Gene detail

Detailed information of scaffold69.g35.t4 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold69:377926...400674
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold69.g35.t4

acctttcaagctattgcttaatcggancctgcccctccagaaattgtttgcatcagggatgattcttggaatgctcccttttcttcttcggattcactttccaaaagaaagtcaaacgaagggattcagactcgcgaagactcgaactttgcaggaaataatgataaagtcgagaagtattcggttggccaggacatcaacataaaaagtggtactgaagatagggactcctgtaatgagtcagtagtaaagaaaagtgcgagacgaatatggatttactgtattcttcatagtttggctatttaattgaatttatgactgcttccattcccacaactgatgaagctcgaaatcagcagcaacaacagcaatgcaactcaatgaatgaaatatggaaggcttttggagtaaaactggaatggccgagaggcggacaagacaagaaaagaatgagaaaagacaaactcaacttatgaaaagcatctgcaaaattaagcagatgaggtgatgtattatgcattcgttgaaatatttacagcttgcgctcaatttactaatctgttagaatgtaaacccggtatggaagtgagcaaaaggccgcttgtattttacatactagaccaaattcgtatcggctttacttaggcccgcggagtcctccagacagacaacaacaagacgggcacgagaccattcgaagccagccatggagtgtagagtagtcacgagaaaatatgtgtccaacgctgttcaggaaggatttcatcagtttttggtggtgaaggaaggaggcgaagattggaaatttccaacaagctgtctgagtgttggggaatctccgctcgaagcgtgtaaaagagtttttgtggagaactcatgtgcaaatgatgtagatcttatgggagttcttggtatcgtaacaaaatgggaagataaagcaccattaatttcaactacattggctgtcgagatgaagaaccctatcaaagctgaactcctcagatcatctatggaaaaagtcaagaataatcttgacaaagctgatgcaaaatggtgcacattgaaagaacttattgagctgcagaaatgtgagaatttcagtcaatctgatttggagtatgccagaaagtttttccaaggaaatatttctccaatctcaattttcaatgatgggtcaactcacaagagcatgaatttagaagaaaagaaatttgttgacaattgcacagatcacaattcagtcagtccaatggacattgatgcagatacgatctcaaaagctcataagcgtaagcggaaaccatccgacagagacagtgatcaatcaatcaaaggttccaatgaaaacatttcacaaccggaaatgtcagtattaaacggaagtcacatttattatgatatcaagaagatgttgttatccaaacttacaccaccatatagagagttggttgatgcttctaagtttgaagttaatgatcttgttgcaattcatttcattttcgagaaagtagtcaacgagaataaacaactggatgctgctaatttcaagacaattatcaatgatctaaatctcaagggatataaccttgaacatcttttcagaacattcgataaaaacgacaaaggattcttaagatttgaagaggtagtttccggcctcgcagctatggagccagctacaccacacggaggctgtcctggggagatcagaagtgtttatatcttgcgatattatgactcaagtggacaaggtgtcttaacgtttgacgatttctgaacattcgataaaaacgacaaaggattcttaagatttgaagaggtagtttccggcctcgcagctatggagccagctacaccacacggaggctgtcctggggagatcagaagtgtttatatcttgcgatattatgactcaagtggacaaggtgtcttaacgtttgacgatttctgcacgatccttgaagatataagaaaagcgaagggagtgcagatggacaaggaaaaagcaatactggaagccactgagcagtttgaatcattgaatacagaagaagctgacaaaattacaacactcgaattcctccaagccattgggcagctaaagtttcgtggaacgtcagtacttttgagaaatcaaccatcagtaaagaaaattcttagaaagcaacctttcgagcaacacaaagaaatgttacggaagagcgttgatgacagtcgtgaaagatcaagaccaacatcatctaacgaagctttccatgacttcggatacgaattggcaacgcattcagtcaaagtgcggcgcagtggaacaatgattgatgtttcaacattgtcagatttgtttgggaagtcatcactacctggagtaggaactttatttagcgaagaattaagagccagatttctgaggttaacatcagtggattcttttaatatgaacacaccagccaatgagatgctgactggcctacggtattttgagcgaccaatcaaaacgaatcctgctggagtgaaccccaaaagtgctctgtcatggggtgttgttgatatggaagccttggcgaagtgtatactcgtcatttgtcaacaagttctggatattttttctgatgaaccacgtcttatgcggttagattcaccaacttatattctaggggatgtacatggcaacttctcagaccttgtatgctttgagaaagttctttggcgaatgggaccgattctcactccttgtagtttcctgttcttgggcgattatgtggatcgaggcagctgtggaatagaggtggtggcatatttattcgctcataaaatactggctccttcaaaattcattttaattcgtggcaaccatgaaattaggaatgtccaaagagtgcatacattttatggggaatgcatggcaaagtttggtaacttctttggacctaaagtctgggaagcagtgaataaatgcttcgattgtctacctatcgctgctgtcatcgacaaaaagagtttaaggcccaataaatgcttcgactgtctacctatcgctgctgtcatcgacaaaaagatattttgtgttcatggtggaataccatctcatgagaacagcgatggatttttatcagaactcgaatcaatcccaaagcacctcagtgatcctgaaaaacaaagtcctcttgcgtgggatttgatgtggagtgatccgctcaggtaatctatctgttgattttagatctcaggtcagcttacgttggttgtcactttataaatccacttttcataa

