Gene detail

Detailed information of scaffold65.g7.t1 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold65:139704...151824
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold65.g7.t1

gatacttctgttacgaacgctatgcagtgaggttgccttgaacagtcttcttaaagatattgactgaaagaagttcttcctttgccgaatactgcaatattgtatcagcttgaaaaagagttccatccttcttgctgagaacggtcttattacagaaataacatcagagaagttatagctacccttgccgatcacagatatcagatagttttccacaagataacgtgaagagaagatccacccttataaagcaccgtctcgcctgctgagagcatccagagaattgtaatggctataaaatcaacaatagttgtcataatcactgcctttttggccatgaaagaggcaatggggtatccaccgctcttccaagacctggctaatttaaacgcgaaatatgaagttaatgatgactactacgatagtgggcctaaaagtttcaagcaacacgtgatcgaaaatagtaaaggcacattgatcatgaaagctgatgaatggaaattagaatggtgcaaagcgaaatctttcaatcaaacgatacgccatcctggttgcttaccgcgaataattcaaaacaattactgctacgggcaatgcaattcaatctacattccaggtgaaaggcgcctcgaaggctgcaactcgtgtatgcccaagagctacgaaatggccgctataactttgctttgtccattctcgaaacaaaaaaggcaccataagcaaattcaactgatctactcctgttactgctacaattgtccgaagcctgtgtgaccgagtcacttgtacaaatctgctgccagctcgccagggcaaaggacctaaaatgaacgagctttgaactgctgtcagttttaggccaattggatacgccaggttttcagctgtgctctggttgccgtagacaatagcattgtaaataaattgcaaacaaaacccaagggactgaaaatgtagtagatagtgtatatatcagcatcattggcatcaaatttttaaaatggttctgtaaatgtgtacggagtggccgagtgggtcaaaaaagctttgttgttttaaaactcccggaaatttaaaaaatcaactaatgttgaatttgttttcgtgatgcctttgcatcgaacatcaaattgaatttagagatattgactatgctaccaaaagctgttacttcatgaaattatgaaagtttgtgaactacctggtttggaagcatggtacgaaattgcacgtaataatacacaaggcagttttgtttcgtttgatagaattcttcaagatgattaactattaagaaatcaaaaattaatgtggagtcgtaaggctaggaatcctaggatttttaatgaattctttcaaaaaaggggcaagggtctttgaatatacgaaatatcaaaattcattcagttcattcagtactttattctaagtgaactggaaggatttttagctattcaaagataatttaggcccactgtgcatgccgcatccaggcatgggacccctagtctaacgtccattcggacggcgaagtgacttgcgaggtcaggcctttgagaggtcacccatccggagtttgacctcactcgatcgagcttaatttcagttacctgacggaaactgtatgagccgctcggccactcgagctgttcacttcgaacgaagacgtaagaaccattgcaggaagccattttttagatttgatgccaatgcggtatataacatgctgtaaatagcaccaataatccttacaatacaataatttatcattagatccgtgtaaattcatatacattaccggatgcctatcaggcccggaggtaatttaacctccctctccgctccggcagcaccaagttactgagtatcaaaaccacaaaagttatctaagtctgtttaccgtggtccgtctgatagatccctctccgatagttcctggatctgccattccaacattctgtaatggaacataaaagggagagagaagagcgatgaggaatttctgtctctccctcttctttattcctttacggaacgttgcaatggcagatccggaattgggtgggtggactacaggaaatagacttagggcaagtttgccagtattttgtaaatgggaacgtaggcaagaccaattttcagtaaaagacagctattcataggactcaaagactaatcattacgatagtgacggccttgtctgtaggatgtcctaataaattcattcttcgtttgcccctgtttgcctggctactgtcaaagagcgaaatgtccaatttgtctgtttatcatatttttttgatagaagagatttcaacctagagttggatacgtaattgagtaaatctgacaattagttctacatctttgaattaacgtttgcattgacccaactgcacaaaaataagctgaaagtgagatgatttccaaaataagatagggaaaatgaaattttaatgatcttcaaaacagctagctttttctgacacacctatagatcttagcatttgagaatttgacgttcaatcttccgaacattcccctctgttttgtgaaattactttattgttgatgtgataaaatattcaagataaattgtatgataaaag

