Gene detail

Detailed information of scaffold64.g35.t2 in Aurelia aurita

Genomic Location: scaffold64:437926...460517
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold64.g35.t2

ctacggtgaactggcctaaaagcacaagcaaggaatatttggcaactcgaggtctttttcatgccagaatgatggagcaagacgcgttatttgtctctagtaatgtaccagcattcgtgctaaagctttggaaattagttgaagatgcaagcgtcaaccatttgatatcatggagcaagggaggtacagcattttgtgtacatgatcctgttacattttccagagaagttctaccacattatttcaaacacaacaatttcacaagttttgtcagacagctgaatatgtatggtttcaaaaaggtagttgcaactgatcaaggtggtatccgtccagaaaaagatgaatgggagtttcaccatcaaaactttattcaaggcaaaaaggaaatgcttgaattagtgaaaagaaaagttcaccctgaggaaaagaaagtaaagggtgagaatgttacaaatattttagaagacgtaaaggagttacaaacaaagcatgttgtcgtcaaaacatcactggagcaattgaagcttgaaaacgaattgttatggcgagaagtaactgatctcagggtgaaacatagcaagcaacaacatgttttgaataagttgatcaagtttctgatcttaatgtatggaggcaagagaggagttggaacacgtaaaaggctcgctattgaatcagcacagagtgaatcgtcaaagcgaagacgttcagggcagcaggcacaaatcgaagaacttgacaatttgcaatatgttgtccaatcgccaaagtctgcagaaacaattgcgtcgtcgtcatttgataaaggccctctaattaccgtgcttccagatgagccacgacctcaacatatgtcgatcaaaactcctgttatcatcccgtcatcatccacccatacagctccacaaagcacaacagcaacaggcaaaacacaaacgaacactaaaggcaaagcaaagaaaaaacaagcaagctcttcgaaaacaaatgggaattcgcttgatttaaaaatgccaacaatggtttcattgagcactattaaagaaccaaatattgacttttcaccaagtattttcgagaattttggacagatatttccgtctgatacgaatttagatattggtgaaactttggaagaattagagagttcaaataacccgtcgaaattggttctcttcaatcgtcaaaacagtagcccgaaggaagttatcgatacaaatgtggacgacattacaaattcactggattctttacacaatttattgtctggaccacagtttaatatcgaagcagatatgctggcacagttgttcaaccctgaggcacctattaattctgaagctattgccagtcacgcaatgatcgaagatctgcaaagaacgagtgatgcccagagtgcattggatggcagttgtggaagtggagacaatgatgttgacagcatggcacctttctcccctgggatgtttttgaatgatgttgatgaagcatccaatgacacatcagacaaagaaccaaatttggaggaagattcacttttgtaaattattgtagctacgtgtttagctgtctagtatttgttgactgaagtctcaattacttaattcacgttgttttaacgttttagcgtttatatcataaatgtggtcatggcacattatatagcatatagaatagcacccaaaaagcggtggctctgtctcaatgcatgctatccttgccactctcgattccagaatagacgttcctcccccttattagtattttgaaaaaatctatccagggcatccttattccagaccccccatttgtttatttcgaccttcttgaagttgaaacatgtgtgattcgaactatactgtactgtatttctcatttggataatttgtcagtgatgcttaatttgtttgtgatttacagtcaaagacactcgtgtgttcaaattccagaccccgctttgttaaatttcaggaaattttccacccaccccctttattccagcgtcctgtctattccagactcgagagtagaagtcattgaaagagttccttgtaagttctatttgatcttttttggagaaaactgctcatataagaacctaactgttcgagcttaagctcaaacggttcctgtggagaatctaaaaagatgttgtagagaacatgaagtgaggctgttttagttcaattatttagaaaatttctgctttgaaaactggtttctggagttttcgatgcaattgtgttttattagtactaataaagaaacttgagcctgtagcccctttaagtggaaggttttaggatatgcctgtttttactgtttctaagactttagagagtatggtttatgcttttgcactctatatttctcgagggtaactgaaaagtttgtaagtctagtcaagggcgcctaccttgtatgaattggatttattcgcagtcctgttttcgtggcatagcaatagacgattccggaaaag

