Gene detail

Detailed information of scaffold63.g55.t1 in Morbakka virulenta

Genomic Location: scaffold63:2365336...2375214
NR annotation: CAB3995587.1, Hypothetical predicted protein [Paramuricea clavata]

Gene Structure

More details in Jbrowse

Sequence

CDS

scaffold63.g55.t1

TTGATACCCGGACGAGTTCCGTATCGGGTAGCAGATGAGCTGCCGTGGCAGCTGTTGCAGATGGATATGAAGCAGGAGCTGAAGGAATGTCTAAGTGTTTTTTGTATATTCTTCCGGCTTTATAGAAGGGGCCGCTGTACAGAATTAATACACTATTGGAAGGAGTTGGATATTGACATAGCTGGAATGGCAGACATATATCTTGAGTTCGTAAAAACGATGGAAAGAGATCCAGTCCATGGTCCAAATACACCACCTATGTATGACGCTCTTGGTATGTTTTTGAAGGAGGCCGGGCAACTCAGTTTGGCTATCAAGCCATTGGAAAGAGCGTTAGAAATACGGGAATCAACATTAGATCCAGATGATCCTAGAACTGGACAATCATTTCATCATTTAGCTGGGCTCTATAACCAATGGAAGAAATTTAGAACTGCAATTACTATGTACAAGCAAGCTCTCGAAATAAAGGAGAATTCATATGGCCCAAACCATCCTTCAGTAGCAAAGGAGTTAGAAGCATTGTCAATGTTATATTTTTTGCAGGACAGggacgataaatataccaactttggttaccgtgccatcaaaggattccttccgcgcaactggttccaatttgcagacgatgcaattgcagtcacctcattggaaggagaaaaccaaattcttctgaacttcttcagcaaatggtgtaaatggtcagaaatgagaataaaaccgtcaaaatgttacgccttcggtatctgtaaaaagggtacattgtcagttcaatacaaaccaaaactctacttagacaacaagcttgtaccacaaatcgagattgatcatcattttacctatctgggtcgacactttgacctcaaaatgacggatgaaatgcacaaaaaggaaataataaaaattgtgactgaacacctcgtaatcatcgatggactaccacttcatccgaaaaacaagttgaagctgtaccaacaatggacattatcgaaaatcagctggcacctgacagtctccaaaatttcgaacacttgggttaagaacaacatcgacaacctcgtatccaggtacatcagactatggctcgaaatacccatcaatggtaccctgtgtgtcatcacccaatcaaaacgaaaatttggtcttgggctgatattaccatctactagacatactcagtgccaggtgacatttcgaaacaaaattggccgttcacataacgagaatattcgtataatccacaaatccacaggtgcggtaaatgttcaatatgatcaattcaacaaaactcgtgaagctttgaagcaaattcgcctgtcggacgagcaccacttaatcaataacttaaccacacaaagtttagtgattaaatctatatggaagtatgccgacagtaaattcatcaatcagtggtccaacgtcattagccacctcccaaggaacatcttcagttttgtcgtccgttacctaaacaatacgcttgcaaatgctactaatgcagtcaagtggggaatagccaacgattccacctgcagattttgtgatcgccagcaaaccctcggccacgtcgtcggtggatgtcaatctgcattagacgagcttagatataactggagacacaactcaatccttctccacatttataaaaccgttacatctcaaggtttacaagcgtatgttgatattgacggctaccccaacccgtctataataacaggtgatgcccaaagaccagatcttgttatagtgaaaggtgacaagttactaatattagaacttacagctggatttgaaaccaatatagaaagtaacttcgaccgtaaaaatcaacgctacgaacagttattatccgatttatcaagaagatttaaagtttattatgtaaacttgagcctcggaactctaggtgtgtttgggaaaaatagcttgattgtttcaaaattaaagtccctcgatctcaatgacgaaactgttaaatttatcatcaaaagatcgataaacatttgtatacggacatcatactttattttctgtatgagaaacaaagaatggacaaacccagaattattaatctggtaa

