Gene detail

Detailed information of scaffold63.g15.t1 in Aurelia aurita

Genomic Location: scaffold63:278486...284209
NR annotation: no NCBI-NR hit recorded
Species abbreviation AAURI1 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold63.g15.t1

gtctaaatatattttgactgaaatcaagatggcatggaagcagcaacttgtgattttaaaatcgatgttgcgttcgaaacgatttatttcgctgtgtctggcgatactcgcatttaccgcagcattaatcttatttggcttgaatcacttctcggaaagcgatcgtcgtcaaaattacgttccaaactggattaaagagatttaccaatcgacgaagaagaaacctcgtgtcgatatagcttcgatatcatgggtaaaacgagaatcgccgatcaaacttctgaacccaaatgaaggaattgacgaacgagagcgtgaaaggttacacaagaaagaagaaagatacatgaaggcccatttatcaaaacataagaaacatgtaacaaattatacgagttgtttatcacggaggtttgataagtttcaaaatagttttcatggacagtcgttgagttttccactggattttagcgcaatgatggctaagtttcataaagattgcaatgtggagatttttgggagaacagaaaataaatgccattttgatgaagaaaagatgtctggtaatttagctgtaagaaatgaacatttgaaaatgtcgaaactgaagaaggaactaccagatgtgcgattaggaggaatttggagtccaatggaatgtgtcccaaaggcaaagctagcagtgatcataccatttcgaaacaggcaaaaacatttgccagttcttcttcgtcaactccatccaatacttcaaaaacagaatcttttgtaccgaatattcgtgatcgaacaggcagacctttacccattcaaccgtggcaagctgatgaatgttggattcaatgaagcgatcaagttgtttgattttgattgttttgtgtttcatgatgttgatttgattcctgaaaatgatcgaaatgattatggatgtccatcatcaccaaggcatatgtcagctgctatcgataaatttgaatacaatttgccatatcatggtttatttggtggagtggaaatgtttacgaaggagcattatcaaatggtgaatgggtttcgaaattcttattggggttggggtgcagaagatgacgatctatacagaagtttgccatatcatggtttatttggtggagtggaaatgtttacgaaggagcattatcaaatggtgaatgggtttcgaaattcttattggggttggggtgcagaagatgacgatctatacagaaggattacgaaattcaaccttcatctgactcgaccatcgatggatgttggaagatattcaatgatcaagcatccaggatcagaaaaaccaccggatagaatggacaaactacaaatggccgagagctcaataacaactgatggcctactttcattattgtacaaagtgttattaattaaagagaacttgttatacacgttggtgagagttgatttaagaatggaagaagacatggtttattgaaatattgaagaagataagggaccgctcattatttacagaggggttggtaccgaagagaaatgttttttggtccaaacaatcttcttacccaactcaaaaggtgatggaaaaaacctctaacccaacaatttacagcttacaaaaaattctacccaacccttactagaaacatgacttgaatgtgaaaaaatgtaaattgttaaagttagttgacggagctaaagccaacgtcgttccaaaaatagtttcaattcaactcaattgaagtttaggatacaattgaattgaccaatcaacgcttgcctttccacgcgtgactgaagtgatcacgtgaaattggaaccacagaaacaaattgatcacgtgaaattgttgatcacacaaagttggtcaattttcattggctatgatacaagatctatttttatcttacccagtcccctgcatatgcagctctgagttagctatttatctccgtcaactaactttaatgtaatagttagttttgaagccaatcgcaagaaaaaaaggcaaagggagcaaaaaagcaagaacaagaagaagaaaaaagttcatttctccagggtagcagacattgaaagcgaatcagatgatgaggatgatgttgatgatgatgaaatggacaattttattctttaaacatttagtgttaattggtgggaaaattttgcttacccaatcttgaagttacatgaaaaaatatttacccaacctttttatgtcagaaaatttcttttacccaacccatttctcttcggtaccaacccctctgtaaataatgagcggtccctaagtaactaaatgtttacatatcgagtctaaaggaaggacggcctcagaagaatacagatgtaactacgaggagactttttgtgagagtgacaaatgtaaaataataacatctttgatctttttagagcgaggtatagaaaggaatttctaggtggaagtgaggcaatttaattttgttgacaatttcaataggcctattgctcgatccagactcttttgctgaatagataaaaggtgtattg

