Gene detail

Detailed information of scaffold655.g3.t1 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold655:97413...99954
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold655.g3.t1

nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctgaaatgctgggtatgatgtttatcaccgagcggtttcgccccggtgcggatctggacaacctgtgcagcgcctttgccgatggccagcggggacggttccgcatcctgaacaccaaaaaggatggcgccccattcctcgatgagatcagcctgaccccgatccgcagcgattctggaacgctacgctaccttttggccacccacacggatgtcaccgaacacgcgcaaacgcagctggtggtgcatcagctcgaacaacgtatcgaatccgcaatggaggctgtcaccagcgctattctggcaaccggcgccgacggagaggtgctttataccaacaccgccatgcgcagcctcctgcacgaattatacggcaccgagatgcgcccacatcaggccatcgccacctttatcaaaagcgtcgaagacagtgatcagcgggtcgaggtcacctgcagcgacggaaccatcttccttgtgcgcagctttgacagcagcgaaggcggtcgcgtcatcaccggcaccgatatcacggacatcaagcgcacaaaacgtgtgctgcaacagcgcgccgccgccatggacagcaccgccgagggcatcgccattgtcgagcgcaccgcccgcatcaactatgcaaaccctgcctttgcccgcatctttggcacagaaaatcccgacgacatcattggggagagctggtgcaaagcctttcgtgacgaagacgtcgcccgcctctcctccgaggttcgcccaaaggtcgcaaccgaaggctccgcgcagatcgaaatgcgggccaacttggcggatggggagcgcacgttcgaggtctgcgtcacccgcattgacgaaaaaatgcgcatcgtggtggcgcgcgacatcacccgccgaattgagtatgaaagagcccgcaccagctttgaacaaaagctgcatgacttcgagaaaaacgaaagcataggccgtctggccgctggtgttgcacatgatttcaataacttgctggcggtgatcaacgggcactccgctttgctgaatgaccgcacgccgccggataaggtccagctttattccaaccgcatcagcgaggcatcttcgcgcgcggcaaagatgatcaaccgcttccttgatcttggcatgtccaccgatcagcaaagcatgatcgacctgcgcaatttgttgacggaatctcaggatctgctgcacagcgcactgtctgccgacacacgctttacgctggatctggacgaagatgagatggagatgctctgctcgccgtccgatctgctgcgtgtggcgctgaaccttgtgcaaaacgctcaggacgcattgggtaacaagcccggtcgcatccaccaatgcctcaaacgcctgcccggcgttgatctgatggatctgcagcttgatgtgggacagatcgacccggaccagatctatgcgcgctacgccgtcgaggacagcggcagcggcattcccagcgacgtgcgggagcgtctgtttaatgaacattgctccaccaaaggccagcgcggcagtggcattggcatgatggcaatcgctgaaatcatacgaaaccacgacggtgctattcgtcttttgaccgaagaaggcaaaggcacgcgggtggaaatcttcctgccgctctcagattactctctcacccggatcagcgaacaggacatcggttccgtgcggctcgacgggcagttggtgttgctggtggatgatgatgcgcaggtcgctgaatcgattgccgcctttctggagcgcctcggggccgaggtcagcatctgcctgcaccccgatgaggctctcgaagccattgaagaagatccgggcctgtggtccttccttgtgaccgactacaatatgccgggacaaaacggcggccagttggcgcgggcggcaaaaaccgcagatggggatttgccgatcgtcatcgtcacagcgctcgcacgcaagctctctgatcccaacctgaccgaagatgtgatcagcgccttgcttgggaaacccgttgatctcaacacgctcgcccatttgatcgcgcaacacggtcgcatcaacagcgccgagtccacatagcagccccttcgccgcccgcagaacgccagcgaagaccgcaaaacagaatattaggaaacatatgcgaccctttggggatgcgcactgccctgctgtaaggagaactccctgtgttgctgaaaccttcgagtgtttcactcaagctcaaactacccgttctgatggtcgccctcacggtggcatttgtggtgacggtgtcgttcctgatctatacgatggcagaacgcagcatccgggaaaatgtcgcctccgccaaagcctccaaggcacaggccggggcgcaggcgctcagtttcagcattggcgcagcacagcgcgatgtggcaaatctcgccgccctgcccaccacgtttcgcgcaatcaacaactttgagcgcg

