Gene detail

Detailed information of scaffold655.g4.t1 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold655:115496...130119
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold655.g4.t1

gttccacgtatccgggccaacgccgcgaatgtcgcagaccgtcagcagcaacaagagatccagccgtttgaccgtctgcaccgccttggcaaaatcgcgcaccgtgcgcgggtcggcaatgtcgcgtttctgtgcggtgtccgacatcagcagatggtagcgcaccagccattccaccgtctcggattcggatttgttgagccccagccgaggcgcaaccttgcgggcgatctgcgcgccaagaatagagtggtcctgcggacgtcccttgccgatgtcatgcagcagcatggcgatgatcagcaccttgcgattgacgccttgtttgatcagcgaggacgacagcggcagttcatcctccagctcgccccgttcaatggcagagaagttggagatcacctggatcgtgtgctcatccaccgtgtaggagtgatacatgttgaactgcatcatcgccacaatcggctcgaactccgggatgaaggtcgacagaacccccagttcattcatacgccgcagcacgcgctccgggttgccgtgtttcagcagcaggtcgatgaagatccgccgcgcatccgggttgttgcgcatttcgtcatcaatcagatgcaggttgccgcgcgccagtcgcatgctgtcaggatgcaggaggaggccggtgcgcagggcttcttcgaacatacgcaacaggttcagcttgtcttgcaggaaactctcgggatcggcaatttccagacgattgtgattgatcttatagccgggcttgatgcgcggtttgcgccggaagatgcgctccagcagcggttcgctcttgagttggctgtcttcgagtttggagagcaggatgcgggtcacatcgcccacttgcgtggcgtgacggaaatagtcctgcatgaagacctcgaccgcgcgccggccggaggtgtcctgatagcccatgcgctcggcgacctgcacctgcatgtcaaaggtcagttgttcggtggcgcgccccgcactcagatgcagatgcgcccgcacggcccagaggaagttttcggcctttgcaaagaaatcaaattcttcggggcgaaacaggccgaggggcaccagttcggccacgtcctgcaccttgtagagatatttggcgatccagaacagcgattgcagatcgcgcaagccgcctttgccctccttgacgttgggctccaccatgtagcgctcgccctgcttgaggtggcgggcgtcgcgttcggccagtttggcgtcgatgaactcggcggcgtccttggcaaagagatcttttgccaaacgctcttccaactctgccgcgagggggccgtgacctgccagaaaccggtgctccagcatggcggtccggatggtgaaatcctcagagccgaggcggatgcagtccttgatggtgcggctggaatggccgaccttcagccgcagatcccacaggatgtagagcatggattcaatcacgctctccgcccaggcggtgatcttatagggcgtcaggaacagcaggtcgacgtcggaaaacggcgccatctcaccccggccatagccccccaccgcaaagacagaaatccgttcgccggtggtgggcgtggcgatggggtgcagcacgtccacggcggccatgagcgccgtggtgaccaacccatcggtcagatagagacagagttggccttggcctacgcctggcgggatcatcaggatgtgcaggcgctgcatcgcctgatcacggcttacatgcggcttgcggtctcgatggcctcaaagttccgtcgttacggtgcgccgatgaacgatctgatccaagaggcggggttgggcctgatgaaggctgcggagaaattcgatcccgaccgtggggtgcgcttctcgacatatgcggtctggtggatcaaagcatcgattcaggactatgtgatgcggaactggtcgatggtgcgcacagggtcgacatcatcacagaagtcactgtttttcaacatgcgccgcgtgcaagcgcagctcgaacgcgaagcggagagtgatggcgtggaattggatcgccacaagctgcaccagatggttgccgaagaaatcggcgtgcccctgcgcgatgtcgagatgatggatggtcgccttgcgggtgcggatttttcgctgaacgctgtgcaatcagcagatgaggacgggcgcgaatggatcgacgcgctggaagatgacagcgaacaggcggccgagcgggtcgcggcagatcatgatcgcagacagctgcgtgagtggctggtgacggcgctcaacgggctgaatgaacgtgagcgctttatcgtgcgcgaacgcaagctgcgcgaggagtcccgcacgctcgaaagtctcgggaacgagcttggcctgtccaaagagcgtgtccgccaactggaggcggcggcattccttaagatgagaaagagccttgaagagctggtgcaggagttgggggagcagaattcggcctcttatgtcatagcccagcacatgtccccgacacataaaagcatgctgagcgcattgatcgcgcgcgaaacccggctgccggtgaaggaactgaccgccgaagaggacatctggccggaggtgaataccatctatgtggtgatgcccggtcaggatgtggtgatcgccaaagggggcaagctgggattgcgggaaccggatggccagcgtggacgtcccaaaccgctggccgaccgtctgtttaagaccatggcggaggaatacggcgagaactgtgccgccattgtcctgtcgggtactggcagcgatggcagctacggggtgcgtgccattcgtgaggtgggcgggatcaccattgcacaggatccagacagttccaaatattccggcatgccgtcgtcggccctgcaaaccggatgcgtcgatctcacgctcttgccgagcgaaattggcgagcatttgggcaagattctctcgcgtccgcgtgattttaccgaactgcaggaattgcaccacaaaccgcacaagctctctgatctgtttcagatcctgacggcgcgcaccggggtggatttccgcgaatataaggcctccaccatcaatcgccgtatcgcgcggcgcatgcttgcattggggttttccgaatataacgcctatgtggatttctgccgccgtgatctggcggaggtcgatgcgctctacaaagatctgatgatttcggtgacgcggttctttcgcgacccgcagcagtttgaggccctcaagtccaatatcgaggctatggtctcgaaaatggatgcctctgaccagcgcaccgtgcgcgtctgggtgtcgggctgcgccaccggtgaagaggcctattcggttgcaatcctctttttggaggcgatgggggggctggaaaaagtggcgcaacgccgcctgcaggtgtttgccaccgatatcgaccagcaggcattggatgtggcgcggcggggggagtatccgatctctgcggtcagcgacatcccggacgaactggtggatcgctactttgttgagcgtaccgaaaccattgaggtcaaaaaggcgctgcgggcatttgttctgttttcacgccacaatgtcattcaggatccgccgtttaccaatcttgactgcatcagcctgcgcaacctgttgatctatttcaatggcacccttcaggataaggtgctggcgcgggttgggtatgctctggttccagacggattgctgtttttgggcgccgccgagaccgtggggtcgatggaaaacatctttgaacccactaccccctccgaccggatttaccgcaagcgtgcaatgacgcgcaaaccggcgttacagtcttttctggaagagacttctccgcgccctgcgcaagagcagacctcggttcgtttcttgtcggataagaaccggcatcacggctcgacccgccagtttgatagcctgatccgggtgcttgcacccaacgggttccttgcgcgctcgacgggggcgatcctgcggatcattggcgatatttcttatgtgacggcgcttacggaaagctcggggttgcaagtcgatctgaagatcctgattccgtccctgcgcagcgaggcctctagcctcatcaacgtcgcgttgcggtctcgtggtgtgcgcagtgggcaatggcacccgttgcctcggtccgatcatgaacaggtgcgcctgacctgctatccgattgccgcacccagtgatggtgacggcgatggggccagcgtcgtgctgatcgcggtagagacccggatcaaggaagagcaaaccgcaagccccgaacatctcgacccgcaagagcaggaccgctacatccgtcagatcgaggacgaggtgatttcgacccgcgaagccttgcagcaaaccatcgaagagttgcagaccgcaaatgaggaactgcagtccgtcaacgaggaaatgcaggctgcgaacgaggaattgcaatccaccaacgaggagcttgagacctcgaatgaggaattgcagtccaccaacgaggaactgatcaccgtcaacgaggaaattcaggtcaactcaaccgaaattcagcatgtgagtgcggaattgaccgccgtgttgcgcgccaatccttttgtcatgatcgtggtggatcaggcgctgcaggttcggcatgcatcgcggcaggctatgaccatgttcgaactggattcgttgccaaaatccggcattcacatcagccaatgtgcgccggtgaaagggttgccggatctgacatcgcggatttcgcaggtgtttcgctccagcgcaccgctggtcgaaaacgctgaatttggtggggaaaaccacgagatgacctttaccccgttccgccaaaaggacggccgagagctgattggtgtggccgttactatcgtctgaggtcgcgcgtgaaagctgtcgcgtgcggggatgtgcggccgcttcaagaaccatgtggcaattgcctgccgttccggggcataaacgctgcgcacaggt