Transcript

scaffold65.g7.t1

GATACTTCTGTTACGAACGCTATGCAGTGAGGTTGCCTTGAACAGTCTTCTTAAAGATATTGACTGAAAGAAGTTCTTCCTTTGCCGAATACTGCAATATTGTATCAGCTTGAAAAAGAGTTCCATCCTTCTTGCTGAGAACGGTCTTATTACAGAAATAACATCAGAGAAGTTATAGCTACCCTTGCCGATCACAGATATCAGATAGTTTTCCACAAGATAACGTGAAGAGAAGATCCACCCTTATAAAGCACCGTCTCGCCTGCTGAGAGCATCCAGAGAATTGTAATGGCTATAAAATCAACAATAGTTGTCATAATCACTGCCTTTTTGGCCATGAAAGAGGCAATGGGGTATCCACCGCTCTTCCAAGACCTGGCTAATTTAAACGCGAAATATGAAGTTAATGATGACTACTACGATAGTGGGCCTAAAAGTTTCAAGCAACACGTGATCGAAAATAGTAAAGGCACATTGATCATGAAAGCTGATGAATGGAAATTAGAATGGTGCAAAGCGAAATCTTTCAATCAAACGATACGCCATCCTGGTTGCTTACCGCGAATAATTCAAAACAATTACTGCTACGGGCAATGCAATTCAATCTACATTCCAGGTGAAAGGCGCCTCGAAGGCTGCAACTCGTGTATGCCCAAGAGCTACGAAATGGCCGCTATAACTTTGCTTTGTCCATTCTCGAAACAAAAAAGGCACCATAAGCAAATTCAACTGATCTACTCCTGTTACTGCTACAATTGTCCGAAGCCTGTGTGACCGAGTCACTTGTACAAATCTGCTGCCAGCTCGCCAGGGCAAAGGACCTAAAATGAACGAGCTTTGAACTGCTGTCAGTTTTAGGCCAATTGGATACGCCAGGTTTTCAGCTGTGCTCTGGTTGCCGTAGACAATAGCATTGTAAATAAATTGCAAACAAAACCCAAGGGACTGAAAATGTAGTAGATAGTGTATATATCAGCATCATTGGCATCAAATTTTTAAAATGGTTCTGTAAATGTGTACGGAGTGGCCGAGTGGGTCAAAAAAGCTTTGTTGTTTTAAAACTCCCGGAAATTTAAAAAATCAACTAATGTTGAATTTGTTTTCGTGATGCCTTTGCATCGAACATCAAATTGAATTTAGAGATATTGACTATGCTACCAAAAGCTGTTACTTCATGAAATTATGAAAGTTTGTGAACTACCTGGTTTGGAAGCATGGTACGAAATTGCACGTAATAATACACAAGGCAGTTTTGTTTCGTTTGATAGAATTCTTCAAGATGATTAACTATTAAGAAATCAAAAATTAATGTGGAGTCGTAAGGCTAGGAATCCTAGGATTTTTAATGAATTCTTTCAAAAAAGGGGCAAGGGTCTTTGAATATACGAAATATCAAAATTCATTCAGTTCAttcagtactttattctaagtgaactggaaggatttttagctattcaaagataatttaggcccactgtgcatgccgcatccaggcatgggacccctagtctaacgtccattcggacggcgaagtgacttgcgaggtcaggcctttgagaggtcacccatccggagtttgacctcactcgatcgagcttaatttcagttacctgacggaaactgtatgagccgctcggccactcGAGCTGTTCACTTCGAACGAAGACGTAAGAACCATTGCAGGAAGCCATTTTTTAGATTTGATGCCAATGCGGTATATAACATGCTGTAAATAGCACCAATAATCCTTACAATACAATAATTTATCATTAGATCCGTGTAAATTCATATACATTACCGGATGCCTATCAGGCCCGGAGGTAATTTAACCTCCCTCTCCGCTCCGGCAGCACCAAGTTACTGAGTATCAAAACCACAAAAGTTATCTAAGTCTGTTTACCGTGGTCCGTCTGATAGATCCCTCTCCGATAGTTCCTGGATCTGCCATTCCAACATTCTGTAATGGAACATAAAAGGGAGAGAGAAGAGCGATGAGGAATTTCTGTCTCTCCCTCTTCTTTATTCCTTTACGGAACGTTGCAATGGCAGATCCGGAATTGGGTGGGTGGACTACAGGAAATAGACTTAGGGCAAGTTTGCCAGTATTTTGTAAATGGGAACGTAGGCAAGACCAATTTTCAGTAAAAGACAGCTATTCATAGGACTCAAAGACTAATCATTACGATAGTGACGGCCTTGTCTGTAGGATGTCCTAATAAATTCATTCTTCGTTTGCCCCTGTTTGCCTGGCTACTGTCAAAGAGCGAAATGTCCAATTTGTCTGTTTATCATATTTTTTTGATAGAAGAGATTTCAACCTAGAGTTGGATACGTAATTGAGTAAATCTGACAATTAGTTCTACATCTTTGAATTAACGTTTGCATTGACCCAACTGCACAAAAATAAGCTGAAAGTGAGATGATTTCCAAAATAAGATAGGGAAAATGAAATTTTAATGATCTTCAAAACAGCTAGCTTTTTCTGACACACCTATAGATCTTAGCATTTGAGAATTTGACGTTCAATCTTCCGAACATTCCCCTCTGTTTTGTGAAATTACTTTATTGTTGATGTGATAAAATATTCAAGATAAATTGTATGATAAAAG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03045 all species →	DAN	DAN domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004133 all species →	Domain	DAN	Interproscan
IPR006207 all species →	Domain	Cystine knot, C-terminal	Interproscan
IPR029034 all species →	Homologous_superfamily	Cystine-knot cytokine	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15283 all species →	GREMLIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan
GO:0009887 all species →	Biological Process	animal organ morphogenesis	Interproscan
GO:0036122 all species →	Molecular Function	BMP binding	Interproscan
GO:0038098 all species →	Biological Process	sequestering of BMP from receptor via BMP binding	Interproscan
GO:0048018 all species →	Molecular Function	receptor ligand activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23318	GREM; gremlin	-	TGF-beta signaling pathway	ko04350	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.