Gene detail

Detailed information of scaffold672.g5.t3 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold672:78581...100724
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold672.g5.t3

caactacagctatcctacttttttacgttgcagataaattgacagtgccataaaaaacttcactaaaaactgatgatttatttattatttgaaggaatgtctaaatcaagaggagaggttttgtatcaaaaagtcaatgggcatttgaaagtggaagaggcagattattttgggttgcaatattatgattcagagggaaatatgtgttggttggattcgcaaaagcaaataaacaaacaagtgaaagaagcgtcgaaagtaaccttcaagtttcgagtgatgttttacacccctgatccaaattccttacaagagtatacaagatacctatttactttacaagttcgcagagatttactagatggaaggttacactgcagcgaagacactggatcattactcgcctcctacattgttcaaggagagcttggtgactacgatacaactactcatcaagatgggtatctttctggttttcagtttgtgccaaatcagagttcagacattgaggagaaaattattcaatatcatatgtctcacagggggaaaagtccggctgaagcggatcgaagtatgctagaagttgctaggcaactagaaatgtatggaatcacattgtatccagctaaggatcgagatgatgcagatctcagtctgtctgtatttcacatgggaattttggtatttcaaaatcaatcaaagatcaatatgttttcttgggccaaaatcagaaagctgtcttttaaaaagaagaaatttataatcaaattacatccaaaagtttatacagcagatcttgtggaatttatcatgcagagtcgtgatgcttgcaaaggattctggaagatctgtatcgcgcatcatatatttttcagacaaaaacagtcagtttcgacacgacggaaatcatcagtgctctcaagggggtcaaaattcagatacagtggacgaactcaaaaacagttgatggaggattctcgtggttcatttagaccaacagctgaacttgaaagaactcgatcagccagattacaacgtggaaatgaaacgcaatcccccgtcgcaagtgttaacagtaatgatatgtgtgcaataccgatcacaccacccccgtcttattcttctttcaaatttgaatcaccttatcgaacaaaggagagcacaccaagtttcaaaaattcgacggatgcatctgaagatgaaggcagctttatcattggatctcgcaaaacatcgcaacagattggaagcacttcggaaacagaaagtttgcaagaaagttctagctttattgaacaaacagtagttaagttacaacgacaagatacaaatgaagaaaaagcaaatggcgacaaagaattgctaaatggtgacgacatagctgagttatcccatcatgcagagggtgatgaattgtcacgtgatgtaagagaaagaacagaaagtgatctggaaatagaaagacaagttcattctcttttggatcaaattaaacaagaaccaagttggcaatatcaccttactactactgatcttgacgaaaaagacaatcccttgattggagattcccacttgggtgacgttgcagcagtggacgtgaatggtgaagtcgatcacgccgatattggtcacatgaccactgaagaatgcgtcgaaccaaatggagatgtaaatgcaaacgaggttgaagatgtaattgcaacagatgaacaagttttagcgaataaaatgacaggcctcagctcaaatcaccaaggcaacgtaactgggatcgaggcacactgaatcgaggcactgttgatgttgacaagatggagacagaatatgagctgttgttgttgttgctattggtctttaaattatgcagatgttatcatttttggagcacgtgacattggagcacatgacattatcaacaaaaatccaattcgttagggaaagaaaacagtttaatattgtaaatgaaatgtagccattttaataatcaataattttagtagttatcagttttttaatcgacctttatcttctttcatatattttgtctaatttactatgagtaaaacttttttttaaattatgatttactctcatgaaatacttcattgtaactttattgtttggaatatgggatctgggattccttttccccctttgataatcatattaagaataatgttaaaggttgatttttgtagctaaggacagatttcatttctttattggaacaattcttgaaaagagactattagtctttaagcattctgttttttgtgtttatgtatatgcattcatttatttttgtaaactctactatttctaatcaccttttagtattgattttttgctttggaccaaattttgcctttctctaatgtgcttaaaaatatttgaatcaactacctttcaggttaccataaatttatgcaatatga