Transcript

scaffold63.g55.t1

TGATTGGAAGTCTGAAAAAGTAAAGAAATGGAGGCTGGATATTATTGAAATATTTAGAGTCAAGTTGATACCCGGACGAGTTCCGTATCGGGTAGCAGATGAGCTGCCGTGGCAGCTGTTGCAGATGGATATGAAGCAGGAGCTGAAGGAATGTCTAAGTGTTTTTTGTATATTCTTCCGGCTTTATAGAAGGGGCCGCTGTACAGAATTAATACACTATTGGAAGGAGTTGGATATTGACATAGCTGGAATGGCAGACATATATCTTGAGTTCGTAAAAACGATGGAAAGAGATCCAGTCCATGGTCCAAATACACCACCTATGTATGACGCTCTTGGTATGTTTTTGAAGGAGGCCGGGCAACTCAGTTTGGCTATCAAGCCATTGGAAAGAGCGTTAGAAATACGGGAATCAACATTAGATCCAGATGATCCTAGAACTGGACAATCATTTCATCATTTAGCTGGGCTCTATAACCAATGGAAGAAATTTAGAACTGCAATTACTATGTACAAGCAAGCTCTCGAAATAAAGGAGAATTCATATGGCCCAAACCATCCTTCAGTAGCAAAGGAGTTAGAAGCATTGTCAATGTTATATTTTTTGCAGGACAGggacgataaatataccaactttggttaccgtgccatcaaaggattccttccgcgcaactggttccaatttgcagacgatgcaattgcagtcacctcattggaaggagaaaaccaaattcttctgaacttcttcagcaaatggtgtaaatggtcagaaatgagaataaaaccgtcaaaatgttacgccttcggtatctgtaaaaagggtacattgtcagttcaatacaaaccaaaactctacttagacaacaagcttgtaccacaaatcgagattgatcatcattttacctatctgggtcgacactttgacctcaaaatgacggatgaaatgcacaaaaaggaaataataaaaattgtgactgaacacctcgtaatcatcgatggactaccacttcatccgaaaaacaagttgaagctgtaccaacaatggacattatcgaaaatcagctggcacctgacagtctccaaaatttcgaacacttgggttaagaacaacatcgacaacctcgtatccaggtacatcagactatggctcgaaatacccatcaatggtaccctgtgtgtcatcacccaatcaaaacgaaaatttggtcttgggctgatattaccatctactagacatactcagtgccaggtgacatttcgaaacaaaattggccgttcacataacgagaatattcgtataatccacaaatccacaggtgcggtaaatgttcaatatgatcaattcaacaaaactcgtgaagctttgaagcaaattcgcctgtcggacgagcaccacttaatcaataacttaaccacacaaagtttagtgattaaatctatatggaagtatgccgacagtaaattcatcaatcagtggtccaacgtcattagccacctcccaaggaacatcttcagttttgtcgtccgttacctaaacaatacgcttgcaaatgctactaatgcagtcaagtggggaatagccaacgattccacctgcagattttgtgatcgccagcaaaccctcggccacgtcgtcggtggatgtcaatctgcattagacgagcttagatataactggagacacaactcaatccttctccacatttataaaaccgttacatctcaaggtttacaagcgtatgttgatattgacggctaccccaacccgtctataataacaggtgatgcccaaagaccagatcttgttatagtgaaaggtgacaagttactaatattagaacttacagctggatttgaaaccaatatagaaagtaacttcgaccgtaaaaatcaacgctacgaacagttattatccgatttatcaagaagatttaaagtttattatgtaaacttgagcctcggaactctaggtgtgtttgggaaaaatagcttgattgtttcaaaattaaagtccctcgatctcaatgacgaaactgttaaatttatcatcaaaagatcgataaacatttgtatacggacatcatactttattttctgtatgagaaacaaagaatggacaaacccagaattattaatctggtaaccagctgatacatcgtctctcagtgatatgcccaaatggagagtatcactatagaggatgtaccacaactaggcttcattgtgatatttccagtcctctggatccagtgacagcttagttgtgttgcaacctgtattgagtagatcaatttcattgtaaattttctagatcgttaatttacaaataaaaccatgtgaagttt

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13424	TPR_12	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019734	Repeat	Tetratricopeptide repeat	Interproscan
IPR051787	Family	Effector and Ciliary Development-Associated Protein	Interproscan
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45641	TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870)	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0001822	Biological Process	kidney development	Interproscan
GO:0007368	Biological Process	determination of left/right symmetry	Interproscan
GO:0060026	Biological Process	convergent extension	Interproscan