATTTCATTCTGCCGTTGAGGGCGTATCATCAACCAAAATGTTACTTGAAACCACTTATTATCATGTTAAATGAAAGGCCATCTCCAGCATTTTATGAAGCAGTTTGCTCGTTTCCTCTGCTCTATTTCATGGTTGGATCGTTCAAAAATATTGATGATCTACTGCAAGCTGGGATTTTAGAAGCAGAAACAGTCGTAGTAACAGATCAATTACAATCAATGGAAGGAATTTACTCAGATGAAGAATATATGGCTGATGCATACACTGTTGTCGGCGTACAAACTATATATAGATTATTTCCAAGTGTCGATTTGATCGTTGAATTAACACATTCAAGTAACATGAAATTCATGAAATTTGATGTACCAACGATACCAGTCCCTCGAAATGGAGCATCAACAAAAGAAAGTTTGAGGAATACTATCAAGCTGAGAAGAAGAGAGATGAAATCACGTCATGATCATTTAGATTATTTATTCAGAGGACCATTTGCAGCTGGGAATGTTTTCAGTGCTAGTATGATTGACACTTTACTATATCAGACTTTCATGAAAGATTATATGATTACGCTGATAGGATTACTACTTGGATGCGAACAAAATTCTGGATCTGGTTATTTAGCATCGATCTCCATAACAGAAAATAATGTCTGGATAAAAGATTATGGTCGATTATTTCAACGCCTTTGTACAACTACATACGATGTTCCTATTGGCCTATTTAGACATATCAAAGGAACTAACACCAATGTTGCGGATCGAATTCCAGAAAATAGAGATATTTATGGAATAGTAACGAATCGTATGAAAAGGCTTGGACTCAAAGGAAAGCATGATTTGTTTGCAAGGCAAGGAAAATCTTACGCTCTGGTGAATCCTCCACCTGATTTTGACCTAGAGGAAGGAGATATTGTGTATATAATCAGAAGATCTCCATCAATGGCTGCAACACATACTGGATTATCACCAAATGATGCAAACGCCAATACAACAGCCTTGTAATAAGTCGTCAACAATCGACTCTGCT

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07885 all species →	Ion_trans_2	Ion channel	Family	Interproscan
PF03493 all species →	BK_channel_a	Calcium-activated BK potassium channel alpha subunit	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR047871 all species →	Family	Calcium-activated potassium channel slowpoke-like	Interproscan
IPR013099 all species →	Domain	Potassium channel domain	Interproscan
IPR003929 all species →	Domain	Calcium-activated potassium channel BK, alpha subunit	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10027 all species →	CALCIUM-ACTIVATED POTASSIUM CHANNEL ALPHA CHAIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005228 all species →	Molecular Function	intracellular sodium-activated potassium channel activity	Interproscan
GO:0005267 all species →	Molecular Function	potassium channel activity	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0015271 all species →	Molecular Function	outward rectifier potassium channel activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0016021 all species →	Cellular Component	membrane	Interproscan
GO:0071805 all species →	Biological Process	potassium ion transmembrane transport	Interproscan
GO:0006813 all species →	Biological Process	potassium ion transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K04946	KCNT1, KNA1.1; potassium channel subfamily T member 1	-	Ion channels	ko04040	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.