Transcript

scaffold655.g3.t1

NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGAAATGCTGGGTATGATGTTTATCACCGAGCGGTTTCGCCCCGGTGCGGATCTGGACAACCTGTGCAGCGCCTTTGCCGATGGCCAGCGGGGACGGTTCCGCATCCTGAACACCAAAAAGGATGGCGCCCCATTCCTCGATGAGATCAGCCTGACCCCGATCCGCAGCGATTCTGGAACGCTACGCTACCTTTTGGCCACCCACACGGATGTCACCGAACACGCGCAAACGCAGCTGGTGGTGCATCAGCTCGAACAACGTATCGAATCCGCAATGGAGGCTGTCACCAGCGCTATTCTGGCAACCGGCGCCGACGGAGAGGTGCTTTATACCAACACCGCCATGCGCAGCCTCCTGCACGAATTATACGGCACCGAGATGCGCCCACATCAGGCCATCGCCACCTTTATCAAAAGCGTCGAAGACAGTGATCAGCGGGTCGAGGTCACCTGCAGCGACGGAACCATCTTCCTTGTGCGCAGCTTTGACAGCAGCGAAGGCGGTCGCGTCATCACCGGCACCGATATCACGGACATCAAGCGCACAAAACGTGTGCTGCAACAGCGCGCCGCCGCCATGGACAGCACCGCCGAGGGCATCGCCATTGTCGAGCGCACCGCCCGCATCAACTATGCAAACCCTGCCTTTGCCCGCATCTTTGGCACAGAAAATCCCGACGACATCATTGGGGAGAGCTGGTGCAAAGCCTTTCGTGACGAAGACGTCGCCCGCCTCTCCTCCGAGGTTCGCCCAAAGGTCGCAACCGAAGGCTCCGCGCAGATCGAAATGCGGGCCAACTTGGCGGATGGGGAGCGCACGTTCGAGGTCTGCGTCACCCGCATTGACGAAAAAATGCGCATCGTGGTGGCGCGCGACATCACCCGCCGAATTGAGTATGAAAGAGCCCGCACCAGCTTTGAACAAAAGCTGCATGACTTCGAGAAAAACGAAAGCATAGGCCGTCTGGCCGCTGGTGTTGCACATGATTTCAATAACTTGCTGGCGGTGATCAACGGGCACTCCGCTTTGCTGAATGACCGCACGCCGCCGGATAAGGTCCAGCTTTATTCCAACCGCATCAGCGAGGCATCTTCGCGCGCGGCAAAGATGATCAACCGCTTCCTTGATCTTGGCATGTCCACCGATCAGCAAAGCATGATCGACCTGCGCAATTTGTTGACGGAATCTCAGGATCTGCTGCACAGCGCACTGTCTGCCGACACACGCTTTACGCTGGATCTGGACGAAGATGAGATGGAGATGCTCTGCTCGCCGTCCGATCTGCTGCGTGTGGCGCTGAACCTTGTGCAAAACGCTCAGGACGCATTGGGTAACAAGCCCGGTCGCATCCACCAATGCCTCAAACGCCTGCCCGGCGTTGATCTGATGGATCTGCAGCTTGATGTGGGACAGATCGACCCGGACCAGATCTATGCGCGCTACGCCGTCGAGGACAGCGGCAGCGGCATTCCCAGCGACGTGCGGGAGCGTCTGTTTAATGAACATTGCTCCACCAAAGGCCAGCGCGGCAGTGGCATTGGCATGATGGCAATCGCTGAAATCATACGAAACCACGACGGTGCTATTCGTCTTTTGACCGAAGAAGGCAAAGGCACGCGGGTGGAAATCTTCCTGCCGCTCTCAGATTACTCTCTCACCCGGATCAGCGAACAGGACATCGGTTCCGTGCGGCTCGACGGGCAGTTGGTGTTGCTGGTGGATGATGATGCGCAGGTCGCTGAATCGATTGCCGCCTTTCTGGAGCGCCTCGGGGCCGAGGTCAGCATCTGCCTGCACCCCGATGAGGCTCTCGAAGCCATTGAAGAAGATCCGGGCCTGTGGTCCTTCCTTGTGACCGACTACAATATGCCGGGACAAAACGGCGGCCAGTTGGCGCGGGCGGCAAAAACCGCAGATGGGGATTTGCCGATCGTCATCGTCACAGCGCTCGCACGCAAGCTCTCTGATCCCAACCTGACCGAAGATGTGATCAGCGCCTTGCTTGGGAAACCCGTTGATCTCAACACGCTCGCCCATTTGATCGCGCAACACGGTCGCATCAACAGCGCCGAGTCCACATAGCAGCCCCTTCGCCGCCCGCAGAACGCCAGCGAAGACCGCAAAACAGAATATTAGGAAACATATGCGACCCTTTGGGGATGCGCACTGCCCTGCTGTAAGGAGAACTCCCTGTGTTGCTGAAACCTTCGAGTGTTTCACTCAAGCTCAAACTACCCGTTCTGATGGTCGCCCTCACGGTGGCATTTGTGGTGACGGTGTCGTTCCTGATCTATACGATGGCAGAACGCAGCATCCGGGAAAATGTCGCCTCCGCCAAAGCCTCCAAGGCACAGGCCGGGGCGCAGGCGCTCAGTTTCAGCATTGGCGCAGCACAGCGCGATGTGGCAAATCTCGCCGCCCTGCCCACCACGTTTCGCGCAATCAACAACTTTGAGCGCG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08448 all species →	PAS_4	PAS fold	Domain	Interproscan