Transcript

scaffold672.g5.t3

CAACTACAGCTATCCTACTTTTTTACGTTGCAGATAAATTGACAGTGCCATAAAAAACTTCACTAAAAACTGATGATTTATTTATTATTTGAAGGAATGTCTAAATCAAGAGGAGAGGTTTTGTATCAAAAAGTCAATGGGCATTTGAAAGTGGAAGAGGCAGATTATTTTGGGTTGCAATATTATGATTCAGAGGGAAATATGTGTTGGTTGGATTCGCAAAAGCAAATAAACAAACAAGTGAAAGAAGCGTCGAAAGTAACCTTCAAGTTTCGAGTGATGTTTTACACCCCTGATCCAAATTCCTTACAAGAGTATACAAGATACCTATTTACTTTACAAGTTCGCAGAGATTTACTAGATGGAAGGTTACACTGCAGCGAAGACACTGGATCATTACTCGCCTCCTACATTGTTCAAGGAGAGCTTGGTGACTACGATACAACTACTCATCAAGATGGGTATCTTTCTGGTTTTCAGTTTGTGCCAAATCAGAGTTCAGACATTGAGGAGAAAATTATTCAATATCATATGTCTCACAGGGGGAAAAGTCCGGCTGAAGCGGATCGAAGTATGCTAGAAGTTGCTAGGCAACTAGAAATGTATGGAATCACATTGTATCCAGCTAAGGATCGAGATGATGCAGATCTCAGTCTGTCTGTATTTCACATGGGAATTTTGGTATTTCAAAATCAATCAAAGATCAATATGTTTTCTTGGGCCAAAATCAGAAAGCTGTCTTTTAAAAAGAAGAAATTTATAATCAAATTACATCCAAAAGTTTATACAGCAGATCTTGTGGAATTTATCATGCAGAGTCGTGATGCTTGCAAAGGATTCTGGAAGATCTGTATCGCGCATCATATATTTTTCAGACAAAAACAGTCAGTTTCGACACGACGGAAATCATCAGTGCTCTCAAGGGGGTCAAAATTCAGATACAGTGGACGAACTCAAAAACAGTTGATGGAGGATTCTCGTGGTTCATTTAGACCAACAGCTGAACTTGAAAGAACTCGATCAGCCAGATTACAACGTGGAAATGAAACGCAATCCCCCGTCGCAAGTGTTAACAGTAATGATATGTGTGCAATACCGATCACACCACCCCCGTCTTATTCTTCTTTCAAATTTGAATCACCTTATCGAACAAAGGAGAGCACACCAAGTTTCAAAAATTCGACGGATGCATCTGAAGATGAAGGCAGCTTTATCATTGGATCTCGCAAAACATCGCAACAGATTGGAAGCACTTCGGAAACAGAAAGTTTGCAAGAAAGTTCTAGCTTTATTGAACAAACAGTAGTTAAGTTACAACGACAAGATACAAATGAAGAAAAAGCAAATGGCGACAAAGAATTGCTAAATGGTGACGACATAGCTGAGTTATCCCATCATGCAGAGGGTGATGAATTGTCACGTGATGTAAGAGAAAGAACAGAAAGTGATCTGGAAATAGAAAGACAAGTTCATTCTCTTTTGGATCAAATTAAACAAGAACCAAGTTGGCAATATCACCTTACTACTACTGATCTTGACGAAAAAGACAATCCCTTGATTGGAGATTCCCACTTGGGTGACGTTGCAGCAGTGGACGTGAATGGTGAAGTCGATCACGCCGATATTGGTCACATGACCACTGAAGAATGCGTCGAACCAAATGGAGATGTAAATGCAAACGAGGTTGAAGATGTAATTGCAACAGATGAACAAGTTTTAGCGAATAAAATGACAGGCCTCAGCTCAAATCACCAAGGCAACGTAACTGGGATCGAGGCACACTGAATCGAGGCACTGTTGATGTTGACAAGATGGAGACAGAATATGAGCTGTTGTTGTTGTTGCTATTGGTCTTTAAATTATGCAGATGTTATCATTTTTGGAGCACGTGACATTGGAGCACATGACATTATCAACAAAAATCCAATTCGTTAGGGAAAGAAAACAGTTTAATATTGTAAATGAAATGTAGCCATTTTAATAATCAATAATTTTAGTAGTTATCAGTTTTTTAATCGACCTTTATCTTCTTTCATATATTTTGTCTAATTTACTATGAGTAAAACTTTTTTTTAAATTATGATTTACTCTCATGAAATACTTCATTGTAACTTTATTGTTTGGAATATGGGATCTGGGATTCCTTTTCCCCCTTTGATAATCATATTAAGAATAATGTTAAAGGTTGATTTTTGTAGCTAAGGACAGATTTCATTTCTTTATTGGAACAATTCTTGAAAAGAGACTATTAGTCTTTAAGCATTCTGTTTTTTGTGTTTATGTATATGCATTCATTTATTTTTGTAAACTCTACTATTTCTAATCACCTTTTAGTATTGATTTTTTGCTTTGGACCAAATTTTGCCTTTCTCTAATGTGCTTAAAAATATTTGAATCAACTACCTTTCAGGTTACCATAAATTTATGCAATATGA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08736 all species →	FA	FERM adjacent (FA)	Family	Interproscan
PF09380 all species →	FERM_C	FERM C-terminal PH-like domain	Domain	Interproscan
PF09379 all species →	FERM_N	FERM N-terminal domain	Domain	Interproscan
PF00373 all species →	FERM_M	FERM central domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000798 all species →	Family	Ezrin/radixin/moesin-like	Interproscan
IPR014847 all species →	Domain	FERM adjacent	Interproscan
IPR019747 all species →	Conserved_site	FERM conserved site	Interproscan
IPR014352 all species →	Homologous_superfamily	FERM/acyl-CoA-binding protein superfamily	Interproscan
IPR051835 all species →	Family	RAC1-specific guanine nucleotide exchange factor	Interproscan
IPR018980 all species →	Domain	FERM, C-terminal PH-like domain	Interproscan
IPR035963 all species →	Homologous_superfamily	FERM superfamily, second domain	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR019748 all species →	Domain	FERM central domain	Interproscan
IPR019749 all species →	Domain	Band 4.1 domain	Interproscan
IPR029071 all species →	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR018979 all species →	Domain	FERM, N-terminal	Interproscan
IPR000299 all species →	Domain	FERM domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45858 all species →	FERM DOMAIN CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008092 all species →	Molecular Function	cytoskeletal protein binding	Interproscan
GO:0005085 all species →	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0005856 all species →	Cellular Component	cytoskeleton	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for scaffold672.g5.t3.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.