Gene detail

Detailed information of scaffold65.g77.t1 in Morbakka virulenta

Genomic Location: scaffold65:2802057...2840321
NR annotation: XP_047126960.1, transcription initiation factor TFIID subunit 1 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

scaffold65.g77.t1

GGCAAGAAATTTATTGAGGGAATTTGGAGTTACAGAAGAAGAGATAAAGGCTTTATCAAGGTGGGAAGTAATTGACAAAGTACGGACCATGTCAACAGAGGCTGCTAGGTCTGGTGGCGAGGGAGATATGAGTAAATTTGCAAGAGGGTCTCGCTTCACAGTAGCGGAGCATCAAGAAAAGTATAAAGAGGAATGTCAAAGGATATTTGATTTACAGAACAGAGTTTTGAGTTCAGACGCAGTCCTCTCCACAGATGAAGAAACAAGTGATGAAGAGACCAGTGACCTTGATGAACTTGGCAAAGATCTTGAAAGTATGCTGTCTAATAAGAAGACCTCATCTCAGCTATCGCATGATCATGAAGAAGTAGAACGGAAGGAGCTACAGAAACTCCTGAGTGAAGATCGTTCAGGAGACAAAGATCGTGAGGAAGCAAACAGATCTTTGGATGGTAGCAGACCACTTAGCGCGCTTTCCGGATCAAGAAGACAAGATGATGATGATTCTCAGTCGATCATTAGCTTAGACAATTCTCCTGGTAGACGACTATTAATACATAGAACCTTTAAGGAACGAGATCAAGAATATGTACGTACAGAGGTTGTCAAGAACCAAGCTGTTATTGATGCATATTTGAGAATTGTTACTCGTGATAAAAATTACAGGCAAGTCTTCGCCAGTCAAGATGAAAAACATAAAGAAGACATGCGCAGAGAAAGAAGAAGAATACAAGAACAGCTAAGACGAATAAAAAGAAATCAAGAGAAAGAAAAGTTAAGGGAGATGCAGAAACCGATGGCAGTCCCCAAAATACCATCAGATAAACCACTGAAAAACCTTAAATGTGGTGCTTGCGGTGGAGTTGGCCATATGAAGACCAATAAAATGTGCCCCAAATACCAAGAAACCGGTGGATATCAAGTTGCAATGACCGATGaagagttttcactAAATGGGGAAAAAACAAGTCGTGCTGATCAGctgtgtgaccccaagtgaccacctcagcattctcaactcagccacttccaactcagcttcctgcttctttgttgtcgctaccgtctcaagcccatatagcaaagctggccgcactaccgttttgtacacttttcctttcacttttggcaatatcttccggtcacataacacccctgttaccttcctccacccgttccagcctccttgtatcctcttcttcacttctctgtcgcatcccccatcgtattgcactgtggatccaaggtacttgaagtcttttgccttcattacatctgctccttgcatgcaaatcttgtcatcctctctcccattcacgaccaggtattcggtcttggccctgcttaccttcattccccttctttctagggcatatctccactcctccagttcttcttcggcctcgttcctggttttgttgcacagcacaatatcgtcagcaaacagcatactccatggtgcttctttcctgacttcatcagtgagtcgatccatgactattgcgaataggaaggggcttagagctgacccttggtggagtccgaccttgactcggaaccagtcagtcattcctgcagcacttcttacagccgtcgcactgtctttgtacatgtcttttactagccttacatacttttctgctactctggatgttctcatgcagtgccataattcctctctaggtaccctatcatacgctttttccaaatccacaaacacgcagtgcaattccttttgtccttctctgtgcttttccatcaggatgcgcagagcgaataacgcatctgttgtgcctcttcctggcatgaaactgtactgttccgggctgatctctacttcctctctcatccttgtatccaaaactctctcccacaacttcatagtgtggcacatcaacttgatgcccctgtagttgccacactcttgtgcatctcctttgttcttatatatagggatcaacacactcctcctccattcgcttggcatttcctctttctccagtatcctattgaagagcttcgtgagcacctctaaacccaggtcacctagacacttccatgcttcaattgggatgttgtctggccctacactctttccatttttcattttcttcaatgccttctttacttcacctttgtctatctttccaacatcgcgttcaactctctgggcttcttcaattctttcttctctgggattttctgtgttcatgaggccttcaaagtaacttttccacctttctaacacttcattctcatctgttaacagtcttccatctgcatctttgatgactctaacctgttgaatatcctttgaagccttgtccttttgcttcgcaatccgaaataaatccttttctccttcccttgtgttcagcctatcgtagagatcattgtatgcttcctcctttgccttggctacttcctgcttcgcttctcttcgtctagtctcgtattcccttttgtcttcctcttggcctgtcctgtcaaacactttctttgctttcctcttgttctggatactatcttgtactgcatcattccaccaccatgtttccttgtctggactcctacagcttgatgttgctcccagaactgccttggccgtttctcgaattttctcggtgagctcagtccatttttcaagtacatccgtggttgaactcagtgcttctactagctcccgattgaagttcctcctgcactcagcttctctcagtttccaccattttattcttggatcagatgtcctttttcttgttctcttggttttgatcatcaacttgcatattactaccttatgttgtgcagcaacacactctcctcccagtacaaagcagtcactgacttctttcagatgtcttcttttgtacactaggtagtccacttgc

Protein

Uniprot

Uniprot term	Description
Q8IZX4	Transcription initiation factor TFIID subunit 1-like OS=Homo sapiens OX=9606 GN=TAF1L PE=1 SV=1
Q60544	Transcription initiation factor TFIID subunit 1 OS=Mesocricetus auratus OX=10036 GN=TAF1 PE=2 SV=1
P21675	Transcription initiation factor TFIID subunit 1 OS=Homo sapiens OX=9606 GN=TAF1 PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15288	zf-CCHC_6	Zinc knuckle	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR040240	Family	Transcription initiation factor TFIID subunit 1	Interproscan
IPR041670	Domain	Zinc knuckle	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13900	TRANSCRIPTION INITIATION FACTOR TFIID	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004402	Molecular Function	histone acetyltransferase activity	Interproscan
GO:0005669	Cellular Component	transcription factor TFIID complex	Interproscan
GO:0006366	Biological Process	transcription by RNA polymerase II	Interproscan
GO:0016251	Molecular Function	RNA polymerase II general transcription initiation factor activity	Interproscan
GO:0017025	Molecular Function	TBP-class protein binding	Interproscan
GO:0051123	Biological Process	RNA polymerase II preinitiation complex assembly	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K10847	XPA; DNA-repair protein complementing XP-A cells	-	DNA repair and recombination proteins	ko03400	deepkoala