Gene detail

Detailed information of scaffold628.g4.t1 in Morbakka virulenta

Genomic Location: scaffold628:96526...188250
NR annotation: XP_038671469.1, large subunit GTPase 1 homolog [Scyliorhinus canicula]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

scaffold628.g4.t1

CAAAGTCCTTTGACCAGTTCAACAACAAGAGGTCCTCAGCAAACACTGAATGGAATAACTGTTTTATGAGCATTTAACAGACGGGACGTATTAAATTATGGGTAAAAATAAAAGCTTGGGAAAGCATTCACTTGGGCGTACGCTTCTGAAAGAGAAAAGACAAAGTAGAGGTACTTTAGGGGACAAAGAGCAGTGGCATCACACAAGTGACATTCAAGATGGATATGATTGGGGAAGGCTTAATTTAACATCAGTGACTGAACAAACAGATATCAATGAGTTCCTTGCAACAGCAGAACTTGCAGATACAGAATTTTTAGCAGAGAAAGGGAATTTGCAAATTGTAACATCAAAGAACATTCCAGGTGTGTTGTCAGAGGCACAGCTGAAGGACGTTAAAGAGACACAGTCAAAAAATATAAGGTTTTTAACGGTACCTAGAAGACCTCCGTGGAACAAAGAAACCTCACCCGAAGAATTGAAGAAAATGGAAAAGGAAAGCTTTCTTAACTGGAGGAGAGAGTTGGCACTTCTTCACGAAAGTGACAGCAAACTTCTTTTAACACCATATGAGAAAAACCTTGATGTTTGGCGTCAACTCTGGAGAGTTATTGAGAGAAGTGATGTTGTGTGCCAAATAGTCGATGCTAGAAACCCATTGTTGTACAGATGCGAAGATTTGGATAGATACATATCTGAAGTGAGCTCAAAGAAACTTGTTTTGCTTTTGGTGAATAAATCAGACCTTTTGACGGAAATTCAAAGAAGATACTGGAGTGATTATTTCACATCAGTTGGTGTCAGAGCCATATTTTGGTCAGCACTTGCAGAATCTGATGAGGATGCAAAGGTCAATGAAGAACAACAAGTGTGCATGAAAGATGATGAAAATGAGTATACGACCAATGAAAGTGAAGAGGGTATTGGTGTGCCAAACACATTGGCTTATTTTAaagacgatgaagaagaattaaaagaagaaAGTATGCAAGAAGGTTTAGTAGTACAGAGGAAAACAGAAATTGGTGACAGCAGACCGTTAAATGCGTTAAAAAACGTTTCCGCTACTTTGGACGTATTAAACCTGAATTCCGATGAAAAAATGACGAAAGATGACGCTAACGATTGTGACATCAATGCTTCTCTACAAAGCTCAGAAAGTAGTAAAATACAAAACTCTTTGAATGGTATAAAAAGTCACACAAAAGACCAATTAAATGACGCTAGTTCTAAGTCCATTTCCGAAAATGGGTGTCATTCATACTCAAACAGAACTCAGCTATATACTAAACAGGAATTGATCAACCTATTTAAAATGTTGAAACAGTTACACTTTAGTGAGGACCGTTCCTTCATTACTGTTGGTCTGGTGGGATATCCAAATGTAGGAAAAAGCTCTACGATAAATTCACTGCTTCAAGCAAAGAAGACATCGGTTTCAGCGACGCCAGGAAAAACTAAACATTTTCAGACATTATTCCTAGACGAAGAAATATGTTTATGTGACTGCCCCGGTCTTGTATTTCCACATTTTGTTCCATCCAAAGCAGAAATGATTCTTGCAGGAATACTTCCTATTGATGAAATGAGGGACTGCATCCCACCTGTCACCATGcactgggatgacgtaacagttgaggactcggagcctggtgttcaaggaaatagtttggtttttcagtatcttagacattcgctggaataccccctttgctgtggcaattcgtttccgtatttctaccatgcatcttccatctgatgtaatcatgctgccaagataattaaaattatctacttgttgaatgtcttctccatctattgatattttgcagctcaaattctcattccttttgctaaccgtcatgcaaaaagtcttccgacgattgatactgagaccccttgccccactttcctctacaacggtgtcaagcagttgttgtagcttctctggagtgtcggctatgagcgtcgtgtcgtcagcatatcgtatattattcaagttgtaccctccgatcacaaaaccatgttttccctcgatacttctcatgatgttttcactgtatagattaaataggtctggtgagaagacacaaccttgtctaacacctcttcgaatattgcagtatttaccaacctcgttctgcactctcacacccgcagtttgctcccagtataagtttcttatgagtcttatatcttttccatctatgtctagatcttgtatcatttctatcatacactcgtgtttcactttatcaaatgcttttgagtagtcaatgaaacacaggtatagatccctctgcatttcgatggctcgttccgacagcatcctcatcacaaatatagcgtttcttgttccagcatcttggacaaaaccaaattgctgtttccctatctctggcctcattgctctccttgctcttgccattatgactcgcataagtatcttagttatatgactcattagactgatggttcggtggagctcgcactcggtagcccctggtttcttgggcagggcgatgaatacagattttgttaaatccgaagggatttctccgctgtcatatatatcgttgagtagttcggtgactttgtttattccaaattcctcgagtgcctttatcatctcaatgcagattccatctggacccatggctttattcgccttcatcttcttaattgccgctttcacttcacatgatagaattctagggccttcaataaccttcctgatggttggttttcctcccctttcatccatgaacaactcgtcaacatactctgcccaacgctccatcaactcttctttctccatgatcatatgtccatcctttgctttaatgcacccacttgaagagcagggtctctttcctaccaaatccccaatctttttatgcatgaaactaggatctgcagtcttgcagctttcaatctctagacatttctcatttatccaggcttctttcgcctttctacattcgtttcttatgtcacgatccaaagctttgtattggattgaatctttctctggaattttctgtctctgtctcatcttttgcaaaatttctggcttcatccaagcttgctttttctcttttttcttgggttggatgacttcttttgctgactctactattgcttcttttagcacttcccacatgctgccttctctctcgagtacttcaaaccggttctgtactgcagctgcatatttctctctgagttcttggttttcacgcaagagattccactctagttttgcttctggggctgtacgttttagcctacgaagcttcagtttgactgtacatacaaccggattgtggtcgctcccacaatctgctccaggataggacttcgcttgttgaacagcatttctaaagcgactgttgatggtcacgtagtcgatttgatttttatacctgtctccagggtctttccatgtccacaagcgtctttcatgatttttgaaccatgtgttcataatcacctgattatgtgctgcacaccagtctatccatctttctcctctttcattttgcattcctagaccatgctttcccactatatttcctactctttggcttccaacctttgcattcaggtctcccatcacaatgacaacatcttgggatttatggtgcctcatagcttcctcaagctgttcatagaacatgtctatctcatcctcactactgtcggctgttggtgcatacacttgaataacagttatgtcaaaag

Protein

Uniprot

Uniprot term	Description
Q3UM18	Large subunit GTPase 1 homolog OS=Mus musculus OX=10090 GN=Lsg1 PE=1 SV=2
Q5BJT6	Large subunit GTPase 1 homolog OS=Rattus norvegicus OX=10116 GN=Lsg1 PE=2 SV=1
Q6NY89	Large subunit GTPase 1 homolog OS=Danio rerio OX=7955 GN=lsg1 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01926	MMR_HSR1	50S ribosome-binding GTPase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR043358	Family	Ras GTPase GNL1-like	Interproscan
IPR006073	Domain	GTP binding domain	Interproscan
IPR030378	Domain	Circularly permuted (CP)-type guanine nucleotide-binding (G) domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45709	LARGE SUBUNIT GTPASE 1 HOMOLOG-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000054	Biological Process	ribosomal subunit export from nucleus	Interproscan
GO:0003924	Molecular Function	GTPase activity	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0005525	Molecular Function	GTP binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14539	LSG1; large subunit GTPase 1	EC:3.6.1.-	Ribosome biogenesis	ko03009	deepkoala