Transcript

scaffold69.g35.t4

ACCTTTCAAGCTATTGCTTAATCGGANCCTGCCCCTCCAGAAATTGTTTGCATCAGGGATGATTCTTGGAATGCTCCCTTTTCTTCTTCGGATTCACTTTCCAAAAGAAAGTCAAACGAAGGGATTCAGACTCGCGAAGACTCGAACTTTGCAGGAAATAATGATAAAGTCGAGAAGTATTCGGTTGGCCAGGACATCAACATAAAAAGTGGTACTGAAGATAGGGACTCCTGTAATGAGTCAGTAGTAAAGAAAAGTGCGAGACGAATATGGATTTACTGTATTCTTCATAGTTTGGCTATTTAATTGAATTTATGACTGCTTCCATTCCCACAACTGATGAAGCTCGAAATCAGCAGCAACAACAGCAATGCAACTCAATGAATGAAATATGGAAGGCTTTTGGAGTAAAACTGGAATGGCCGAGAGGCGgacaagacaagaaaagaatgagaaaagacaaACTCAACTTATGAAAAGCATCTGCAAAATTAAGCAGATGAGGTGATGTATTATGCATTCGTTGAAATATTTACAGCTTGCGCTCAATTTACTAATCTGTTAGAATGTAAACCCGGTATGGAAGTGAGCAAAAGGCCGCTTGTATTTTACATACTAGACCAAATTCGTATCGGCTTTACTTAGGCCCGCGGAGTCCTCCAGACAGACAACAACAAGACGGGCACGAGACCATTCGAAGCCAGCCATGGAGTGTAGAGTAGTCACGAGAAAATATGTGTCCAACGCTGTTCAGGAAGGATTTCATCAGTTTTTGGTGGTGAAGGAAGGAGGCGAAGATTGGAAATTTCCAACAAGCTGTCTGAGTGTTGGGGAATCTCCGCTCGAAGCGTGTAAAAGAGTTTTTGTGGAGAACTCATGTGCAAATGATGTAGATCTTATGGGAGTTCTTGGTATCGTAACAAAATGGGAAGATAAAGCACCATTAATTTCAACTACATTGGCTGTCGAGATGAAGAACCCTATCAAAGCTGAACTCCTCAGATCATCTATGGAAAAAGTCAAGAATAATCTTGACAAAGCTGATGCAAAATGGTGCACATTGAAAGAACTTATTGAGCTGCAGAAATGTGAGAATTTCAGTCAATCTGATTTGGAGTATGCCAGAAAGTTTTTCCAAGGAAATATTTCTCCAATCTCAATTTTCAATGATGGGTCAACTCACAAGAGCATGAATTTAGAAGAAAAGAAATTTGTTGACAATTGCACAGATCACAATTCAGTCAGTCCAATGGACATTGATGCAGATACGATCTCAAAAGCTCATAAGCGTAAGCGGAAACCATCCGACAGAGACAGTGATCAATCAATCAAAGGTTCCAATGAAAACATTTCACAACCGGAAATGTCAGTATTAAACGGAAGTCACATTTATTATGATATCAAGAAGATGTTGTTATCCAAACTTACACCACCATATAGAGAGTTGGTTGATGCTTCTAAGTTTGAAGTTAATGATCTTGTTGCAATTCATTTCATTTTCGAGAAAGTAGTCAACGAGAATAAACAACTGGATGCTGCTAATTTCAAGACAATTATCAATGATCTAAATCTCAAGGGATATAACCTTGAACATCTTTTCAGAACATTCGATAAAAACGACAAAGGATTCTTAAGATTTGAAGAGGTAGTTTCCGGCCTCGCAGCTATGGAGCCAGCTACACCACACGGAGGCTGTCCTGGGGAGATCAGAAGTGTTTATATCTTGCGATATTATGACTCAAGTGGACAAGGTGTCTTAACGTTTGACGATTTCTGAACATTCGATAAAAACGACAAAGGATTCTTAAGATTTGAAGAGGTAGTTTCCGGCCTCGCAGCTATGGAGCCAGCTACACCACACGGAGGCTGTCCTGGGGAGATCAGAAGTGTTTATATCTTGCGATATTATGACTCAAGTGGACAAGGTGTCTTAACGTTTGACGATTTCTGCACGATCCTTGAAGATATAAGAAAAGCGAAGGGAGTGCAGATGGACAAGGAAAAAGCAATACTGGAAGCCACTGAGCAGTTTGAATCATTGAATACAGAAGAAGCTGACAAAATTACAACACTCGAATTCCTCCAAGCCATTGGGCAGCTAAAGTTTCGTGGAACGTCAGTACTTTTGAGAAATCAACCATCAGTAAAGAAAATTCTTAGAAAGCAACCTTTCGAGCAACACAAAGAAATGTTACGGAAGAGCGTTGATGACAGTCGTGAAAGATCAAGACCAACATCATCTAACGAAGCTTTCCATGACTTCGGATACGAATTGGCAACGCATTCAGTCAAAGTGCGGCGCAGTGGAACAATGATTGATGTTTCAACATTGTCAGATTTGTTTGGGAAGTCATCACTACCTGGAGTAGGAACTTTATTTAGCGAAGAATTAAGAGCCAGATTTCTGAGGTTAACATCAGTGGATTCTTTTAATATGAACACACCAGCCAATGAGATGCTGACTGGCCTACGGTATTTTGAGCGACCAATCAAAACGAATCCTGCTGGAGTGAACCCCAAAAGTGCTCTGTCATGGGGTGTTGTTGATATGGAAGCCTTGGCGAAGTGTATACTCGTCATTTGTCAACAAGTTCTGGATATTTTTTCTGATGAACCACGTCTTATGCGGTTAGATTCACCAACTTATATTCTAGGGGATGTACATGGCAACTTCTCAGACCTTGTATGCTTTGAGAAAGTTCTTTGGCGAATGGGACCGATTCTCACTCCTTGTAGTTTCCTGTTCTTGGGCGATTATGTGGATCGAGGCAGCTGTGGAATAGAGGTGGTGGCATATTTATTCGCTCATAAAATACTGGCTCCTTCAAAATTCATTTTAATTCGTGGCAACCATGAAATTAGGAATGTCCAAAGAGTGCATACATTTTATGGGGAATGCATGGCAAAGTTTGGTAACTTCTTTGGACCTAAAGTCTGGGAAGCAGTGAATAAATGCTTCGATTGTCTACCTATCGCTGCTGTCATCGACAAAAAGagtttaaggcccaaTAAATGCTTCGACTGTCTACCTATCGCTGCTGTCATCGACAAAAAGATATTTTGTGTTCATGGTGGAATACCATCTCATGAGAACAGCGATGGATTTTTATCAGAACTCGAATCAATCCCAAAGCACCTCAGTGATCCTGAAAAACAAAGTCCTCTTGCGTGGGATTTGATGTGGAGTGATCCGCTCAGGTAATCTATCTGTTGATTTTAGATCTCAGGTCAGCTTACGTTGGTTGTCACTTTATAAATCCACTTTTCATAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00149 all species →	Metallophos	Calcineurin-like phosphoesterase	Domain	Interproscan
PF13833 all species →	EF-hand_8	EF-hand domain pair	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029052 all species →	Homologous_superfamily	Metallo-dependent phosphatase-like	Interproscan
IPR050341 all species →	Family	Serine/threonine-protein phosphatase PP1 catalytic subunit	Interproscan
IPR011992 all species →	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR006186 all species →	Domain	Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase	Interproscan
IPR002048 all species →	Domain	EF-hand domain	Interproscan
IPR004843 all species →	Domain	Calcineurin-like phosphoesterase domain, ApaH type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11668 all species →	SERINE/THREONINE PROTEIN PHOSPHATASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004722 all species →	Molecular Function	protein serine/threonine phosphatase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0016787 all species →	Molecular Function	hydrolase activity	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for scaffold69.g35.t4.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.