Transcript

scaffold655.g4.t1

GTTCCACGTATCCGGGCCAACGCCGCGAATGTCGCAGACCGTCAGCAGCAACAAGAGATCCAGCCGTTTGACCGTCTGCACCGCCTTGGCAAAATCGCGCACCGTGCGCGGGTCGGCAATGTCGCGTTTCTGTGCGGTGTCCGACATCAGCAGATGGTAGCGCACCAGCCATTCCACCGTCTCGGATTCGGATTTGTTGAGCCCCAGCCGAGGCGCAACCTTGCGGGCGATCTGCGCGCCAAGAATAGAGTGGTCCTGCGGACGTCCCTTGCCGATGTCATGCAGCAGCATGGCGATGATCAGCACCTTGCGATTGACGCCTTGTTTGATCAGCGAGGACGACAGCGGCAGTTCATCCTCCAGCTCGCCCCGTTCAATGGCAGAGAAGTTGGAGATCACCTGGATCGTGTGCTCATCCACCGTGTAGGAGTGATACATGTTGAACTGCATCATCGCCACAATCGGCTCGAACTCCGGGATGAAGGTCGACAGAACCCCCAGTTCATTCATACGCCGCAGCACGCGCTCCGGGTTGCCGTGTTTCAGCAGCAGGTCGATGAAGATCCGCCGCGCATCCGGGTTGTTGCGCATTTCGTCATCAATCAGATGCAGGTTGCCGCGCGCCAGTCGCATGCTGTCAGGATGCAGGAGGAGGCCGGTGCGCAGGGCTTCTTCGAACATACGCAACAGGTTCAGCTTGTCTTGCAGGAAACTCTCGGGATCGGCAATTTCCAGACGATTGTGATTGATCTTATAGCCGGGCTTGATGCGCGGTTTGCGCCGGAAGATGCGCTCCAGCAGCGGTTCGCTCTTGAGTTGGCTGTCTTCGAGTTTGGAGAGCAGGATGCGGGTCACATCGCCCACTTGCGTGGCGTGACGGAAATAGTCCTGCATGAAGACCTCGACCGCGCGCCGGCCGGAGGTGTCCTGATAGCCCATGCGCTCGGCGACCTGCACCTGCATGTCAAAGGTCAGTTGTTCGGTGGCGCGCCCCGCACTCAGATGCAGATGCGCCCGCACGGCCCAGAGGAAGTTTTCGGCCTTTGCAAAGAAATCAAATTCTTCGGGGCGAAACAGGCCGAGGGGCACCAGTTCGGCCACGTCCTGCACCTTGTAGAGATATTTGGCGATCCAGAACAGCGATTGCAGATCGCGCAAGCCGCCTTTGCCCTCCTTGACGTTGGGCTCCACCATGTAGCGCTCGCCCTGCTTGAGGTGGCGGGCGTCGCGTTCGGCCAGTTTGGCGTCGATGAACTCGGCGGCGTCCTTGGCAAAGAGATCTTTTGCCAAACGCTCTTCCAACTCTGCCGCGAGGGGGCCGTGACCTGCCAGAAACCGGTGCTCCAGCATGGCGGTCCGGATGGTGAAATCCTCAGAGCCGAGGCGGATGCAGTCCTTGATGGTGCGGCTGGAATGGCCGACCTTCAGCCGCAGATCCCACAGGATGTAGAGCATGGATTCAATCACGCTCTCCGCCCAGGCGGTGATCTTATAGGGCGTCAGGAACAGCAGGTCGACGTCGGAAAACGGCGCCATCTCACCCCGGCCATAGCCCCCCACCGCAAAGACAGAAATCCGTTCGCCGGTGGTGGGCGTGGCGATGGGGTGCAGCACGTCCACGGCGGCCATGAGCGCCGTGGTGACCAACCCATCGGTCAGATAGAGACAGAGTTGGCCTTGGCCTACGCCTGGCGGGATCATCAGGATGTGCAGGCGCTGCATCGCCTGATCACGGCTTACATGCGGCTTGCGGTCTCGATGGCCTCAAAGTTCCGTCGTTACGGTGCGCCGATGAACGATCTGATCCAAGAGGCGGGGTTGGGCCTGATGAAGGCTGCGGAGAAATTCGATCCCGACCGTGGGGTGCGCTTCTCGACATATGCGGTCTGGTGGATCAAAGCATCGATTCAGGACTATGTGATGCGGAACTGGTCGATGGTGCGCACAGGGTCGACATCATCACAGAAGTCACTGTTTTTCAACATGCGCCGCGTGCAAGCGCAGCTCGAACGCGAAGCGGAGAGTGATGGCGTGGAATTGGATCGCCACAAGCTGCACCAGATGGTTGCCGAAGAAATCGGCGTGCCCCTGCGCGATGTCGAGATGATGGATGGTCGCCTTGCGGGTGCGGATTTTTCGCTGAACGCTGTGCAATCAGCAGATGAGGACGGGCGCGAATGGATCGACGCGCTGGAAGATGACAGCGAACAGGCGGCCGAGCGGGTCGCGGCAGATCATGATCGCAGACAGCTGCGTGAGTGGCTGGTGACGGCGCTCAACGGGCTGAATGAACGTGAGCGCTTTATCGTGCGCGAACGCAAGCTGCGCGAGGAGTCCCGCACGCTCGAAAGTCTCGGGAACGAGCTTGGCCTGTCCAAAGAGCGTGTCCGCCAACTGGAGGCGGCGGCATTCCTTAAGATGAGAAAGAGCCTTGAAGAGCTGGTGCAGGAGTTGGGGGAGCAGAATTCGGCCTCTTATGTCATAGCCCAGCACATGTCCCCGACACATAAAAGCATGCTGAGCGCATTGATCGCGCGCGAAACCCGGCTGCCGGTGAAGGAACTGACCGCCGAAGAGGACATCTGGCCGGAGGTGAATACCATCTATGTGGTGATGCCCGGTCAGGATGTGGTGATCGCCAAAGGGGGCAAGCTGGGATTGCGGGAACCGGATGGCCAGCGTGGACGTCCCAAACCGCTGGCCGACCGTCTGTTTAAGACCATGGCGGAGGAATACGGCGAGAACTGTGCCGCCATTGTCCTGTCGGGTACTGGCAGCGATGGCAGCTACGGGGTGCGTGCCATTCGTGAGGTGGGCGGGATCACCATTGCACAGGATCCAGACAGTTCCAAATATTCCGGCATGCCGTCGTCGGCCCTGCAAACCGGATGCGTCGATCTCACGCTCTTGCCGAGCGAAATTGGCGAGCATTTGGGCAAGATTCTCTCGCGTCCGCGTGATTTTACCGAACTGCAGGAATTGCACCACAAACCGCACAAGCTCTCTGATCTGTTTCAGATCCTGACGGCGCGCACCGGGGTGGATTTCCGCGAATATAAGGCCTCCACCATCAATCGCCGTATCGCGCGGCGCATGCTTGCATTGGGGTTTTCCGAATATAACGCCTATGTGGATTTCTGCCGCCGTGATCTGGCGGAGGTCGATGCGCTCTACAAAGATCTGATGATTTCGGTGACGCGGTTCTTTCGCGACCCGCAGCAGTTTGAGGCCCTCAAGTCCAATATCGAGGCTATGGTCTCGAAAATGGATGCCTCTGACCAGCGCACCGTGCGCGTCTGGGTGTCGGGCTGCGCCACCGGTGAAGAGGCCTATTCGGTTGCAATCCTCTTTTTGGAGGCGATGGGGGGGCTGGAAAAAGTGGCGCAACGCCGCCTGCAGGTGTTTGCCACCGATATCGACCAGCAGGCATTGGATGTGGCGCGGCGGGGGGAGTATCCGATCTCTGCGGTCAGCGACATCCCGGACGAACTGGTGGATCGCTACTTTGTTGAGCGTACCGAAACCATTGAGGTCAAAAAGGCGCTGCGGGCATTTGTTCTGTTTTCACGCCACAATGTCATTCAGGATCCGCCGTTTACCAATCTTGACTGCATCAGCCTGCGCAACCTGTTGATCTATTTCAATGGCACCCTTCAGGATAAGGTGCTGGCGCGGGTTGGGTATGCTCTGGTTCCAGACGGATTGCTGTTTTTGGGCGCCGCCGAGACCGTGGGGTCGATGGAAAACATCTTTGAACCCACTACCCCCTCCGACCGGATTTACCGCAAGCGTGCAATGACGCGCAAACCGGCGTTACAGTCTTTTCTGGAAGAGACTTCTCCGCGCCCTGCGCAAGAGCAGACCTCGGTTCGTTTCTTGTCGGATAAGAACCGGCATCACGGCTCGACCCGCCAGTTTGATAGCCTGATCCGGGTGCTTGCACCCAACGGGTTCCTTGCGCGCTCGACGGGGGCGATCCTGCGGATCATTGGCGATATTTCTTATGTGACGGCGCTTACGGAAAGCTCGGGGTTGCAAGTCGATCTGAAGATCCTGATTCCGTCCCTGCGCAGCGAGGCCTCTAGCCTCATCAACGTCGCGTTGCGGTCTCGTGGTGTGCGCAGTGGGCAATGGCACCCGTTGCCTCGGTCCGATCATGAACAGGTGCGCCTGACCTGCTATCCGATTGCCGCACCCAGTGATGGTGACGGCGATGGGGCCAGCGTCGTGCTGATCGCGGTAGAGACCCGGATCAAGGAAGAGCAAACCGCAAGCCCCGAACATCTCGACCCGCAAGAGCAGGACCGCTACATCCGTCAGATCGAGGACGAGGTGATTTCGACCCGCGAAGCCTTGCAGCAAACCATCGAAGAGTTGCAGACCGCAAATGAGGAACTGCAGTCCGTCAACGAGGAAATGCAGGCTGCGAACGAGGAATTGCAATCCACCAACGAGGAGCTTGAGACCTCGAATGAGGAATTGCAGTCCACCAACGAGGAACTGATCACCGTCAACGAGGAAATTCAGGTCAACTCAACCGAAATTCAGCATGTGAGTGCGGAATTGACCGCCGTGTTGCGCGCCAATCCTTTTGTCATGATCGTGGTGGATCAGGCGCTGCAGGTTCGGCATGCATCGCGGCAGGCTATGACCATGTTCGAACTGGATTCGTTGCCAAAATCCGGCATTCACATCAGCCAATGTGCGCCGGTGAAAGGGTTGCCGGATCTGACATCGCGGATTTCGCAGGTGTTTCGCTCCAGCGCACCGCTGGTCGAAAACGCTGAATTTGGTGGGGAAAACCACGAGATGACCTTTACCCCGTTCCGCCAAAAGGACGGCCGAGAGCTGATTGGTGTGGCCGTTACTATCGTCTGAGGTCGCGCGTGAAAGCTGTCGCGTGCGGGGATGTGCGGCCGCTTCAAGAACCATGTGGCAATTGCCTGCCGTTCCGGGGCATAAACGCTGCGCACAGGT