Transcript

scaffold64.g35.t2

CTACGGTGAACTGGCCTAAAAGCACAAGCAAGGAATATTTGGCAACTCGAGGTCTTTTTCATGCCAGAATGATGGAGCAAGACGCGTTATTTGTCTCTAGTAATGTACCAGCATTCGTGCTAAAGCTTTGGAAATTAGTTGAAGATGCAAGCGTCAACCATTTGATATCATGGAGCAAGGGAGGTACAGCATTTTGTGTACATGATCCTGTTACATTTTCCAGAGAAGTTCTACCACATTATTTCAAACACAACAATTTCACAAGTTTTGTCAGACAGCTGAATATGTATGGTTTCAAAAAGGTAGTTGCAACTGATCAAGGTGGTATCCGTCCAGAAAAAGATGAATGGGAGTTTCACCATCAAAACTTTATTCAAGGCAAAAAGGAAATGCTTGAATTAGTGAAAAGAAAAGTTCACCCTGAGGAAAAGAAAGTAAAGGGTGAGAATGTTACAAATATTTTAGAAGACGTAAAGGAGTTACAAACAAAGCATGTTGTCGTCAAAACATCACTGGAGCAATTGAAGCTTGAAAACGAATTGTTATGGCGAGAAGTAACTGATCTCAGGGTGAAACATAGCAAGCAACAACATGTTTTGAATAAGTTGATCAAGTTTCTGATCTTAATGTATGGAGGCAAGAGAGGAGTTGGAACACGTAAAAGGCTCGCTATTGAATCAGCACAGAGTGAATCGTCAAAGCGAAGACGTTCAGGGCAGCAGGCACAAATCGAAGAACTTGACAATTTGCAATATGTTGTCCAATCGCCAAAGTCTGCAGAAACAATTGCGTCGTCGTCATTTGATAAAGGCCCTCTAATTACCGTGCTTCCAGATGAGCCACGACCTCAACATATGTCGATCAAAACTCCTGTTATCATCCCGTCATCATCCACCCATACAGCTCcacaaagcacaacagcaacaggcaaaacacaaacgaacactaaaggcaaagcaaagaaaaaacaagcaAGCTCTTCGAAAACAAATGGGAATTCGCTTGATTTAAAAATGCCAACAATGGTTTCATTGAGCACTATTAAAGAACCAAATATTGACTTTTCACCAAGTATTTTCGAGAATTTTGGACAGATATTTCCGTCTGATACGAATTTAGATATTGGTGAAACTTTGGAAGAATTAGAGAGTTCAAATAACCCGTCGAAATTGGTTCTCTTCAATCGTCAAAACAGTAGCCCGAAGGAAGTTATCGATACAAATGTGGACGACATTACAAATTCACTGGATTCTTTACACAATTTATTGTCTGGACCACAGTTTAATATCGAAGCAGATATGCTGGCACAGTTGTTCAACCCTGAGGCACCTATTAATTCTGAAGCTATTGCCAGTCACGCAATGATCGAAGATCTGCAAAGAACGAGTGATGCCCAGAGTGCATTGGATGGCAGTTGTGGAAGTGGAGACAATGATGTTGACAGCATGGCACCTTTCTCCCCTGGGATGTTTTTGAATGATGTTGATGAAGCATCCAATGACACATCAGACAAAGAACCAAATTTGGAGGAAGATTCACTTTTGTAAATTATTGTAGCTACGTGTTTAGCTGTCTAGTATTTGTTGACTGAAGTCTCAATTACTTAATTCACGTTGTTTTAACGTTTTAGCGTTTATATCATAAATGTGGTCATGGCACATTATATAGCATATAGAATAGCACCCAAAAAGCGGTGGCTCTGTCTCAATGCATGCTATCCTTGCCactctcgattccagaatagacgttcctcccccttattagtattttgaaaaaatctatccagggcatccttattccagaccccccatttgtttatttcgaccttcttgaagttgaaacatgtgtgattcgaactatactgtactgtatttctcatttggataatttgtcagtgatgcttaatttgtttgtgatttacagtcaaagacactcgtgtgttcaaattccagaccccgctttgttaaatttcaggaaattttccacccaccccctttattccagcgtcctgtctattccagactcgagaGTAGAAGTCATTGAAAGAGTTCCTTGTAAGTTCTATTTGATCTTTTTTGGAGAAAACTGCTCATATAAGAACCTAACTGTTCGAGCTTAAGCTCAAACGGTTCCTGTGGAGAATCTAAAAAGATGTTGTAGAGAACATGAAGTGAGGCTGTTTTAGTTCAATTATTTAGAAAATTTCTGCTTTGAAAACTGGTTTCTGGAGTTTTCGATGCAATTGTGTTTTATTAGTACTAATAAAGAAACTTGAGCCTGTAGCCCCTTTAAGTGGAAGGTTTTAGGATATGCCTGTTTTTACTGTTTCTAAGACTTTAGAGAGTATGGTTTATGCTTTTGCACTCTATATTTCTCGAGGGTAACTGAAAAGTTTGTAAGTCTAGTcaagggcgcctaccttgtatgaattggatttattcgcagtcctgttttcgtggcatagcaatagacgattccggaaaag

Protein

Gene family

Family type	Membership / link
Transcription factor family	HSF · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00447 all species →	HSF_DNA-bind	HSF-type DNA-binding	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000232 all species →	Domain	Heat shock factor (HSF)-type, DNA-binding	Interproscan
IPR036390 all species →	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR027725 all species →	Family	Heat shock transcription factor family	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10015 all species →	HEAT SHOCK TRANSCRIPTION FACTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0043565 all species →	Molecular Function	sequence-specific DNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09414	HSF1; heat shock transcription factor 1	-	Transcription factors	ko03000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.