PF00072 all species →	Response_reg	Response regulator receiver domain	Domain	Interproscan
PF00512 all species →	HisKA	His Kinase A (phospho-acceptor) domain	Domain	Interproscan
PF02518 all species →	HATPase_c	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase	Domain	Interproscan
PF13426 all species →	PAS_9	PAS domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001610 all species →	Repeat	PAC motif	Interproscan
IPR013656 all species →	Domain	PAS fold-4	Interproscan
IPR003661 all species →	Domain	Signal transduction histidine kinase, dimerisation/phosphoacceptor domain	Interproscan
IPR000014 all species →	Domain	PAS domain	Interproscan
IPR036890 all species →	Homologous_superfamily	Histidine kinase/HSP90-like ATPase superfamily	Interproscan
IPR011006 all species →	Homologous_superfamily	CheY-like superfamily	Interproscan
IPR003594 all species →	Domain	Histidine kinase/HSP90-like ATPase	Interproscan
IPR036097 all species →	Homologous_superfamily	Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily	Interproscan
IPR001789 all species →	Domain	Signal transduction response regulator, receiver domain	Interproscan
IPR004358 all species →	Domain	Signal transduction histidine kinase-related protein, C-terminal	Interproscan
IPR035965 all species →	Homologous_superfamily	PAS domain superfamily	Interproscan
IPR000700 all species →	Domain	PAS-associated, C-terminal	Interproscan
IPR005467 all species →	Domain	Histidine kinase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43065 all species →	SENSOR HISTIDINE KINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000155 all species →	Molecular Function	phosphorelay sensor kinase activity	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0000160 all species →	Biological Process	phosphorelay signal transduction system	Interproscan
GO:0016310 all species →	Biological Process	phosphorylation	Interproscan
GO:0016772 all species →	Molecular Function	transferase activity, transferring phosphorus-containing groups	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for scaffold655.g3.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.