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04545 all species →	Sigma70_r4	Sigma-70, region 4	Domain	Interproscan
PF03705 all species →	CheR_N	CheR methyltransferase, all-alpha domain	Domain	Interproscan
PF04542 all species →	Sigma70_r2	Sigma-70 region 2	Domain	Interproscan
PF01739 all species →	CheR	CheR methyltransferase, SAM binding domain	Domain	Interproscan
PF01339 all species →	CheB_methylest	CheB methylesterase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000673 all species →	Domain	Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase	Interproscan
IPR013325 all species →	Homologous_superfamily	RNA polymerase sigma factor, region 2	Interproscan
IPR000780 all species →	Domain	MCP methyltransferase, CheR-type	Interproscan
IPR029063 all species →	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan
IPR014284 all species →	Domain	RNA polymerase sigma-70 like domain	Interproscan
IPR013324 all species →	Homologous_superfamily	RNA polymerase sigma factor, region 3/4-like	Interproscan
IPR050903 all species →	Family	Bacterial Chemotaxis Protein Methyltransferase	Interproscan
IPR036804 all species →	Homologous_superfamily	Chemotaxis receptor methyltransferase CheR, N-terminal domain superfamily	Interproscan
IPR007630 all species →	Domain	RNA polymerase sigma-70 region 4	Interproscan
IPR022641 all species →	Domain	Chemotaxis receptor methyltransferase CheR, N-terminal	Interproscan
IPR007627 all species →	Domain	RNA polymerase sigma-70 region 2	Interproscan
IPR035909 all species →	Homologous_superfamily	Methylesterase CheB, C-terminal	Interproscan
IPR022642 all species →	Domain	MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24422 all species →	CHEMOTAXIS PROTEIN METHYLTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000156 all species →	Molecular Function	phosphorelay response regulator activity	Interproscan
GO:0000160 all species →	Biological Process	phosphorelay signal transduction system	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006935 all species →	Biological Process	chemotaxis	Interproscan
GO:0008984 all species →	Molecular Function	protein-glutamate methylesterase activity	Interproscan
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006352 all species →	Biological Process	DNA-templated transcription initiation	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0008757 all species →	Molecular Function	S-adenosylmethionine-dependent methyltransferase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for scaffold655.g4.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.