Transcript

scaffold63.g15.t1

GTCTAAATATATTTTGACTGAAATCAAGATGGCATGGAAGCAGCAACTTGTGATTTTAAAATCGATGTTGCGTTCGAAACGATTTATTTCGCTGTGTCTGGCGATACTCGCATTTACCGCAGCATTAATCTTATTTGGCTTGAATCACTTCTCGGAAAGCGATCGTCGTCAAAATTACGTTCCAAACTGGATTAAAGAGATTTACCAATCGACGAAGAAGAAACCTCGTGTCGATATAGCTTCGATATCATGGGTAAAACGAGAATCGCCGATCAAACTTCTGAACCCAAATGAAGGAATTGACGAACGAGAGCGTGAAAGGTTACACAAGAAAGAAGAAAGATACATGAAGGCCCATTTATCAAAACATAAGAAACATGTAACAAATTATACGAGTTGTTTATCACGGAGGTTTGATAAGTTTCAAAATAGTTTTCATGGACAGTCGTTGAGTTTTCCACTGGATTTTAGCGCAATGATGGCTAAGTTTCATAAAGATTGCAATGTGGAGATTTTTGGGAGAACAGAAAATAAATGCCATTTTGATGAAGAAAAGATGTCTGGTAATTTAGCTGTAAGAAATGAACATTTGAAAATGTCGAAACTGAAGAAGGAACTACCAGATGTGCGATTAGGAGGAATTTGGAGTCCAATGGAATGTGTCCCAAAGGCAAAGCTAGCAGTGATCATACCATTTCGAAACAGGCAAAAACATTTGCCAGTTCTTCTTCGTCAACTCCATCCAATACTTCAAAAACAGAATCTTTTGTACCGAATATTCGTGATCGAACAGGCAGACCTTTACCCATTCAACCGTGGCAAGCTGATGAATGTTGGATTCAATGAAGCGATCAAGTTGTTTGATTTTGATTGTTTTGTGTTTCATGATGTTGATTTGATTCCTGAAAATGATCGAAATGATTATGGATGTCCATCATCACCAAGGCATATGTCAGCTGCTATCGATAAATTTGAATACAATTTGCCATATCATGGTTTATTTGGTGGAGTGGAAATGTTTACGAAGGAGCATTATCAAATGGTGAATGGGTTTCGAAATTCTTATTGGGGTTGGGGTGCAGAAGATGACGATCTATACAGAAGTTTGCCATATCATGGTTTATTTGGTGGAGTGGAAATGTTTACGAAGGAGCATTATCAAATGGTGAATGGGTTTCGAAATTCTTATTGGGGTTGGGGTGCAGAAGATGACGATCTATACAGAAGGATTACGAAATTCAACCTTCATCTGACTCGACCATCGATGGATGTTGGAAGATATTCAATGATCAAGCATCCAGGATCAGAAAAACCACCGGATAGAATGGACAAACTACAAATGGCCGAGAGCTCAATAACAACTGATGGCCTACTTTCATTATTGTACAAAGTGTTATTAATTAAAGAGAACTTGTTATACACGTTGGTGAGAGTTGATTTAAGAATGGAAGAAGACATGGTTTATTGAAATATTGAAGAAGAtaagggaccgctcattatttacagaggggttggtaccgaagagaaatgttttttggtccaaacaatcttcttacccaactcaaaaggtgatggaaaaaacctctaacccaacaatttacagcttacaaaaaattctacccaacccttactagaaacatgacttgaatgtgaaaaaatgtaaattgttaaagttagttgacggagctaaagccaacgtcgttccaaaaatagtttcaattcaactcaattgaagtttaggatacaattgaattgaccaatcaacgcttgcctttccacgcgtgactgaagtgatcacgtgaaattggaaccacagaaacaaattgatcacgtgaaattgttgatcacacaaagttggtcaattttcattggctatgatacaagatctatttttatcttacccagtcccctgcatatgcagctctgagttagctatttatctccgtcaactaactttaatgtaatagttagttttgaagccaatcgcaagaaaaaaaggcaaagggagcaaaaaagcaagaacaagaagaagaaaaaagttcatttctccagggtagcagacattgaaagcgaatcagatgatgaggatgatgttgatgatgatgaaatggacaattttattctttaaacatttagtgttaattggtgggaaaattttgcttacccaatcttgaagttacatgaaaaaatatttacccaacctttttatgtcagaaaatttcttttacccaacccatttctcttcggtaccaacccctctgtaaataatgagcggtccctaaGTAACTAAATGTTTACATATCGAGTCTAAAGGAAGGACGGCCTCAGAAGAATACAGATGTAACTACGAGGAGACTTTTTGTGAGAGTGACAAATGTAAAATAATAACATCTTTGATCTTTTTAGAGCGAGGTATAGAAAGGAATTTCTAGGTGGAAGTGAGGCAATTTAATTTTGTTGACAATTTCAATAGGCCTATTGCTCGATCCAGACTCTTTTGCTGAATAGATAAAAGGTGTATTG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13733 all species →	Glyco_transf_7N	N-terminal region of glycosyl transferase group 7	Domain	Interproscan
PF02709 all species →	Glyco_transf_7C	N-terminal domain of galactosyltransferase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029044 all species →	Homologous_superfamily	Nucleotide-diphospho-sugar transferases	Interproscan
IPR027995 all species →	Domain	Galactosyltransferase, N-terminal	Interproscan
IPR003859 all species →	Family	Beta-1,4-galactosyltransferase	Interproscan
IPR027791 all species →	Domain	Galactosyltransferase, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19300 all species →	BETA-1,4-GALACTOSYLTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005794 all species →	Cellular Component	Golgi apparatus	Interproscan
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0008378 all species →	Molecular Function	galactosyltransferase activity	Interproscan
GO:0016757 all species →	Molecular Function	glycosyltransferase activity	Interproscan
GO:0070085 all species →	Biological Process	glycosylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for scaffold63.g15.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.