Gene detail

Detailed information of scaffold660.g3.t1 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold660:24885...29384
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold660.g3.t1

tagccagcttgcaagcaacctcgtccccggggccttttgtcatacctactaaacatcgctcgtgacaagcgagctatcatgtgacctgtcgccagagatgtgtggaaaatgaaaatcagaatatgttaatgcgcctgcgcattgcatcattgcaatccaagatggaggctcacgaaatggctttgcagggggacgagaaaaagaatgcatttcaagacgatgattttgaggacgatgaagaagacgaagagcccaaactgaaatatgaaagaattggcaatgcagtgcaagaaatattacaacaagatgcagcgagttgcatggctgttcaccacaaatttttggccttaggaacacactggggtgttgtccatgtcttagaccatcaaggaaacaatatcaggaataaagaattcccatctcatacaacaacagtgaaccaaattagcatcgacaatcatggagaatatgttggaagttgttcagaagatggcagagtggttattaatggcctttatagctcagagaataacatacagcaaatgttcgactgccccattagagcacttgcattgcatcctgattatggcaagaaaggaaacaggcagtatgttattggggtgggagagaagatgctgctatatgagaaaagctggctcagaaataagaatactgttctctactctggaacagggtatataaggacaatgaaatggaagggtaactttcttgcatggggggattcacaaggggttgaggtttatgatgtaaacagaagagtacgcattgcacatattgagaaaaagtctaaaaatccaagagatgatttatataggtgtaatctctgctggaaagatgatcgcacactcctaattgcatgggcggaatatatccaaattggggttgtcaaggaacgcgaatcaaaagataaacaaatggcatggcaaacaggaggagaattaccccccttgtgtgttgagctcacaaatgtttttcacacagatttctatgcatgtggaattgctccatttggaagtgagctggtcgtgttgtcgtattttgccaatcaaggagaacatggtattccagatagaggacaagcatcaagaccacagcttttgatactcagcccacaagggcttgaaacatacattgaatcatcaacagatgctctttcaatccgaggctttgaagaatatcattcaaataattacttcctggagaatgtacaagaggaaagtctgttctacattgtgagtccaaaggatattgtgttggccagaccaagagatatggatgatcatataacatggctgatggaaagagatatgttcgaagaagcgttagctgatgcagtgaaacatgaacatcttctcaagacgcataacgtgctgagaatttggaagcaatacatgaataatcttattgaagcaaagaaatacaaagaagctgcgtctttgtgcaagaagattattggagataacaaagatctttgggaggaagaagtctacaggtttgcaaaacacaggcaattaaaggcaatcactccattgattccatacaagaagccaagattaagtcatacaatttatgagatgattttgaacgagtacttgcaaacagatgtggttggctttcagaatctaatcaaagaatggccatcagatgtgtacagaagtgagacaataatctacgtcctgtcgtcaaagtcgaaagaagagccaaataacaagatcctgctgcagacactaggcacactttatgcacaggagaagaagtatggcaaaggccttgcaatctatttgaagcttggagatgccggtgtctttgacatgatcgatgagcacaatctggtcgagtttgtgaaagataagattttgaatttgatggagattgatgacaacaaagcggtcaagctcttgatagacaatattgagacaatcaatgttgagcatgttgttaggcaattgcttctcaataagagattattgcatgcatatttgtctgctttgttccagaaagatccgcaagctggccaagattttcatgaaatgcaagttgagctactggcagaatttgacaagccaaagctgttgcaatttctgaagagcagcaactactatgcattagagaaagctttcaaagtttgtgaagacagagattacatcccagaaatggtgtttcttttgggacgaatggggaacagcaagaaagctcttacaatgataatagaaagagaacaagacatcaggaaggcaattgagttcacaaaggaacaaaaggatgatgtgttatggcaggatctgatcaatcattccattgacaaacctttatttgttaaggaactactcatgaacattggcacttctgttgatccaataatgttgattggaaggataaaaccaggcatgaaaataccagggttgagagatgcccttgtcaagatcctacaggactataatttgcaagtttctttgcatgaggggtgcaagcaaattctagataaagacagtgttgcattgatgcagagacagctgcgagcacagggacgagggtacagtgttcaagatgatgcaaagtgtgaaggatgtcaagggtacatcattgtggaaaatagccagcagacggccaatgtgcttgtattcttctgtgaacatttctatcatgaacgatgcttacaacagactggagaagagcctttttgtccaatttgttcagcaagtgtaagaaaacgaaaatctaccaagcaggtcaggtgattttgcttgtctttttgatagctcattattatatgatttgtgctgttatatcattgttgtgataggaattgtgtggcaaataaggtgcaaagtttatttgtggctataaacccacgcnggtacagtgttcaagatgatgcaaagtgtgaaggatgtcaagggtacatcattgtggaaaatagccagcagacggccaatgtgcttgtattcttctgtgaacatttctatcatgaacgatgcttacaacagactggagaagagcctttttgtccaatttgttcagcaagtgtaagaaaacgaaaatctaccaagcaggtcaggtgattttgcttgtctttttgatagctcattattatatgatttgtgctgttatatcattgttgtgataggaattgtgtggcaaataaggtgcaaagtttatttgtggctataaacccacgcagaaataagcagtacgttttcctaccactgtgcccaatgctatttgagatccttgctatgaaaagccccatttttggaaaattgccagaaggacacttacacatacaatattctcaagtagatgcccccctaaaaacagcccattttgacaaagaaatggccctaaatatctctagatgatttattgcagcatcaacgtggaataaccaaaatttgatcttaggatttatcagaaggagatgttgcccctatcaaactctctttttgtgacaattacacccttccctggaattattattgttttgtttttaaatgtcacacatttctcatctcaactttcaccaaatgataatagatttcagactgggcaaagttttgttaagggttggcaaaggtaattacttgtaatgaaattttgaaagattgattcaccaaaagttgtgcaaaacagctgataaaatctcttaaagggagtacaaagaccagcagcctttgccatcttttgtttttgtaaattgcgtacagtcagttattctggaagctgtgcagagcaagtcgctgacttcatgcaaagcatgctggtctttgtactccctttaaatgccaatatttggatgattagatattctgctgacttaatgccttaaatatgaagtgccgaatgtttgaattaaattgaaatgaattagatagttatccagaaaatcggatcattttagcttatattcgagttttcctagcctgtggacaggcatagaattttcctcgctgaacgactgaatttgcttgctaaacagatgactttcaaaacggcaagacccgaatgcttgagttgcagataaaattaacttgtgattgaattcggctaaaaaaccaattaattcggactatcccttccttcttacatacaaagttgtaaaagaaccttgatatgattttcatccatctttattcaaaagtgaaaacattcaagtattcatttaatatttgtagctgcgaagtaatacaagccccctccccccccaagctattcgaaaatctttatatttgactgttcaaacattcggtgttgccctgaagtaaagggataatcgctaatcattgactatgcgcttattgatgaaatatacagtatcatcgctacgattactgctctatcaaccacccaggcatacttcttctttgaaaccagccttattattatgatatcagtttatcaagccattttcccttcaattcaattcaattcaattcaattttctttgtagaatacaaaacctaatacattatacgctattca

Transcript

scaffold660.g3.t1

TAGCCAGCTTGCAAGCAACCTCGTCCCCGGGGCCTTTTGTCATACCTACTAAACATCGCTCGTGACAAGCGAGCTATCATGTGACCTGTCGCCAGAGATGTGTGGAAAATGAAAATCAGAATATGTTAATGCGCCTGCGCATTGCATCATTGCAATCCAAGATGGAGGCTCACGAAATGGCTTTGCAGGGGGACGAGAAAAAGAATGCATTTCAAGACGATGATTTTGAGGACGATGAAGAAGACGAAGAGCCCAAACTGAAATATGAAAGAATTGGCAATGCAGTGCAAGAAATATTACAACAAGATGCAGCGAGTTGCATGGCTGTTCACCACAAATTTTTGGCCTTAGGAACACACTGGGGTGTTGTCCATGTCTTAGACCATCAAGGAAACAATATCAGGAATAAAGAATTCCCATCTCATACAACAACAGTGAACCAAATTAGCATCGACAATCATGGAGAATATGTTGGAAGTTGTTCAGAAGATGGCAGAGTGGTTATTAATGGCCTTTATAGCTCAGAGAATAACATACAGCAAATGTTCGACTGCCCCATTAGAGCACTTGCATTGCATCCTGATTATGGCAAGAAAGGAAACAGGCAGTATGTTATTGGGGTGGGAGAGAAGATGCTGCTATATGAGAAAAGCTGGCTCAGAAATAAGAATACTGTTCTCTACTCTGGAACAGGGTATATAAGGACAATGAAATGGAAGGGTAACTTTCTTGCATGGGGGGATTCACAAGGGGTTGAGGTTTATGATGTAAACAGAAGAGTACGCATTGCACATATTGAGAAAAAGTCTAAAAATCCAAGAGATGATTTATATAGGTGTAATCTCTGCTGGAAAGATGATCGCACACTCCTAATTGCATGGGCGGAATATATCCAAATTGGGGTTGTCAAGGAACGCGAATCAAAAGATAAACAAATGGCATGGCAAACAGGAGGAGAATTACCCCCCTTGTGTGTTGAGCTCACAAATGTTTTTCACACAGATTTCTATGCATGTGGAATTGCTCCATTTGGAAGTGAGCTGGTCGTGTTGTCGTATTTTGCCAATCAAGGAGAACATGGTATTCCAGATAGAGGACAAGCATCAAGACCACAGCTTTTGATACTCAGCCCACAAGGGCTTGAAACATACATTGAATCATCAACAGATGCTCTTTCAATCCGAGGCTTTGAAGAATATCATTCAAATAATTACTTCCTGGAGAATGTACAAGAGGAAAGTCTGTTCTACATTGTGAGTCCAAAGGATATTGTGTTGGCCAGACCAAGAGATATGGATGATCATATAACATGGCTGATGGAAAGAGATATGTTCGAAGAAGCGTTAGCTGATGCAGTGAAACATGAACATCTTCTCAAGACGCATAACGTGCTGAGAATTTGGAAGCAATACATGAATAATCTTATTGAAGCAAAGAAATACAAAGAAGCTGCGTCTTTGTGCAAGAAGATTATTGGAGATAACAAAGATCTTTGGGAGGAAGAAGTCTACAGGTTTGCAAAACACAGGCAATTAAAGGCAATCACTCCATTGATTCCATACAAGAAGCCAAGATTAAGTCATACAATTTATGAGATGATTTTGAACGAGTACTTGCAAACAGATGTGGTTGGCTTTCAGAATCTAATCAAAGAATGGCCATCAGATGTGTACAGAAGTGAGACAATAATCTACGTCCTGTCGTCAAAGTCGAAAGAAGAGCCAAATAACAAGATCCTGCTGCAGACACTAGGCACACTTTATGCACAGGAGAAGAAGTATGGCAAAGGCCTTGCAATCTATTTGAAGCTTGGAGATGCCGGTGTCTTTGACATGATCGATGAGCACAATCTGGTCGAGTTTGTGAAAGATAAGATTTTGAATTTGATGGAGATTGATGACAACAAAGCGGTCAAGCTCTTGATAGACAATATTGAGACAATCAATGTTGAGCATGTTGTTAGGCAATTGCTTCTCAATAAGAGATTATTGCATGCATATTTGTCTGCTTTGTTCCAGAAAGATCCGCAAGCTGGCCAAGATTTTCATGAAATGCAAGTTGAGCTACTGGCAGAATTTGACAAGCCAAAGCTGTTGCAATTTCTGAAGAGCAGCAACTACTATGCATTAGAGAAAGCTTTCAAAGTTTGTGAAGACAGAGATTACATCCCAGAAATGGTGTTTCTTTTGGGACGAATGGGGAACAGCAAGAAAGCTCTTACAATGATAATAGAAAGAGAACAAGACATCAGGAAGGCAATTGAGTTCACAAAGGAACAAAAGGATGATGTGTTATGGCAGGATCTGATCAATCATTCCATTGACAAACCTTTATTTGTTAAGGAACTACTCATGAACATTGGCACTTCTGTTGATCCAATAATGTTGATTGGAAGGATAAAACCAGGCATGAAAATACCAGGGTTGAGAGATGCCCTTGTCAAGATCCTACAGGACTATAATTTGCAAGTTTCTTTGCATGAGGGGTGCAAGCAAATTCTAGATAAAGACAGTGTTGCATTGATGCAGAGACAGCTGCGAGCACAGGGACGAGGGTACAGTGTTCAAGATGATGCAAAGTGTGAAGGATGTCAAGGGTACATCATTGTGGAAAATAGCCAGCAGACGGCCAATGTGCTTGTATTCTTCTGTGAACATTTCTATCATGAACGATGCTTACAACAGACTGGAGAAGAGCCTTTTTGTCCAATTTGTTCAGCAAGTGTAAGAAAACGAAAATCTACCAAGCAGGTCAGGTGATTTTGCTTGTCTTTTTGATAGCTCATTATTATATGATTTGTGCTGTTATATCATTGTTGTGATAGGAATTGTGTGGCAAATAAGGTGCAAAGTTTATTTGTGGCTATAAACCCACGCNGGTACAGTGTTCAAGATGATGCAAAGTGTGAAGGATGTCAAGGGTACATCATTGTGGAAAATAGCCAGCAGACGGCCAATGTGCTTGTATTCTTCTGTGAACATTTCTATCATGAACGATGCTTACAACAGACTGGAGAAGAGCCTTTTTGTCCAATTTGTTCAGCAAGTGTAAGAAAACGAAAATCTACCAAGCAGGTCAGGTGATTTTGCTTGTCTTTTTGATAGCTCATTATTATATGATTTGTGCTGTTATATCATTGTTGTGATAGGAATTGTGTGGCAAATAAGGTGCAAAGTTTATTTGTGGCTATAAACCCACGCAGAAATAAGCAGTACGTTTTCCTACCACTGTGCCCAATGCTATTTGAGATCCTTGCTATGAAAAGCCCCATTTTTGGAAAATTGCCAGAAGGACACTTACACATACAATATTCTCAAGTAGATGCCCCCCTAAAAACAGCCCATTTTGACAAAGAAATGGCCCTAAATATCTCTAGATGATTTATTGCAGCATCAACGTGGAATAACCAAAATTTGATCTTAGGATTTATCAGAAGGAGATGTTGCCCCTATCAAACTCTCTTTTTGTGACAATTACACCCTTCCCTGGAATTATTATTGTTTTGTTTTTAAATGTCACACATTTCTCATCTCAACTTTCACCAAATGATAATAGATTTCAGACTGGGCAAAGTTTTGTTAAGGGTTGGCAAAGGTAATTACTTGTAATGAAATTTTGAAAGATTGATTCACCAAAAGTTGTGCAAAACAGCTGATAAAATCTCttaaagggagtacaaagaccagcagcctttgccatcttttgtttttgtaaattgcgtacagtcagttattctggaagctgtgcagagcaagtcgctgacttcatgcaaagcatgctggtctttgtactccctttaaATGCCAATATTTGGATGATTAGATATTCTGCTGACTTAATGCCTTAAATATGAAGTGCCGAATGTTTGAATTAAATTGAAATGAATTAGATAGTTATCCAGAAAATCGGATCATTTTAGCTTATATTCGAGTTTTCCTAGCCTGTGGACAGGCATAGAATTttcctcgctgaacgactgaatttgcttgctaaacagatgactttcaaaacggcaagacccgaatgcttgagttgcagataaaattaacttgtgattgaattcggctaaaaaACCAATTAATTCGGACTATCCCTTCCTTCTTACATACAAAGTTGTAAAAGAACCTTGATATGATTTTCATCCATCTTTATTCAAAAGTGAAAACATTCAAGTATTCATTTAATATTTGTAGCTGCGAAGTAATACAAGCCCCCTCCCCCCCCAAGCTATTCGAAAATCTTTATATTTGACTGTTCAAACATTCGGTGTTGCCCTGAAGTAAAGGGATAATCGCTAATCATTGACTATGCGCTTATTGATGAAATATACAGTATCATCGCTACGATTACTGCTCTATCAACCACCCAGGCATACTTCTTCTTTGAAACCAGCCTTATTATTATGATATCAGTTTATCAAGCCATTTTCCCttcaattcaattcaattcaattcaattttctttgtagaatacaaaacctaatacattatacgctattca

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00637 all species →	Clathrin	Region in Clathrin and VPS	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR000547 all species →	Repeat	Clathrin, heavy chain/VPS, 7-fold repeat	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR016902 all species →	Family	Vacuolar protein sorting-associated protein 41	Interproscan
IPR045111 all species →	Family	Vacuolar protein sorting-associated protein Vps41/Vps8	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12616 all species →	VACUOLAR PROTEIN SORTING VPS41	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan
GO:0016192 all species →	Biological Process	vesicle-mediated transport	Interproscan
GO:0034058 all species →	Biological Process	endosomal vesicle fusion	Interproscan
GO:0046907 all species →	Biological Process	intracellular transport	Interproscan
GO:0005770 all species →	Cellular Component	late endosome	Interproscan
GO:0006623 all species →	Biological Process	protein targeting to vacuole	Interproscan
GO:0009267 all species →	Biological Process	cellular response to starvation	Interproscan
GO:0016236 all species →	Biological Process	macroautophagy	Interproscan
GO:0030897 all species →	Cellular Component	HOPS complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20184	VPS41; vacuolar protein sorting-associated protein 41	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.