Genomic Location: scaffold69:486760...512546
NR annotation: XP_002163195.1, 3'-5' ssDNA/RNA exonuclease TatD [Hydra vulgaris]
| CDS | |||||
| scaffold69.g12.t1 | |||||
| Transcript |
| scaffold69.g12.t1 |
| Protein |
| scaffold69.g12.t1 |
| Uniprot term | Description |
|---|---|
| D0Z9R0 | 3'-5' ssDNA/RNA exonuclease TatD OS=Edwardsiella piscicida OX=1263550 GN=tatD PE=3 SV=1 |
| B7LTZ5 | 3'-5' ssDNA/RNA exonuclease TatD OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CCUG 18766 / IAM 14443 / JCM 21226 / LMG 7866 / NBRC 102419 / NCTC 12128 / CDC 0568-73) OX=585054 GN=tatD PE=3 SV=1 |
| Q9L6M2 | 3'-5' ssDNA/RNA exonuclease TatD OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) OX=99287 GN=tatD PE=3 SV=1 |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01026 | TatD_DNase | TatD related DNase | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000504 | Domain | RNA recognition motif domain | Interproscan |
| IPR001130 | Family | 3'-5' ssDNA/RNA exonuclease TatD-like | Interproscan |
| IPR035979 | Homologous_superfamily | RNA-binding domain superfamily | Interproscan |
| IPR012677 | Homologous_superfamily | Nucleotide-binding alpha-beta plait domain superfamily | Interproscan |
| IPR050891 | Family | TatD-type Metallo-dependent Hydrolase | Interproscan |
| IPR032466 | Homologous_superfamily | Metal-dependent hydrolase | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10060 | TATD FAMILY DEOXYRIBONUCLEASE | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0003723 | Molecular Function | RNA binding | Interproscan |
| GO:0016788 | Molecular Function | hydrolase activity, acting on ester bonds | Interproscan |
| GO:0003676 | Molecular Function | nucleic acid binding | Interproscan |
| GO:0005829 | Cellular Component | cytosol | Interproscan |
| GO:0008310 | Molecular Function | single-stranded DNA 3'-5' DNA exonuclease activity | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| K03424 | tatD; TatD DNase family protein | EC:3.1.21.- | Enzymes with EC numbers | - | deepkoala |
Maintained by Dr. Jiajie She from Prof. Longjun Wu's Lab & Prof. Pei-yuan Qian's Lab
Hong Kong Branch of the Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou)
Hong Kong University of Science and Technology
Clear Water Bay, Kowloon, Hong Kong
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